Wall clock time and date at job start Tue Mar 31 2020 11:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46855 * 119.99990 * 9 7 5 12 12 H 1.48496 * 109.46967 * 239.99783 * 9 7 5 13 13 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 14 14 N 1.46900 * 109.46619 * 294.99903 * 13 2 1 15 15 C 1.46907 * 110.99641 * 179.97438 * 14 13 2 16 16 H 1.08996 * 110.27586 * 327.08908 * 15 14 13 17 17 C 1.54596 * 110.30598 * 89.28292 * 15 14 13 18 18 C 1.54943 * 102.92084 * 96.95928 * 17 15 14 19 19 N 1.48531 * 103.22721 * 37.41128 * 18 17 15 20 20 C 1.46899 * 111.00189 * 200.27731 * 19 18 17 21 21 C 1.50700 * 109.46850 * 307.40023 * 20 19 18 22 22 C 1.38235 * 119.99968 * 269.71861 * 21 20 19 23 23 C 1.38233 * 119.99932 * 179.76803 * 22 21 20 24 24 C 1.38232 * 120.00462 * 0.48883 * 23 22 21 25 25 C 1.38238 * 119.99738 * 359.78775 * 24 23 22 26 26 C 1.38240 * 120.00061 * 359.95813 * 25 24 23 27 27 C 1.47901 * 105.82087 * 320.79298 * 19 18 17 28 28 H 1.09000 * 109.91754 * 265.98130 * 27 19 18 29 29 C 1.53006 * 109.91709 * 144.68533 * 27 19 18 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 34 34 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 35 35 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47059 * 54.99596 * 13 2 1 37 37 H 1.08996 * 109.47073 * 174.99688 * 13 2 1 38 38 H 1.00900 * 111.00289 * 56.04740 * 14 13 2 39 39 H 1.09004 * 110.71864 * 215.31439 * 17 15 14 40 40 H 1.08994 * 110.72946 * 338.59685 * 17 15 14 41 41 H 1.08989 * 110.66473 * 278.97244 * 18 17 15 42 42 H 1.09000 * 110.80675 * 155.91120 * 18 17 15 43 43 H 1.09002 * 109.46837 * 67.39450 * 20 19 18 44 44 H 1.08997 * 109.47672 * 187.39607 * 20 19 18 45 45 H 1.08004 * 119.99772 * 0.02562 * 22 21 20 46 46 H 1.08010 * 119.99619 * 180.25271 * 23 22 21 47 47 H 1.07997 * 120.00443 * 179.77099 * 24 23 22 48 48 H 1.07992 * 120.00423 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00585 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46730 * 302.40767 * 29 27 19 51 51 H 1.08999 * 109.47026 * 62.41107 * 29 27 19 52 52 H 1.08997 * 109.47064 * 182.40955 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8512 9 14 1.4987 0.5628 -5.2497 10 1 0.7433 1.7750 -4.8433 11 1 2.7170 0.9665 -5.9966 12 1 0.6440 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6672 16 1 2.1211 -1.7090 3.5343 17 6 3.5441 -0.1339 4.0307 18 6 3.2688 0.9660 5.0867 19 7 2.1253 0.4167 5.8593 20 6 1.4146 1.4829 6.5777 21 6 2.3981 2.2789 7.3963 22 6 2.6721 1.9085 8.6997 23 6 3.5778 2.6358 9.4490 24 6 4.2020 3.7395 8.8985 25 6 3.9238 4.1133 7.5971 26 6 3.0220 3.3830 6.8459 27 6 1.2426 -0.2329 4.8662 28 1 0.4690 0.4645 4.5447 29 6 0.6028 -1.4820 5.4757 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.9227 -1.8423 -4.7318 36 1 1.6054 -1.7198 1.2951 37 1 3.1263 -0.7995 1.2055 38 1 0.6529 0.1793 2.4753 39 1 4.1350 -0.9425 4.4610 40 1 4.0421 0.2863 3.1570 41 1 2.9919 1.9027 4.6032 42 1 4.1357 1.1090 5.7318 43 1 0.9238 2.1400 5.8597 44 1 0.6669 1.0414 7.2364 45 1 2.1816 1.0484 9.1310 46 1 3.7949 2.3439 10.4660 47 1 4.9069 4.3099 9.4852 48 1 4.4111 4.9758 7.1670 49 1 2.8042 3.6752 5.8292 50 1 1.3845 -2.1627 5.8131 51 1 -0.0196 -1.1948 6.3232 52 1 -0.0121 -1.9784 4.7250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602665183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:22 Heat of formation + Delta-G solvation = -3.492638 kcal Electronic energy + Delta-G solvation = -26302.858251 eV Core-core repulsion = 22879.338836 eV Total energy + Delta-G solvation = -3423.519416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96384 -39.70070 -37.96508 -35.58734 -34.26071 -32.75841 -32.30210 -31.69867 -30.31060 -28.78063 -27.25143 -26.10780 -25.59914 -24.16828 -23.41680 -22.43159 -21.39136 -21.09370 -20.44924 -18.51518 -17.72167 -17.30251 -16.75537 -16.56413 -16.28860 -16.09628 -15.96694 -15.45903 -15.03526 -14.91044 -14.47999 -14.31843 -14.27663 -14.09273 -13.77588 -13.67345 -13.50596 -13.42042 -13.28612 -12.82590 -12.77510 -12.72863 -12.60277 -12.35248 -12.26461 -12.12740 -12.10220 -11.85231 -11.75154 -11.71707 -11.57744 -11.47958 -11.06804 -10.90111 -10.54553 -9.77094 -9.73141 -9.38791 -9.30704 -8.17977 -6.26967 0.44859 0.54736 1.39208 1.39809 1.52710 2.41369 2.75470 3.10551 3.15453 3.29710 3.55541 3.73760 3.95097 3.98485 4.16035 4.19451 4.20846 4.25120 4.29538 4.33360 4.39004 4.42576 4.49324 4.57153 4.62587 4.68716 4.73303 4.79831 4.83115 4.86278 4.88802 4.92736 5.02220 5.09208 5.10429 5.14694 5.17143 5.21126 5.24776 5.35798 5.38261 5.48059 5.55027 5.59515 5.66477 5.72507 5.79572 5.86808 5.89483 6.06102 6.13564 6.16630 6.31145 6.49476 6.89254 7.41270 8.94244 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.002235 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.357728 B =12526.894078 C =13154.498798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.081 3.919 14 N -0.680 5.680 15 C 0.078 3.922 16 H 0.051 0.949 17 C -0.115 4.115 18 C 0.055 3.945 19 N -0.505 5.505 20 C 0.087 3.913 21 C -0.090 4.090 22 C -0.110 4.110 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.131 4.131 26 C -0.125 4.125 27 C 0.066 3.934 28 H 0.060 0.940 29 C -0.130 4.130 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.041 0.959 33 H -0.015 1.015 34 H -0.010 1.010 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.054 0.946 38 H 0.344 0.656 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.092 0.908 45 H 0.131 0.869 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.133 0.867 49 H 0.117 0.883 50 H 0.059 0.941 51 H 0.066 0.934 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 7.116 28.557 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.048 4.048 14 N -0.314 5.314 15 C -0.032 4.032 16 H 0.069 0.931 17 C -0.153 4.153 18 C -0.073 4.073 19 N -0.229 5.229 20 C -0.040 4.040 21 C -0.090 4.090 22 C -0.128 4.128 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.043 4.043 28 H 0.078 0.922 29 C -0.188 4.188 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.004 0.996 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.164 0.836 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.149 0.851 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.151 0.849 49 H 0.135 0.865 50 H 0.078 0.922 51 H 0.085 0.915 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.837 7.057 28.801 29.665 hybrid contribution -0.731 -0.007 -1.891 2.027 sum -1.568 7.050 26.911 27.863 Atomic orbital electron populations 1.21641 0.94939 1.00689 1.01038 1.21001 0.96215 0.98874 0.93205 0.92676 1.19005 0.94159 0.94591 0.92725 1.21659 1.34311 1.08458 0.92040 0.92125 1.25964 0.95334 0.96136 1.02696 1.70110 1.40349 1.22963 1.24194 0.85451 0.78051 0.78884 0.78992 1.18585 1.20613 1.20493 1.21837 0.99467 0.94129 0.89407 1.60650 1.19774 1.50074 1.00853 1.22458 0.95364 0.96439 0.88981 0.93107 1.22517 0.96005 0.98529 0.98273 1.23018 0.94259 0.96093 0.93926 1.64912 1.07718 1.26108 1.24188 1.21242 0.94552 0.91694 0.96508 1.19816 0.98489 0.95755 0.94982 1.21218 0.98258 0.99687 0.93656 1.21443 0.96741 0.95619 1.00802 1.21455 1.00085 0.97468 0.95570 1.21375 0.98213 1.00313 0.94961 1.21229 0.97517 0.95726 0.99841 1.22584 0.94123 0.97100 0.90495 0.92240 1.21712 1.00247 0.95981 1.00837 0.91563 0.93648 0.94007 0.99627 0.99186 0.92966 0.95837 0.92720 0.83605 0.90758 0.91618 0.93980 0.90691 0.94025 0.88946 0.85121 0.84240 0.84321 0.84897 0.86541 0.92205 0.91541 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.77 71.98 0.63 -3.89 16 2 C -0.07 -3.02 2.55 -10.79 -0.03 -3.05 16 3 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.03 1.73 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.94 8.41 25.60 0.22 -29.72 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.55 13.29 21.44 0.28 -57.27 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.08 2.78 5.00 86.30 0.43 3.21 16 14 N -0.68 -18.85 6.28 -487.03 -3.06 -21.90 16 15 C 0.08 1.87 2.97 45.79 0.14 2.01 16 16 H 0.05 1.28 7.36 -2.39 -0.02 1.26 16 17 C -0.11 -2.76 6.76 31.80 0.22 -2.54 16 18 C 0.05 1.19 4.97 86.65 0.43 1.63 16 19 N -0.50 -10.00 5.02 -862.62 -4.33 -14.33 16 20 C 0.09 1.53 5.19 85.56 0.44 1.98 16 21 C -0.09 -1.61 4.59 -19.86 -0.09 -1.70 16 22 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 24 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.12 -2.24 8.34 22.27 0.19 -2.06 16 27 C 0.07 1.31 2.77 45.06 0.12 1.43 16 28 H 0.06 1.20 6.92 -2.39 -0.02 1.18 16 29 C -0.13 -2.22 9.32 71.98 0.67 -1.55 16 30 H 0.07 1.91 6.68 -2.39 -0.02 1.89 16 31 H 0.04 1.78 6.95 -2.39 -0.02 1.76 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.02 0.81 8.07 -2.39 -0.02 0.79 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.34 8.74 6.29 -89.69 -0.56 8.18 16 39 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 41 H 0.04 0.98 7.09 -2.39 -0.02 0.97 16 42 H 0.07 1.66 7.72 -2.39 -0.02 1.64 16 43 H 0.04 0.76 7.76 -2.39 -0.02 0.74 16 44 H 0.09 1.41 8.08 -2.39 -0.02 1.39 16 45 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 46 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.12 2.09 7.39 -2.91 -0.02 2.07 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.17 404.05 0.07 -64.10 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.30 Total: 21.37 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 4.85 Total: -38.77 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -7.10 Total: -93.50 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.17 0.07 -64.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602665183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.607 kcal (2) G-P(sol) polarization free energy of solvation -64.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds