Wall clock time and date at job start Tue Mar 31 2020 11:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46541 * 2 1 4 4 C 1.52995 * 109.47278 * 119.99950 * 2 1 3 5 5 C 1.50702 * 109.47157 * 295.00501 * 4 2 1 6 6 H 1.08006 * 120.00210 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00123 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00098 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46917 * 59.99212 * 9 7 5 11 11 H 1.48500 * 109.47156 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46789 * 299.99292 * 9 7 5 13 13 C 1.52995 * 109.47246 * 240.00184 * 2 1 3 14 14 N 1.46903 * 109.47274 * 64.99806 * 13 2 1 15 15 C 1.46963 * 110.99595 * 66.17850 * 14 13 2 16 16 C 1.53056 * 109.35944 * 183.16796 * 15 14 13 17 17 N 1.46956 * 109.38342 * 301.62902 * 16 15 14 18 18 C 1.46899 * 111.00293 * 183.17592 * 17 16 15 19 19 C 1.50699 * 109.47352 * 293.95822 * 18 17 16 20 20 C 1.38232 * 120.00024 * 269.72344 * 19 18 17 21 21 C 1.38236 * 120.00186 * 179.80922 * 20 19 18 22 22 C 1.38235 * 119.99663 * 0.39606 * 21 20 19 23 23 C 1.38232 * 120.00319 * 359.85732 * 22 21 20 24 24 C 1.38236 * 120.00036 * 89.99589 * 19 18 17 25 25 C 1.46962 * 110.87987 * 59.31148 * 17 16 15 26 26 H 1.09001 * 109.48625 * 60.64585 * 25 17 16 27 27 C 1.52999 * 109.48863 * 180.68966 * 25 17 16 28 28 C 1.46956 * 111.00102 * 189.99834 * 14 13 2 29 29 H 1.08997 * 109.47319 * 299.99809 * 1 2 3 30 30 H 1.09000 * 109.46974 * 60.00549 * 1 2 3 31 31 H 1.09003 * 109.46588 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47070 * 55.00006 * 4 2 1 33 33 H 1.09000 * 109.47286 * 175.00208 * 4 2 1 34 34 H 0.97010 * 120.00077 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47391 * 304.99822 * 13 2 1 36 36 H 1.08997 * 109.47145 * 184.99751 * 13 2 1 37 37 H 1.08992 * 109.47287 * 63.21185 * 15 14 13 38 38 H 1.08994 * 109.50466 * 303.13858 * 15 14 13 39 39 H 1.09002 * 109.48813 * 181.65179 * 16 15 14 40 40 H 1.09002 * 109.48870 * 61.61068 * 16 15 14 41 41 H 1.09005 * 109.46301 * 53.95555 * 18 17 16 42 42 H 1.08995 * 109.47177 * 173.95062 * 18 17 16 43 43 H 1.08004 * 120.00095 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.00202 * 180.23035 * 21 20 19 45 45 H 1.08001 * 119.99899 * 179.83482 * 22 21 20 46 46 H 1.07999 * 120.00458 * 179.97438 * 23 22 21 47 47 H 1.08004 * 119.99775 * 359.97438 * 24 19 18 48 48 H 1.09002 * 109.47294 * 60.00441 * 27 25 17 49 49 H 1.09004 * 109.47142 * 179.97438 * 27 25 17 50 50 H 1.09001 * 109.47096 * 299.99916 * 27 25 17 51 51 H 1.09002 * 109.48806 * 56.84348 * 28 14 13 52 52 H 1.09003 * 109.49203 * 296.77991 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6764 -1.5186 3.8511 9 14 1.4995 0.5634 5.2496 10 1 0.0196 0.6700 5.3095 11 1 1.9944 -0.1367 6.4621 12 1 2.0917 1.9237 5.1866 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0375 -2.4456 15 6 2.3368 1.3367 -2.4910 16 6 1.8466 2.1268 -3.7067 17 7 2.1079 1.3534 -4.9287 18 6 1.7192 2.1120 -6.1251 19 6 0.2244 2.3037 -6.1348 20 6 -0.5880 1.3710 -6.7519 21 6 -1.9594 1.5447 -6.7574 22 6 -2.5177 2.6555 -6.1529 23 6 -1.7049 3.5909 -5.5404 24 6 -0.3338 3.4152 -5.5316 25 6 1.4221 0.0544 -4.8830 26 1 0.3467 0.2135 -4.8035 27 6 1.7290 -0.7300 -6.1603 28 6 1.9126 -0.7359 -3.6676 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2056 34 1 2.9237 -1.8416 4.7318 35 1 1.6055 -1.7198 -1.2952 36 1 3.1263 -0.7994 -1.2056 37 1 3.4121 1.1776 -2.5701 38 1 2.1174 1.8958 -1.5814 39 1 2.3750 3.0787 -3.7590 40 1 0.7761 2.3098 -3.6140 41 1 2.2102 3.0851 -6.1136 42 1 2.0210 1.5632 -7.0172 43 1 -0.1516 0.5050 -7.2274 44 1 -2.5944 0.8141 -7.2362 45 1 -3.5889 2.7927 -6.1595 46 1 -2.1410 4.4590 -5.0685 47 1 0.3013 4.1459 -5.0529 48 1 2.8044 -0.8897 -6.2391 49 1 1.2207 -1.6936 -6.1259 50 1 1.3810 -0.1658 -7.0256 51 1 1.3842 -1.6879 -3.6154 52 1 2.9832 -0.9186 -3.7605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602688342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:23 Heat of formation + Delta-G solvation = 24.840883 kcal Electronic energy + Delta-G solvation = -27333.458788 eV Core-core repulsion = 23911.168006 eV Total energy + Delta-G solvation = -3422.290782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42305 -38.70809 -36.54739 -34.18816 -32.73733 -32.11498 -31.16468 -30.96616 -28.31290 -27.08146 -26.48501 -25.30460 -23.69800 -23.07725 -22.45040 -21.91449 -21.06382 -19.39631 -18.72565 -16.98135 -16.43782 -15.98637 -15.86746 -15.42961 -15.19445 -14.82269 -14.65567 -14.44855 -14.36644 -13.86619 -13.65084 -13.47634 -12.81187 -12.75238 -12.68654 -12.29189 -12.22084 -12.15912 -12.04431 -11.86820 -11.43695 -11.32053 -11.22306 -11.14880 -10.99993 -10.82420 -10.76858 -10.67397 -10.54608 -10.25062 -10.14878 -9.55060 -9.08851 -9.07765 -8.94680 -8.91662 -8.41155 -8.29681 -7.93528 -5.94725 -3.95733 1.13963 1.21277 3.36138 3.40368 3.42922 3.54460 3.89228 4.16857 4.50763 4.57578 4.60443 4.78801 4.82579 4.93611 4.95746 5.02926 5.23283 5.29336 5.34191 5.40911 5.44211 5.45418 5.53208 5.54175 5.59667 5.65745 5.74778 5.79779 5.82154 5.85682 5.95276 5.97325 6.10460 6.13686 6.22256 6.23127 6.27794 6.32905 6.38198 6.44153 6.59606 6.74441 6.80906 6.92433 6.99550 7.07209 7.19290 7.25063 7.45015 7.50158 7.72960 7.89509 8.05744 8.50014 9.10459 9.67406 11.16820 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002855 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.844180 B = 9803.949590 C =10516.463052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.062 3.938 14 N -0.535 5.535 15 C 0.055 3.945 16 C 0.054 3.946 17 N -0.523 5.523 18 C 0.089 3.911 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.108 4.108 25 C 0.080 3.920 26 H 0.057 0.943 27 C -0.151 4.151 28 C 0.062 3.938 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.074 0.926 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 6.796 -24.902 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.260 5.260 15 C -0.073 4.073 16 C -0.074 4.074 17 N -0.246 5.246 18 C -0.039 4.039 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.126 4.126 25 C -0.028 4.028 26 H 0.075 0.925 27 C -0.209 4.209 28 C -0.066 4.066 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.082 6.656 -24.745 26.123 hybrid contribution -0.298 0.429 1.029 1.154 sum -5.380 7.084 -23.715 25.329 Atomic orbital electron populations 1.21565 0.95837 1.00424 1.00007 1.21215 0.95870 0.99026 0.93787 0.92652 1.19114 0.95866 0.95532 0.90451 1.21200 1.34575 1.08256 0.91009 0.92668 1.25013 0.95353 0.95096 0.99050 1.69956 1.39087 1.21245 1.23434 0.86702 0.78898 0.80120 0.82542 1.20281 1.21389 1.20318 1.22293 0.97604 0.97113 0.89482 1.62171 1.57966 1.03813 1.02023 1.22179 0.96231 0.91183 0.97693 1.22244 1.00082 0.96123 0.88923 1.62608 1.56508 1.03510 1.01954 1.21289 0.88873 0.99168 0.94553 1.20657 0.97700 0.95097 0.98497 1.21237 0.93642 0.98891 0.99381 1.21149 0.95114 0.97807 0.99881 1.21153 0.99739 0.94722 0.98313 1.21156 0.93794 0.99369 0.99458 1.21082 0.95130 0.97363 0.99061 1.21698 0.97247 0.89042 0.94826 0.92533 1.21999 1.02491 0.99706 0.96677 1.22150 0.99082 0.96285 0.89115 0.92873 0.94082 0.94291 0.96648 0.96981 0.93070 0.91422 0.95320 0.94449 0.89574 0.90752 0.93339 0.90079 0.89677 0.85816 0.86250 0.86295 0.86175 0.86258 0.91829 0.92079 0.92161 0.90726 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.67 2.26 -90.62 -0.21 -1.88 16 3 H 0.06 1.17 6.28 -51.93 -0.33 0.84 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.12 4.35 -3.82 -0.02 1.10 16 14 N -0.54 -8.29 4.16 -234.46 -0.98 -9.26 16 15 C 0.06 0.80 5.42 -3.76 -0.02 0.78 16 16 C 0.05 0.66 5.06 -3.76 -0.02 0.64 16 17 N -0.52 -5.83 4.73 -227.92 -1.08 -6.91 16 18 C 0.09 0.81 5.17 -4.98 -0.03 0.79 16 19 C -0.12 -1.14 4.01 -104.62 -0.42 -1.56 16 20 C -0.11 -1.06 7.84 -39.58 -0.31 -1.37 16 21 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.11 -1.05 8.05 -39.58 -0.32 -1.37 16 25 C 0.08 0.91 1.94 -67.65 -0.13 0.78 16 26 H 0.06 0.74 6.29 -51.93 -0.33 0.41 16 27 C -0.15 -1.35 8.38 37.16 0.31 -1.04 16 28 C 0.06 0.83 4.89 -3.77 -0.02 0.81 16 29 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 30 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.21 8.03 -51.93 -0.42 0.80 16 36 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.33 6.25 -51.93 -0.32 1.01 16 39 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 40 H 0.05 0.64 6.38 -51.93 -0.33 0.31 16 41 H 0.08 0.68 8.04 -51.93 -0.42 0.27 16 42 H 0.08 0.70 6.32 -51.93 -0.33 0.37 16 43 H 0.12 1.00 5.41 -52.48 -0.28 0.72 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.04 8.03 -52.48 -0.42 0.62 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.47 4.07 -51.93 -0.21 0.25 16 51 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 52 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -30.48 388.40 -12.18 -42.66 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -9.15 Total: -1.08 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.55 Total: -21.62 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -1.32 Total: -42.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.48 -12.18 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.498 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds