Wall clock time and date at job start Tue Mar 31 2020 11:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46541 * 2 1 4 4 C 1.52995 * 109.47278 * 119.99950 * 2 1 3 5 5 C 1.50702 * 109.47157 * 295.00501 * 4 2 1 6 6 H 1.08006 * 120.00210 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00123 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00098 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46917 * 59.99212 * 9 7 5 11 11 H 1.48500 * 109.47156 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46789 * 299.99292 * 9 7 5 13 13 C 1.52995 * 109.47246 * 240.00184 * 2 1 3 14 14 N 1.46903 * 109.47274 * 64.99806 * 13 2 1 15 15 C 1.46963 * 110.99595 * 66.17850 * 14 13 2 16 16 C 1.53056 * 109.35944 * 183.16796 * 15 14 13 17 17 N 1.46956 * 109.38342 * 301.62902 * 16 15 14 18 18 C 1.46899 * 111.00293 * 183.17592 * 17 16 15 19 19 C 1.50699 * 109.47352 * 293.95822 * 18 17 16 20 20 C 1.38232 * 120.00024 * 269.72344 * 19 18 17 21 21 C 1.38236 * 120.00186 * 179.80922 * 20 19 18 22 22 C 1.38235 * 119.99663 * 0.39606 * 21 20 19 23 23 C 1.38232 * 120.00319 * 359.85732 * 22 21 20 24 24 C 1.38236 * 120.00036 * 89.99589 * 19 18 17 25 25 C 1.46962 * 110.87987 * 59.31148 * 17 16 15 26 26 H 1.09001 * 109.48625 * 60.64585 * 25 17 16 27 27 C 1.52999 * 109.48863 * 180.68966 * 25 17 16 28 28 C 1.46956 * 111.00102 * 189.99834 * 14 13 2 29 29 H 1.08997 * 109.47319 * 299.99809 * 1 2 3 30 30 H 1.09000 * 109.46974 * 60.00549 * 1 2 3 31 31 H 1.09003 * 109.46588 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47070 * 55.00006 * 4 2 1 33 33 H 1.09000 * 109.47286 * 175.00208 * 4 2 1 34 34 H 0.97010 * 120.00077 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47391 * 304.99822 * 13 2 1 36 36 H 1.08997 * 109.47145 * 184.99751 * 13 2 1 37 37 H 1.08992 * 109.47287 * 63.21185 * 15 14 13 38 38 H 1.08994 * 109.50466 * 303.13858 * 15 14 13 39 39 H 1.09002 * 109.48813 * 181.65179 * 16 15 14 40 40 H 1.09002 * 109.48870 * 61.61068 * 16 15 14 41 41 H 1.09005 * 109.46301 * 53.95555 * 18 17 16 42 42 H 1.08995 * 109.47177 * 173.95062 * 18 17 16 43 43 H 1.08004 * 120.00095 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.00202 * 180.23035 * 21 20 19 45 45 H 1.08001 * 119.99899 * 179.83482 * 22 21 20 46 46 H 1.07999 * 120.00458 * 179.97438 * 23 22 21 47 47 H 1.08004 * 119.99775 * 359.97438 * 24 19 18 48 48 H 1.09002 * 109.47294 * 60.00441 * 27 25 17 49 49 H 1.09004 * 109.47142 * 179.97438 * 27 25 17 50 50 H 1.09001 * 109.47096 * 299.99916 * 27 25 17 51 51 H 1.09002 * 109.48806 * 56.84348 * 28 14 13 52 52 H 1.09003 * 109.49203 * 296.77991 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6764 -1.5186 3.8511 9 14 1.4995 0.5634 5.2496 10 1 0.0196 0.6700 5.3095 11 1 1.9944 -0.1367 6.4621 12 1 2.0917 1.9237 5.1866 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0375 -2.4456 15 6 2.3368 1.3367 -2.4910 16 6 1.8466 2.1268 -3.7067 17 7 2.1079 1.3534 -4.9287 18 6 1.7192 2.1120 -6.1251 19 6 0.2244 2.3037 -6.1348 20 6 -0.5880 1.3710 -6.7519 21 6 -1.9594 1.5447 -6.7574 22 6 -2.5177 2.6555 -6.1529 23 6 -1.7049 3.5909 -5.5404 24 6 -0.3338 3.4152 -5.5316 25 6 1.4221 0.0544 -4.8830 26 1 0.3467 0.2135 -4.8035 27 6 1.7290 -0.7300 -6.1603 28 6 1.9126 -0.7359 -3.6676 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2056 34 1 2.9237 -1.8416 4.7318 35 1 1.6055 -1.7198 -1.2952 36 1 3.1263 -0.7994 -1.2056 37 1 3.4121 1.1776 -2.5701 38 1 2.1174 1.8958 -1.5814 39 1 2.3750 3.0787 -3.7590 40 1 0.7761 2.3098 -3.6140 41 1 2.2102 3.0851 -6.1136 42 1 2.0210 1.5632 -7.0172 43 1 -0.1516 0.5050 -7.2274 44 1 -2.5944 0.8141 -7.2362 45 1 -3.5889 2.7927 -6.1595 46 1 -2.1410 4.4590 -5.0685 47 1 0.3013 4.1459 -5.0529 48 1 2.8044 -0.8897 -6.2391 49 1 1.2207 -1.6936 -6.1259 50 1 1.3810 -0.1658 -7.0256 51 1 1.3842 -1.6879 -3.6154 52 1 2.9832 -0.9186 -3.7605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602688342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:22 Heat of formation + Delta-G solvation = 7.983873 kcal Electronic energy + Delta-G solvation = -27334.189763 eV Core-core repulsion = 23911.168006 eV Total energy + Delta-G solvation = -3423.021757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27499 -39.66230 -37.83929 -35.77511 -34.08923 -33.54668 -32.14717 -31.66451 -29.44846 -28.77203 -27.73361 -26.55196 -25.12800 -24.24166 -23.30305 -23.02427 -22.06426 -20.40983 -20.32971 -18.51096 -17.69085 -17.11064 -16.73925 -16.56583 -16.19712 -16.10094 -15.92016 -15.65341 -15.59716 -15.04892 -14.71610 -14.45508 -14.28927 -14.12175 -13.61880 -13.47390 -13.35085 -13.23235 -13.14682 -12.92243 -12.82556 -12.76491 -12.67727 -12.43344 -12.23819 -12.14842 -12.07099 -11.92191 -11.86799 -11.74168 -11.44577 -11.33832 -11.06017 -10.82193 -10.52639 -9.76384 -9.65081 -9.33710 -9.17841 -8.17217 -6.26551 0.45144 0.53034 1.39801 1.42749 1.50379 2.41943 2.81020 2.94313 3.08236 3.16048 3.81656 3.89352 3.94015 3.99289 4.10896 4.16598 4.24110 4.28300 4.28797 4.39364 4.42328 4.48031 4.51388 4.58270 4.64368 4.72927 4.74558 4.81038 4.83472 4.86385 4.89248 4.90582 4.99692 5.04003 5.07070 5.13546 5.17462 5.22479 5.26397 5.39600 5.45448 5.47978 5.54707 5.59227 5.65557 5.67370 5.79497 5.88385 6.00004 6.06789 6.15014 6.20645 6.24555 6.32387 6.88948 7.41640 8.94749 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002855 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.844180 B = 9803.949590 C =10516.463052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 H 0.053 0.947 4 C 0.035 3.965 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.075 3.925 14 N -0.537 5.537 15 C 0.055 3.945 16 C 0.064 3.936 17 N -0.527 5.527 18 C 0.092 3.908 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.133 4.133 24 C -0.120 4.120 25 C 0.088 3.912 26 H 0.044 0.956 27 C -0.145 4.145 28 C 0.060 3.940 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.035 0.965 32 H -0.010 1.010 33 H -0.016 1.016 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.125 0.875 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 7.863 -26.291 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.053 4.053 14 N -0.261 5.261 15 C -0.073 4.073 16 C -0.064 4.064 17 N -0.250 5.250 18 C -0.035 4.035 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.021 4.021 26 H 0.062 0.938 27 C -0.202 4.202 28 C -0.068 4.068 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.149 0.851 47 H 0.143 0.857 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.093 0.907 51 H 0.097 0.903 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.006 7.736 -26.161 27.934 hybrid contribution -0.007 0.082 1.424 1.426 sum -6.013 7.818 -24.737 26.631 Atomic orbital electron populations 1.21431 0.94770 1.00267 1.00138 1.21009 0.96553 0.98414 0.92909 0.92858 1.18987 0.93943 0.94662 0.92676 1.21597 1.34508 1.08584 0.92072 0.92171 1.25947 0.95219 0.96094 1.02621 1.70097 1.40240 1.22953 1.24341 0.85570 0.78954 0.78798 0.78164 1.19214 1.20975 1.19219 1.22007 0.96691 0.96975 0.89653 1.62147 1.57969 1.04134 1.01866 1.22187 0.95778 0.90814 0.98537 1.22124 0.99536 0.96377 0.88395 1.62617 1.56600 1.03572 1.02206 1.21338 0.88768 0.99540 0.93887 1.20736 0.97920 0.95297 0.98799 1.21444 0.93888 0.99183 0.99355 1.21440 0.95447 0.98194 0.99851 1.21439 1.00696 0.94709 0.98094 1.21407 0.93957 1.00030 0.99727 1.21266 0.95526 0.97767 0.99348 1.21620 0.96296 0.89267 0.94917 0.93790 1.21960 1.02600 0.99956 0.95729 1.22251 0.98947 0.96680 0.88908 0.94348 0.92142 0.94561 0.99194 0.99769 0.92924 0.91506 0.96448 0.95222 0.90876 0.89168 0.94211 0.89214 0.88386 0.84656 0.84605 0.84787 0.85062 0.85705 0.91909 0.91208 0.90654 0.90345 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.89 71.98 0.64 -3.69 16 2 C -0.07 -2.97 2.26 -10.80 -0.02 -3.00 16 3 H 0.05 2.28 6.28 -2.39 -0.01 2.27 16 4 C 0.03 1.88 4.45 29.85 0.13 2.01 16 5 C -0.53 -30.47 8.41 25.60 0.22 -30.25 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -57.96 13.29 21.44 0.28 -57.68 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.07 2.72 4.35 86.30 0.38 3.09 16 14 N -0.54 -16.39 4.16 -895.71 -3.73 -20.12 16 15 C 0.06 1.58 5.42 86.31 0.47 2.05 16 16 C 0.06 1.47 5.06 86.31 0.44 1.90 16 17 N -0.53 -10.79 4.73 -875.00 -4.14 -14.93 16 18 C 0.09 1.47 5.17 85.56 0.44 1.91 16 19 C -0.13 -2.21 4.01 -19.87 -0.08 -2.28 16 20 C -0.12 -2.00 7.84 22.27 0.17 -1.83 16 21 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 22 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 23 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 24 C -0.12 -2.18 8.05 22.27 0.18 -2.00 16 25 C 0.09 1.84 1.94 44.92 0.09 1.93 16 26 H 0.04 1.07 6.29 -2.39 -0.02 1.05 16 27 C -0.14 -2.23 8.38 71.98 0.60 -1.63 16 28 C 0.06 1.55 4.89 86.31 0.42 1.98 16 29 H 0.04 1.61 6.95 -2.39 -0.02 1.60 16 30 H 0.06 2.16 7.75 -2.39 -0.02 2.14 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 34 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.07 2.43 8.03 -2.39 -0.02 2.41 16 36 H 0.02 0.66 8.12 -2.39 -0.02 0.65 16 37 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 2.27 6.25 -2.39 -0.01 2.25 16 39 H 0.09 1.78 8.11 -2.39 -0.02 1.76 16 40 H 0.04 1.00 6.38 -2.39 -0.02 0.98 16 41 H 0.09 1.30 8.04 -2.38 -0.02 1.28 16 42 H 0.10 1.33 6.32 -2.39 -0.02 1.32 16 43 H 0.14 1.83 5.41 -2.91 -0.02 1.82 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 47 H 0.12 2.01 8.03 -2.91 -0.02 1.99 16 48 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 50 H 0.07 0.94 4.07 -2.39 -0.01 0.93 16 51 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 52 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -65.78 388.40 0.51 -65.26 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.87 Total: 15.92 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 5.21 Total: -35.46 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -7.59 Total: -92.73 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.78 0.51 -65.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.249 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds