Wall clock time and date at job start Tue Mar 31 2020 11:30:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09003 * 109.46541 * 2 1
4 4 C 1.52995 * 109.47278 * 119.99950 * 2 1 3
5 5 C 1.50702 * 109.47157 * 295.00501 * 4 2 1
6 6 H 1.08006 * 120.00210 * 359.97438 * 5 4 2
7 7 C 1.37873 * 120.00123 * 180.02562 * 5 4 2
8 8 N 1.31508 * 119.99949 * 359.97438 * 7 5 4
9 9 Si 1.86808 * 120.00098 * 179.97438 * 7 5 4
10 10 H 1.48495 * 109.46917 * 59.99212 * 9 7 5
11 11 H 1.48500 * 109.47156 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.46789 * 299.99292 * 9 7 5
13 13 C 1.52995 * 109.47246 * 240.00184 * 2 1 3
14 14 N 1.46903 * 109.47274 * 64.99806 * 13 2 1
15 15 C 1.46963 * 110.99595 * 66.17850 * 14 13 2
16 16 C 1.53056 * 109.35944 * 183.16796 * 15 14 13
17 17 N 1.46956 * 109.38342 * 301.62902 * 16 15 14
18 18 C 1.46899 * 111.00293 * 183.17592 * 17 16 15
19 19 C 1.50699 * 109.47352 * 293.95822 * 18 17 16
20 20 C 1.38232 * 120.00024 * 269.72344 * 19 18 17
21 21 C 1.38236 * 120.00186 * 179.80922 * 20 19 18
22 22 C 1.38235 * 119.99663 * 0.39606 * 21 20 19
23 23 C 1.38232 * 120.00319 * 359.85732 * 22 21 20
24 24 C 1.38236 * 120.00036 * 89.99589 * 19 18 17
25 25 C 1.46962 * 110.87987 * 59.31148 * 17 16 15
26 26 H 1.09001 * 109.48625 * 60.64585 * 25 17 16
27 27 C 1.52999 * 109.48863 * 180.68966 * 25 17 16
28 28 C 1.46956 * 111.00102 * 189.99834 * 14 13 2
29 29 H 1.08997 * 109.47319 * 299.99809 * 1 2 3
30 30 H 1.09000 * 109.46974 * 60.00549 * 1 2 3
31 31 H 1.09003 * 109.46588 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47070 * 55.00006 * 4 2 1
33 33 H 1.09000 * 109.47286 * 175.00208 * 4 2 1
34 34 H 0.97010 * 120.00077 * 180.02562 * 8 7 5
35 35 H 1.09001 * 109.47391 * 304.99822 * 13 2 1
36 36 H 1.08997 * 109.47145 * 184.99751 * 13 2 1
37 37 H 1.08992 * 109.47287 * 63.21185 * 15 14 13
38 38 H 1.08994 * 109.50466 * 303.13858 * 15 14 13
39 39 H 1.09002 * 109.48813 * 181.65179 * 16 15 14
40 40 H 1.09002 * 109.48870 * 61.61068 * 16 15 14
41 41 H 1.09005 * 109.46301 * 53.95555 * 18 17 16
42 42 H 1.08995 * 109.47177 * 173.95062 * 18 17 16
43 43 H 1.08004 * 120.00095 * 359.97438 * 20 19 18
44 44 H 1.08002 * 120.00202 * 180.23035 * 21 20 19
45 45 H 1.08001 * 119.99899 * 179.83482 * 22 21 20
46 46 H 1.07999 * 120.00458 * 179.97438 * 23 22 21
47 47 H 1.08004 * 119.99775 * 359.97438 * 24 19 18
48 48 H 1.09002 * 109.47294 * 60.00441 * 27 25 17
49 49 H 1.09004 * 109.47142 * 179.97438 * 27 25 17
50 50 H 1.09001 * 109.47096 * 299.99916 * 27 25 17
51 51 H 1.09002 * 109.48806 * 56.84348 * 28 14 13
52 52 H 1.09003 * 109.49203 * 296.77991 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.6413 0.0570 2.4766
6 1 1.0805 0.9746 2.3757
7 6 1.9932 -0.4017 3.7282
8 7 2.6764 -1.5186 3.8511
9 14 1.4995 0.5634 5.2496
10 1 0.0196 0.6700 5.3095
11 1 1.9944 -0.1367 6.4621
12 1 2.0917 1.9237 5.1866
13 6 2.0400 -0.7212 -1.2492
14 7 1.6514 0.0375 -2.4456
15 6 2.3368 1.3367 -2.4910
16 6 1.8466 2.1268 -3.7067
17 7 2.1079 1.3534 -4.9287
18 6 1.7192 2.1120 -6.1251
19 6 0.2244 2.3037 -6.1348
20 6 -0.5880 1.3710 -6.7519
21 6 -1.9594 1.5447 -6.7574
22 6 -2.5177 2.6555 -6.1529
23 6 -1.7049 3.5909 -5.5404
24 6 -0.3338 3.4152 -5.5316
25 6 1.4221 0.0544 -4.8830
26 1 0.3467 0.2135 -4.8035
27 6 1.7290 -0.7300 -6.1603
28 6 1.9126 -0.7359 -3.6676
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3632 -1.0277 -0.0005
32 1 1.6054 -1.7198 1.2951
33 1 3.1264 -0.7994 1.2056
34 1 2.9237 -1.8416 4.7318
35 1 1.6055 -1.7198 -1.2952
36 1 3.1263 -0.7994 -1.2056
37 1 3.4121 1.1776 -2.5701
38 1 2.1174 1.8958 -1.5814
39 1 2.3750 3.0787 -3.7590
40 1 0.7761 2.3098 -3.6140
41 1 2.2102 3.0851 -6.1136
42 1 2.0210 1.5632 -7.0172
43 1 -0.1516 0.5050 -7.2274
44 1 -2.5944 0.8141 -7.2362
45 1 -3.5889 2.7927 -6.1595
46 1 -2.1410 4.4590 -5.0685
47 1 0.3013 4.1459 -5.0529
48 1 2.8044 -0.8897 -6.2391
49 1 1.2207 -1.6936 -6.1259
50 1 1.3810 -0.1658 -7.0256
51 1 1.3842 -1.6879 -3.6154
52 1 2.9832 -0.9186 -3.7605
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602688342.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:22
Heat of formation + Delta-G solvation = 7.983873 kcal
Electronic energy + Delta-G solvation = -27334.189763 eV
Core-core repulsion = 23911.168006 eV
Total energy + Delta-G solvation = -3423.021757 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.27499 -39.66230 -37.83929 -35.77511 -34.08923 -33.54668 -32.14717 -31.66451
-29.44846 -28.77203 -27.73361 -26.55196 -25.12800 -24.24166 -23.30305 -23.02427
-22.06426 -20.40983 -20.32971 -18.51096 -17.69085 -17.11064 -16.73925 -16.56583
-16.19712 -16.10094 -15.92016 -15.65341 -15.59716 -15.04892 -14.71610 -14.45508
-14.28927 -14.12175 -13.61880 -13.47390 -13.35085 -13.23235 -13.14682 -12.92243
-12.82556 -12.76491 -12.67727 -12.43344 -12.23819 -12.14842 -12.07099 -11.92191
-11.86799 -11.74168 -11.44577 -11.33832 -11.06017 -10.82193 -10.52639 -9.76384
-9.65081 -9.33710 -9.17841 -8.17217 -6.26551 0.45144 0.53034 1.39801
1.42749 1.50379 2.41943 2.81020 2.94313 3.08236 3.16048 3.81656
3.89352 3.94015 3.99289 4.10896 4.16598 4.24110 4.28300 4.28797
4.39364 4.42328 4.48031 4.51388 4.58270 4.64368 4.72927 4.74558
4.81038 4.83472 4.86385 4.89248 4.90582 4.99692 5.04003 5.07070
5.13546 5.17462 5.22479 5.26397 5.39600 5.45448 5.47978 5.54707
5.59227 5.65557 5.67370 5.79497 5.88385 6.00004 6.06789 6.15014
6.20645 6.24555 6.32387 6.88948 7.41640 8.94749
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.018227 B = 0.002855 C = 0.002662
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1535.844180 B = 9803.949590 C =10516.463052
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.070 4.070
3 H 0.053 0.947
4 C 0.035 3.965
5 C -0.530 4.530
6 H 0.060 0.940
7 C -0.002 4.002
8 N -0.936 5.936
9 Si 0.960 3.040
10 H -0.267 1.267
11 H -0.284 1.284
12 H -0.267 1.267
13 C 0.075 3.925
14 N -0.537 5.537
15 C 0.055 3.945
16 C 0.064 3.936
17 N -0.527 5.527
18 C 0.092 3.908
19 C -0.126 4.126
20 C -0.120 4.120
21 C -0.131 4.131
22 C -0.131 4.131
23 C -0.133 4.133
24 C -0.120 4.120
25 C 0.088 3.912
26 H 0.044 0.956
27 C -0.145 4.145
28 C 0.060 3.940
29 H 0.037 0.963
30 H 0.060 0.940
31 H 0.035 0.965
32 H -0.010 1.010
33 H -0.016 1.016
34 H 0.262 0.738
35 H 0.066 0.934
36 H 0.017 0.983
37 H 0.029 0.971
38 H 0.073 0.927
39 H 0.090 0.910
40 H 0.040 0.960
41 H 0.090 0.910
42 H 0.098 0.902
43 H 0.136 0.864
44 H 0.136 0.864
45 H 0.134 0.866
46 H 0.131 0.869
47 H 0.125 0.875
48 H 0.062 0.938
49 H 0.069 0.931
50 H 0.075 0.925
51 H 0.078 0.922
52 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.119 7.863 -26.291 28.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.089 4.089
3 H 0.071 0.929
4 C -0.003 4.003
5 C -0.568 4.568
6 H 0.078 0.922
7 C -0.199 4.199
8 N -0.576 5.576
9 Si 0.785 3.215
10 H -0.192 1.192
11 H -0.210 1.210
12 H -0.192 1.192
13 C -0.053 4.053
14 N -0.261 5.261
15 C -0.073 4.073
16 C -0.064 4.064
17 N -0.250 5.250
18 C -0.035 4.035
19 C -0.128 4.128
20 C -0.139 4.139
21 C -0.149 4.149
22 C -0.149 4.149
23 C -0.151 4.151
24 C -0.139 4.139
25 C -0.021 4.021
26 H 0.062 0.938
27 C -0.202 4.202
28 C -0.068 4.068
29 H 0.057 0.943
30 H 0.079 0.921
31 H 0.054 0.946
32 H 0.008 0.992
33 H 0.002 0.998
34 H 0.071 0.929
35 H 0.085 0.915
36 H 0.036 0.964
37 H 0.048 0.952
38 H 0.091 0.909
39 H 0.108 0.892
40 H 0.058 0.942
41 H 0.108 0.892
42 H 0.116 0.884
43 H 0.153 0.847
44 H 0.154 0.846
45 H 0.152 0.848
46 H 0.149 0.851
47 H 0.143 0.857
48 H 0.081 0.919
49 H 0.088 0.912
50 H 0.093 0.907
51 H 0.097 0.903
52 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges -6.006 7.736 -26.161 27.934
hybrid contribution -0.007 0.082 1.424 1.426
sum -6.013 7.818 -24.737 26.631
Atomic orbital electron populations
1.21431 0.94770 1.00267 1.00138 1.21009 0.96553 0.98414 0.92909
0.92858 1.18987 0.93943 0.94662 0.92676 1.21597 1.34508 1.08584
0.92072 0.92171 1.25947 0.95219 0.96094 1.02621 1.70097 1.40240
1.22953 1.24341 0.85570 0.78954 0.78798 0.78164 1.19214 1.20975
1.19219 1.22007 0.96691 0.96975 0.89653 1.62147 1.57969 1.04134
1.01866 1.22187 0.95778 0.90814 0.98537 1.22124 0.99536 0.96377
0.88395 1.62617 1.56600 1.03572 1.02206 1.21338 0.88768 0.99540
0.93887 1.20736 0.97920 0.95297 0.98799 1.21444 0.93888 0.99183
0.99355 1.21440 0.95447 0.98194 0.99851 1.21439 1.00696 0.94709
0.98094 1.21407 0.93957 1.00030 0.99727 1.21266 0.95526 0.97767
0.99348 1.21620 0.96296 0.89267 0.94917 0.93790 1.21960 1.02600
0.99956 0.95729 1.22251 0.98947 0.96680 0.88908 0.94348 0.92142
0.94561 0.99194 0.99769 0.92924 0.91506 0.96448 0.95222 0.90876
0.89168 0.94211 0.89214 0.88386 0.84656 0.84605 0.84787 0.85062
0.85705 0.91909 0.91208 0.90654 0.90345 0.94985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.33 8.89 71.98 0.64 -3.69 16
2 C -0.07 -2.97 2.26 -10.80 -0.02 -3.00 16
3 H 0.05 2.28 6.28 -2.39 -0.01 2.27 16
4 C 0.03 1.88 4.45 29.85 0.13 2.01 16
5 C -0.53 -30.47 8.41 25.60 0.22 -30.25 16
6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16
7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16
8 N -0.94 -57.96 13.29 21.44 0.28 -57.68 16
9 Si 0.96 44.98 29.54 68.60 2.03 47.01 16
10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
13 C 0.07 2.72 4.35 86.30 0.38 3.09 16
14 N -0.54 -16.39 4.16 -895.71 -3.73 -20.12 16
15 C 0.06 1.58 5.42 86.31 0.47 2.05 16
16 C 0.06 1.47 5.06 86.31 0.44 1.90 16
17 N -0.53 -10.79 4.73 -875.00 -4.14 -14.93 16
18 C 0.09 1.47 5.17 85.56 0.44 1.91 16
19 C -0.13 -2.21 4.01 -19.87 -0.08 -2.28 16
20 C -0.12 -2.00 7.84 22.27 0.17 -1.83 16
21 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16
22 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16
23 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16
24 C -0.12 -2.18 8.05 22.27 0.18 -2.00 16
25 C 0.09 1.84 1.94 44.92 0.09 1.93 16
26 H 0.04 1.07 6.29 -2.39 -0.02 1.05 16
27 C -0.14 -2.23 8.38 71.98 0.60 -1.63 16
28 C 0.06 1.55 4.89 86.31 0.42 1.98 16
29 H 0.04 1.61 6.95 -2.39 -0.02 1.60 16
30 H 0.06 2.16 7.75 -2.39 -0.02 2.14 16
31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16
33 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16
34 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16
35 H 0.07 2.43 8.03 -2.39 -0.02 2.41 16
36 H 0.02 0.66 8.12 -2.39 -0.02 0.65 16
37 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16
38 H 0.07 2.27 6.25 -2.39 -0.01 2.25 16
39 H 0.09 1.78 8.11 -2.39 -0.02 1.76 16
40 H 0.04 1.00 6.38 -2.39 -0.02 0.98 16
41 H 0.09 1.30 8.04 -2.38 -0.02 1.28 16
42 H 0.10 1.33 6.32 -2.39 -0.02 1.32 16
43 H 0.14 1.83 5.41 -2.91 -0.02 1.82 16
44 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16
45 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16
46 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16
47 H 0.12 2.01 8.03 -2.91 -0.02 1.99 16
48 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
49 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16
50 H 0.07 0.94 4.07 -2.39 -0.01 0.93 16
51 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16
52 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16
Total: -1.00 -65.78 388.40 0.51 -65.26
By element:
Atomic # 1 Polarization: 15.05 SS G_CDS: 0.87 Total: 15.92 kcal
Atomic # 6 Polarization: -40.66 SS G_CDS: 5.21 Total: -35.46 kcal
Atomic # 7 Polarization: -85.15 SS G_CDS: -7.59 Total: -92.73 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -65.78 0.51 -65.26 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602688342.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.249 kcal
(2) G-P(sol) polarization free energy of solvation -65.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.984 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds