Wall clock time and date at job start Tue Mar 31 2020 11:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 C 1.53005 * 109.46861 * 240.00105 * 2 1 3 5 5 C 1.50697 * 109.47107 * 65.00071 * 4 2 1 6 6 H 1.08000 * 120.00263 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99859 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47404 * 59.99814 * 9 7 5 11 11 H 1.48502 * 109.47122 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47384 * 299.99805 * 9 7 5 13 13 C 1.52995 * 109.47124 * 120.00376 * 2 1 3 14 14 N 1.46904 * 109.46863 * 297.14265 * 13 2 1 15 15 C 1.46952 * 111.00224 * 294.00687 * 14 13 2 16 16 C 1.53053 * 109.36475 * 176.81022 * 15 14 13 17 17 N 1.46965 * 109.36143 * 58.40239 * 16 15 14 18 18 C 1.46904 * 110.99700 * 176.80919 * 17 16 15 19 19 C 1.50710 * 109.46886 * 66.04690 * 18 17 16 20 20 C 1.38236 * 119.99635 * 269.72087 * 19 18 17 21 21 C 1.38238 * 119.99675 * 179.78602 * 20 19 18 22 22 C 1.38237 * 119.99861 * 0.46859 * 21 20 19 23 23 C 1.38231 * 120.00002 * 359.76882 * 22 21 20 24 24 C 1.38224 * 119.99842 * 89.99903 * 19 18 17 25 25 C 1.46954 * 110.87887 * 300.67462 * 17 16 15 26 26 H 1.08995 * 109.49325 * 299.35662 * 25 17 16 27 27 C 1.53003 * 109.48747 * 179.31299 * 25 17 16 28 28 C 1.46961 * 110.99884 * 170.20400 * 14 13 2 29 29 H 1.09001 * 109.47276 * 294.72648 * 1 2 3 30 30 H 1.09001 * 109.47418 * 54.72289 * 1 2 3 31 31 H 1.08997 * 109.47639 * 174.72539 * 1 2 3 32 32 H 1.09004 * 109.46582 * 185.00041 * 4 2 1 33 33 H 1.08994 * 109.46792 * 304.99629 * 4 2 1 34 34 H 0.96997 * 120.00291 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47251 * 57.14299 * 13 2 1 36 36 H 1.08997 * 109.47068 * 177.15011 * 13 2 1 37 37 H 1.09005 * 109.48886 * 296.77845 * 15 14 13 38 38 H 1.08998 * 109.49283 * 56.82057 * 15 14 13 39 39 H 1.08998 * 109.48844 * 178.36477 * 16 15 14 40 40 H 1.09000 * 109.49258 * 298.41351 * 16 15 14 41 41 H 1.08996 * 109.47051 * 186.04219 * 18 17 16 42 42 H 1.08999 * 109.47132 * 306.05033 * 18 17 16 43 43 H 1.07997 * 120.00185 * 0.02562 * 20 19 18 44 44 H 1.07995 * 120.00117 * 180.25543 * 21 20 19 45 45 H 1.08002 * 119.99859 * 179.78239 * 22 21 20 46 46 H 1.08000 * 120.00254 * 179.97438 * 23 22 21 47 47 H 1.08006 * 120.00646 * 359.97438 * 24 19 18 48 48 H 1.08998 * 109.46886 * 59.99858 * 27 25 17 49 49 H 1.08993 * 109.46969 * 180.02562 * 27 25 17 50 50 H 1.09002 * 109.46957 * 300.00362 * 27 25 17 51 51 H 1.08996 * 109.49101 * 303.16113 * 28 14 13 52 52 H 1.09004 * 109.48735 * 63.22298 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 2.6771 -1.5182 -3.8511 9 14 1.4996 0.5634 -5.2495 10 1 2.0917 1.9239 -5.1865 11 1 1.9944 -0.1367 -6.4621 12 1 0.0196 0.6701 -5.3096 13 6 2.0400 -0.7213 1.2492 14 7 1.6074 0.0099 2.4476 15 6 2.2484 1.3303 2.5189 16 6 1.7126 2.0895 3.7351 17 7 1.9805 1.3108 4.9524 18 6 1.5480 2.0420 6.1508 19 6 0.0476 2.1836 6.1387 20 6 -0.5378 3.2857 5.5441 21 6 -1.9142 3.4134 5.5291 22 6 -2.7047 2.4437 6.1171 23 6 -2.1191 1.3441 6.7160 24 6 -0.7428 1.2143 6.7271 25 6 1.3395 -0.0096 4.8811 26 1 0.2608 0.1144 4.7861 27 6 1.6525 -0.7984 6.1542 28 6 1.8752 -0.7688 3.6649 29 1 -0.3634 0.4299 0.9334 30 1 -0.3634 0.5935 -0.8389 31 1 -0.3634 -1.0233 -0.0945 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 2.9250 -1.8408 -4.7317 35 1 1.6354 -1.7331 1.2751 36 1 3.1287 -0.7658 1.2240 37 1 3.3272 1.2063 2.6139 38 1 2.0254 1.8923 1.6119 39 1 2.2080 3.0578 3.8065 40 1 0.6382 2.2378 3.6270 41 1 1.8539 1.4931 7.0414 42 1 2.0062 3.0310 6.1582 43 1 0.0800 4.0451 5.0879 44 1 -2.3717 4.2723 5.0609 45 1 -3.7799 2.5453 6.1084 46 1 -2.7366 0.5868 7.1758 47 1 -0.2853 0.3552 7.1953 48 1 1.2723 -0.2563 7.0201 49 1 1.1773 -1.7778 6.1008 50 1 2.7312 -0.9229 6.2485 51 1 1.3800 -1.7371 3.5935 52 1 2.9498 -0.9167 3.7729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602688337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:21 Heat of formation + Delta-G solvation = 25.106817 kcal Electronic energy + Delta-G solvation = -27339.167131 eV Core-core repulsion = 23916.887880 eV Total energy + Delta-G solvation = -3422.279250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42489 -38.71092 -36.55071 -34.18237 -32.73862 -32.11342 -31.16192 -30.96639 -28.31319 -27.08654 -26.47296 -25.31140 -23.70386 -23.07122 -22.44844 -21.91548 -21.06772 -19.39923 -18.71701 -16.98183 -16.43434 -15.98831 -15.86770 -15.43088 -15.19631 -14.82059 -14.65857 -14.44724 -14.37360 -13.86333 -13.65122 -13.48827 -12.81307 -12.75108 -12.68354 -12.29378 -12.21004 -12.15767 -12.04602 -11.86791 -11.42731 -11.31579 -11.22144 -11.14986 -11.00083 -10.82849 -10.76698 -10.68497 -10.53979 -10.26007 -10.14233 -9.55192 -9.08475 -9.07700 -8.94644 -8.91581 -8.41318 -8.29552 -7.93697 -5.94611 -3.95612 1.13982 1.21273 3.36186 3.40419 3.42989 3.54451 3.89140 4.16769 4.50883 4.57592 4.60373 4.78801 4.82559 4.93560 4.95730 5.02809 5.23272 5.29316 5.34147 5.41030 5.44128 5.45293 5.53216 5.54082 5.59609 5.65641 5.74788 5.79752 5.82141 5.85639 5.95249 5.97237 6.10399 6.13644 6.22108 6.23084 6.27754 6.32930 6.38183 6.44698 6.59430 6.74760 6.80918 6.92490 6.99444 7.08114 7.19626 7.24876 7.44867 7.49958 7.72870 7.89604 8.05880 8.50222 9.10628 9.67528 11.16972 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002856 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.827053 B = 9801.725577 C =10516.596463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.535 5.535 15 C 0.055 3.945 16 C 0.054 3.946 17 N -0.523 5.523 18 C 0.089 3.911 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.113 4.113 25 C 0.080 3.920 26 H 0.057 0.943 27 C -0.151 4.151 28 C 0.062 3.938 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.572 6.525 24.936 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.259 5.259 15 C -0.073 4.073 16 C -0.074 4.074 17 N -0.246 5.246 18 C -0.039 4.039 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.028 4.028 26 H 0.075 0.925 27 C -0.209 4.209 28 C -0.066 4.066 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.451 6.387 24.778 26.162 hybrid contribution -0.295 0.429 -1.041 1.164 sum -5.746 6.816 23.737 25.356 Atomic orbital electron populations 1.21558 0.95811 1.00642 0.99812 1.21213 0.95902 0.98973 0.93805 0.92712 1.19120 0.95869 0.95513 0.90450 1.21199 1.34571 1.08243 0.91009 0.92684 1.25014 0.95359 0.95099 0.99054 1.69953 1.39056 1.21286 1.23440 0.86701 0.78894 0.80115 0.82536 1.20322 1.21392 1.20286 1.22282 0.97274 0.97484 0.89458 1.62177 1.58498 1.03175 1.02093 1.22176 0.96477 0.90973 0.97658 1.22242 0.99981 0.96170 0.88973 1.62614 1.56860 1.03027 1.02076 1.21292 0.88523 0.99545 0.94526 1.20656 0.97657 0.94998 0.98642 1.21080 0.94935 0.97560 0.99064 1.21157 0.93888 0.99211 0.99520 1.21154 0.99775 0.94611 0.98386 1.21150 0.94961 0.97976 0.99862 1.21241 0.93741 0.98710 0.99469 1.21698 0.97551 0.88755 0.94818 0.92522 1.21999 1.02486 0.99670 0.96724 1.22151 0.98918 0.96432 0.89140 0.93859 0.93156 0.94194 0.96992 0.96639 0.93070 0.91390 0.95342 0.94462 0.89591 0.90757 0.93336 0.89677 0.90079 0.86262 0.86177 0.86294 0.86250 0.85803 0.92157 0.92073 0.91829 0.90715 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.85 37.16 0.33 -2.09 16 2 C -0.08 -1.67 2.23 -90.62 -0.20 -1.87 16 3 H 0.05 1.16 6.36 -51.93 -0.33 0.83 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.51 8.47 -34.44 -0.29 -14.80 16 6 H 0.05 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.11 4.37 -3.82 -0.02 1.10 16 14 N -0.54 -8.26 3.98 -234.47 -0.93 -9.20 16 15 C 0.06 0.80 5.41 -3.77 -0.02 0.78 16 16 C 0.05 0.66 5.08 -3.76 -0.02 0.64 16 17 N -0.52 -5.82 4.73 -227.91 -1.08 -6.90 16 18 C 0.09 0.81 5.17 -4.97 -0.03 0.79 16 19 C -0.12 -1.14 4.01 -104.62 -0.42 -1.56 16 20 C -0.11 -1.05 8.07 -39.58 -0.32 -1.37 16 21 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 24 C -0.11 -1.06 7.83 -39.58 -0.31 -1.37 16 25 C 0.08 0.91 1.94 -67.65 -0.13 0.78 16 26 H 0.06 0.74 6.27 -51.93 -0.33 0.41 16 27 C -0.15 -1.34 8.37 37.16 0.31 -1.03 16 28 C 0.06 0.83 4.89 -3.76 -0.02 0.81 16 29 H 0.04 0.79 7.54 -51.93 -0.39 0.40 16 30 H 0.05 1.06 7.11 -51.93 -0.37 0.69 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 36 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.33 6.28 -51.93 -0.33 1.00 16 39 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 40 H 0.05 0.64 6.39 -51.93 -0.33 0.31 16 41 H 0.08 0.70 6.33 -51.93 -0.33 0.37 16 42 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 43 H 0.12 1.04 8.04 -52.49 -0.42 0.62 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.12 1.00 5.39 -52.48 -0.28 0.72 16 48 H 0.06 0.47 4.08 -51.93 -0.21 0.25 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 52 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -30.50 388.30 -12.14 -42.64 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -9.15 Total: -1.13 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.55 Total: -21.63 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -1.28 Total: -42.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.50 -12.14 -42.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.752 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds