Wall clock time and date at job start Tue Mar 31 2020 11:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 C 1.53005 * 109.46861 * 240.00105 * 2 1 3 5 5 C 1.50697 * 109.47107 * 65.00071 * 4 2 1 6 6 H 1.08000 * 120.00263 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99859 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47404 * 59.99814 * 9 7 5 11 11 H 1.48502 * 109.47122 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47384 * 299.99805 * 9 7 5 13 13 C 1.52995 * 109.47124 * 120.00376 * 2 1 3 14 14 N 1.46904 * 109.46863 * 297.14265 * 13 2 1 15 15 C 1.46952 * 111.00224 * 294.00687 * 14 13 2 16 16 C 1.53053 * 109.36475 * 176.81022 * 15 14 13 17 17 N 1.46965 * 109.36143 * 58.40239 * 16 15 14 18 18 C 1.46904 * 110.99700 * 176.80919 * 17 16 15 19 19 C 1.50710 * 109.46886 * 66.04690 * 18 17 16 20 20 C 1.38236 * 119.99635 * 269.72087 * 19 18 17 21 21 C 1.38238 * 119.99675 * 179.78602 * 20 19 18 22 22 C 1.38237 * 119.99861 * 0.46859 * 21 20 19 23 23 C 1.38231 * 120.00002 * 359.76882 * 22 21 20 24 24 C 1.38224 * 119.99842 * 89.99903 * 19 18 17 25 25 C 1.46954 * 110.87887 * 300.67462 * 17 16 15 26 26 H 1.08995 * 109.49325 * 299.35662 * 25 17 16 27 27 C 1.53003 * 109.48747 * 179.31299 * 25 17 16 28 28 C 1.46961 * 110.99884 * 170.20400 * 14 13 2 29 29 H 1.09001 * 109.47276 * 294.72648 * 1 2 3 30 30 H 1.09001 * 109.47418 * 54.72289 * 1 2 3 31 31 H 1.08997 * 109.47639 * 174.72539 * 1 2 3 32 32 H 1.09004 * 109.46582 * 185.00041 * 4 2 1 33 33 H 1.08994 * 109.46792 * 304.99629 * 4 2 1 34 34 H 0.96997 * 120.00291 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47251 * 57.14299 * 13 2 1 36 36 H 1.08997 * 109.47068 * 177.15011 * 13 2 1 37 37 H 1.09005 * 109.48886 * 296.77845 * 15 14 13 38 38 H 1.08998 * 109.49283 * 56.82057 * 15 14 13 39 39 H 1.08998 * 109.48844 * 178.36477 * 16 15 14 40 40 H 1.09000 * 109.49258 * 298.41351 * 16 15 14 41 41 H 1.08996 * 109.47051 * 186.04219 * 18 17 16 42 42 H 1.08999 * 109.47132 * 306.05033 * 18 17 16 43 43 H 1.07997 * 120.00185 * 0.02562 * 20 19 18 44 44 H 1.07995 * 120.00117 * 180.25543 * 21 20 19 45 45 H 1.08002 * 119.99859 * 179.78239 * 22 21 20 46 46 H 1.08000 * 120.00254 * 179.97438 * 23 22 21 47 47 H 1.08006 * 120.00646 * 359.97438 * 24 19 18 48 48 H 1.08998 * 109.46886 * 59.99858 * 27 25 17 49 49 H 1.08993 * 109.46969 * 180.02562 * 27 25 17 50 50 H 1.09002 * 109.46957 * 300.00362 * 27 25 17 51 51 H 1.08996 * 109.49101 * 303.16113 * 28 14 13 52 52 H 1.09004 * 109.48735 * 63.22298 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 2.6771 -1.5182 -3.8511 9 14 1.4996 0.5634 -5.2495 10 1 2.0917 1.9239 -5.1865 11 1 1.9944 -0.1367 -6.4621 12 1 0.0196 0.6701 -5.3096 13 6 2.0400 -0.7213 1.2492 14 7 1.6074 0.0099 2.4476 15 6 2.2484 1.3303 2.5189 16 6 1.7126 2.0895 3.7351 17 7 1.9805 1.3108 4.9524 18 6 1.5480 2.0420 6.1508 19 6 0.0476 2.1836 6.1387 20 6 -0.5378 3.2857 5.5441 21 6 -1.9142 3.4134 5.5291 22 6 -2.7047 2.4437 6.1171 23 6 -2.1191 1.3441 6.7160 24 6 -0.7428 1.2143 6.7271 25 6 1.3395 -0.0096 4.8811 26 1 0.2608 0.1144 4.7861 27 6 1.6525 -0.7984 6.1542 28 6 1.8752 -0.7688 3.6649 29 1 -0.3634 0.4299 0.9334 30 1 -0.3634 0.5935 -0.8389 31 1 -0.3634 -1.0233 -0.0945 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 2.9250 -1.8408 -4.7317 35 1 1.6354 -1.7331 1.2751 36 1 3.1287 -0.7658 1.2240 37 1 3.3272 1.2063 2.6139 38 1 2.0254 1.8923 1.6119 39 1 2.2080 3.0578 3.8065 40 1 0.6382 2.2378 3.6270 41 1 1.8539 1.4931 7.0414 42 1 2.0062 3.0310 6.1582 43 1 0.0800 4.0451 5.0879 44 1 -2.3717 4.2723 5.0609 45 1 -3.7799 2.5453 6.1084 46 1 -2.7366 0.5868 7.1758 47 1 -0.2853 0.3552 7.1953 48 1 1.2723 -0.2563 7.0201 49 1 1.1773 -1.7778 6.1008 50 1 2.7312 -0.9229 6.2485 51 1 1.3800 -1.7371 3.5935 52 1 2.9498 -0.9167 3.7729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602688337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:20 Heat of formation + Delta-G solvation = 8.358265 kcal Electronic energy + Delta-G solvation = -27339.893402 eV Core-core repulsion = 23916.887880 eV Total energy + Delta-G solvation = -3423.005522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27569 -39.66441 -37.83990 -35.77134 -34.08804 -33.54436 -32.14525 -31.66377 -29.44516 -28.77729 -27.72341 -26.55969 -25.12798 -24.23624 -23.30295 -23.02609 -22.06607 -20.39816 -20.33285 -18.51104 -17.69111 -17.10635 -16.73804 -16.56539 -16.19350 -16.09779 -15.93928 -15.64743 -15.59975 -15.05081 -14.72410 -14.45009 -14.28509 -14.10984 -13.61775 -13.47218 -13.35042 -13.22826 -13.13951 -12.92241 -12.82436 -12.77103 -12.67673 -12.44708 -12.23926 -12.14356 -12.06709 -11.92165 -11.86806 -11.73798 -11.44754 -11.33839 -11.05700 -10.82186 -10.52687 -9.76312 -9.65007 -9.33665 -9.17709 -8.17273 -6.26631 0.45216 0.53075 1.39731 1.42668 1.50312 2.41917 2.81101 2.94432 3.08344 3.15973 3.81745 3.89510 3.94144 3.99401 4.11051 4.16656 4.24011 4.28361 4.28879 4.39543 4.42451 4.48153 4.51918 4.58197 4.64433 4.72976 4.74547 4.81014 4.83644 4.86245 4.89286 4.90497 4.99989 5.04117 5.07229 5.13530 5.17515 5.22540 5.27312 5.39704 5.46228 5.47714 5.54468 5.59279 5.65615 5.67420 5.79543 5.88297 5.99963 6.06907 6.15071 6.20674 6.24670 6.32429 6.88932 7.41578 8.94724 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002856 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.827053 B = 9801.725577 C =10516.596463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 H 0.053 0.947 4 C 0.035 3.965 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.074 3.926 14 N -0.537 5.537 15 C 0.055 3.945 16 C 0.064 3.936 17 N -0.527 5.527 18 C 0.092 3.908 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.121 4.121 25 C 0.087 3.913 26 H 0.044 0.956 27 C -0.145 4.145 28 C 0.060 3.940 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.033 0.967 32 H -0.016 1.016 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.018 0.982 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.078 0.922 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 7.590 26.308 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.053 4.053 14 N -0.261 5.261 15 C -0.073 4.073 16 C -0.064 4.064 17 N -0.250 5.250 18 C -0.035 4.035 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.021 4.021 26 H 0.062 0.938 27 C -0.203 4.203 28 C -0.068 4.068 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.002 0.998 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.376 7.464 26.177 27.957 hybrid contribution -0.005 0.082 -1.431 1.433 sum -6.380 7.546 24.746 26.647 Atomic orbital electron populations 1.21425 0.94763 1.00168 1.00214 1.21006 0.96566 0.98372 0.92929 0.92895 1.18994 0.93955 0.94642 0.92676 1.21595 1.34518 1.08574 0.92078 0.92191 1.25947 0.95221 0.96096 1.02626 1.70093 1.40199 1.22989 1.24351 0.85569 0.78949 0.78798 0.78159 1.19215 1.20970 1.19222 1.21995 0.96430 0.97268 0.89639 1.62149 1.58437 1.03578 1.01934 1.22186 0.96099 0.90528 0.98497 1.22124 0.99345 0.96524 0.88440 1.62622 1.56997 1.03040 1.02323 1.21341 0.88375 0.99969 0.93849 1.20737 0.97879 0.95200 0.98938 1.21266 0.95324 0.97969 0.99336 1.21408 0.94064 0.99868 0.99782 1.21440 1.00744 0.94589 0.98172 1.21440 0.95277 0.98405 0.99819 1.21447 0.94004 0.98992 0.99445 1.21619 0.96544 0.89042 0.94903 0.93785 1.21960 1.02596 0.99902 0.95795 1.22252 0.98819 0.96771 0.88950 0.91905 0.94437 0.94736 0.99764 0.99192 0.92920 0.91558 0.96393 0.95198 0.90870 0.89158 0.94221 0.88395 0.89201 0.85686 0.85061 0.84793 0.84618 0.84656 0.90654 0.91216 0.91901 0.90368 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.85 71.98 0.64 -3.68 16 2 C -0.07 -2.97 2.23 -10.79 -0.02 -2.99 16 3 H 0.05 2.27 6.36 -2.39 -0.02 2.25 16 4 C 0.03 1.88 4.45 29.85 0.13 2.01 16 5 C -0.53 -30.49 8.47 25.60 0.22 -30.28 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -57.98 13.29 21.45 0.28 -57.70 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 C 0.07 2.71 4.37 86.30 0.38 3.09 16 14 N -0.54 -16.35 3.98 -895.71 -3.57 -19.91 16 15 C 0.06 1.57 5.41 86.31 0.47 2.04 16 16 C 0.06 1.46 5.08 86.31 0.44 1.90 16 17 N -0.53 -10.75 4.73 -874.98 -4.14 -14.89 16 18 C 0.09 1.47 5.17 85.56 0.44 1.91 16 19 C -0.13 -2.20 4.01 -19.86 -0.08 -2.28 16 20 C -0.12 -2.17 8.07 22.27 0.18 -2.00 16 21 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 22 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 23 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 24 C -0.12 -2.01 7.83 22.27 0.17 -1.83 16 25 C 0.09 1.84 1.94 44.92 0.09 1.92 16 26 H 0.04 1.07 6.27 -2.39 -0.01 1.05 16 27 C -0.14 -2.23 8.37 71.98 0.60 -1.62 16 28 C 0.06 1.55 4.89 86.31 0.42 1.97 16 29 H 0.06 2.24 7.54 -2.39 -0.02 2.23 16 30 H 0.04 1.56 7.11 -2.39 -0.02 1.54 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 35 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 36 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 37 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 2.25 6.28 -2.39 -0.01 2.24 16 39 H 0.09 1.77 8.11 -2.39 -0.02 1.75 16 40 H 0.04 0.99 6.39 -2.39 -0.02 0.98 16 41 H 0.10 1.33 6.33 -2.39 -0.02 1.31 16 42 H 0.09 1.29 8.04 -2.39 -0.02 1.27 16 43 H 0.13 2.01 8.04 -2.91 -0.02 1.98 16 44 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.14 1.84 5.39 -2.91 -0.02 1.82 16 48 H 0.07 0.94 4.08 -2.39 -0.01 0.93 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 52 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -65.80 388.30 0.68 -65.13 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.87 Total: 15.84 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 5.21 Total: -35.50 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -7.42 Total: -92.50 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.80 0.68 -65.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.486 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds