Wall clock time and date at job start Tue Mar 31 2020 11:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47524 * 2 1 4 4 C 1.53002 * 109.47214 * 239.99768 * 2 1 3 5 5 C 1.50700 * 109.46781 * 66.07258 * 4 2 1 6 6 H 1.07997 * 120.00374 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99909 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99738 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00012 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46974 * 60.00189 * 9 7 5 11 11 H 1.48501 * 109.46942 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47164 * 299.99899 * 9 7 5 13 13 C 1.52997 * 109.46970 * 119.99946 * 2 1 3 14 14 N 1.46906 * 109.47537 * 271.74153 * 13 2 1 15 15 C 1.46954 * 110.99784 * 78.23871 * 14 13 2 16 16 C 1.53054 * 109.36050 * 183.19114 * 15 14 13 17 17 N 1.46958 * 109.38446 * 301.59152 * 16 15 14 18 18 C 1.46900 * 110.99940 * 183.20387 * 17 16 15 19 19 C 1.46995 * 110.85573 * 59.30832 * 17 16 15 20 20 C 1.46959 * 111.00237 * 202.04571 * 14 13 2 21 21 H 1.08995 * 109.48399 * 296.79876 * 20 14 13 22 22 C 1.52997 * 109.49040 * 56.84122 * 20 14 13 23 23 C 1.50695 * 109.47261 * 181.58423 * 22 20 14 24 24 C 1.38238 * 120.00030 * 272.01900 * 23 22 20 25 25 C 1.38233 * 119.99764 * 179.74478 * 24 23 22 26 26 C 1.38230 * 120.00397 * 0.54668 * 25 24 23 27 27 C 1.38239 * 119.99836 * 359.70222 * 26 25 24 28 28 C 1.38233 * 119.99840 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47166 * 313.95663 * 1 2 3 30 30 H 1.09000 * 109.46864 * 73.95340 * 1 2 3 31 31 H 1.08997 * 109.47404 * 193.95906 * 1 2 3 32 32 H 1.09001 * 109.46996 * 186.06370 * 4 2 1 33 33 H 1.08991 * 109.47313 * 306.06813 * 4 2 1 34 34 H 0.96998 * 119.99743 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47350 * 151.74235 * 13 2 1 36 36 H 1.09001 * 109.47456 * 31.74346 * 13 2 1 37 37 H 1.08998 * 109.48596 * 63.22881 * 15 14 13 38 38 H 1.08992 * 109.49172 * 303.16295 * 15 14 13 39 39 H 1.08995 * 109.48693 * 61.57283 * 16 15 14 40 40 H 1.09006 * 109.48728 * 181.61493 * 16 15 14 41 41 H 1.08995 * 109.47484 * 56.04232 * 18 17 16 42 42 H 1.09005 * 109.47094 * 176.04892 * 18 17 16 43 43 H 1.09002 * 109.46948 * 296.04474 * 18 17 16 44 44 H 1.08999 * 109.48537 * 180.72128 * 19 17 16 45 45 H 1.09005 * 109.49883 * 60.67675 * 19 17 16 46 46 H 1.09003 * 109.47428 * 301.58405 * 22 20 14 47 47 H 1.09004 * 109.47154 * 61.58124 * 22 20 14 48 48 H 1.08002 * 120.00080 * 359.97438 * 24 23 22 49 49 H 1.08008 * 119.99753 * 180.26774 * 25 24 23 50 50 H 1.08001 * 120.00617 * 179.72847 * 26 25 24 51 51 H 1.07997 * 120.00347 * 179.97438 * 27 26 25 52 52 H 1.08001 * 120.00004 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6641 0.0706 -2.4751 6 1 1.1159 0.9955 -2.3734 7 6 2.0191 -0.3863 -3.7266 8 7 2.6863 -1.5129 -3.8504 9 14 1.5526 0.5949 -5.2461 10 1 2.1649 1.9457 -5.1703 11 1 2.0477 -0.1052 -6.4586 12 1 0.0750 0.7243 -5.3173 13 6 2.0399 -0.7212 1.2492 14 7 2.1635 0.2398 2.3535 15 6 0.8514 0.5297 2.9485 16 6 1.0123 1.5915 4.0390 17 7 1.9534 1.1057 5.0579 18 6 2.0764 2.0669 6.1619 19 6 3.2656 0.8155 4.4623 20 6 3.1048 -0.2464 3.3719 21 1 2.7202 -1.1658 3.8131 22 6 4.4626 -0.5208 2.7225 23 6 5.4163 -1.0561 3.7592 24 6 6.1715 -0.1831 4.5200 25 6 7.0424 -0.6740 5.4746 26 6 7.1666 -2.0381 5.6608 27 6 6.4153 -2.9112 4.8966 28 6 5.5402 -2.4202 3.9458 29 1 -0.3633 0.7133 0.7398 30 1 -0.3633 0.2841 -0.9876 31 1 -0.3634 -0.9973 0.2479 32 1 3.1246 -0.8163 -1.1966 33 1 1.5907 -1.7127 -1.3052 34 1 2.9357 -1.8345 -4.7309 35 1 3.0144 -1.1630 1.0414 36 1 1.3371 -1.5064 1.5279 37 1 0.4411 -0.3808 3.3853 38 1 0.1761 0.8998 2.1773 39 1 1.3971 2.5108 3.5974 40 1 0.0449 1.7874 4.5015 41 1 1.0905 2.2657 6.5822 42 1 2.7238 1.6519 6.9345 43 1 2.5062 2.9963 5.7883 44 1 3.9410 0.4453 5.2336 45 1 3.6763 1.7259 4.0256 46 1 4.3426 -1.2550 1.9258 47 1 4.8602 0.4049 2.3065 48 1 6.0782 0.8825 4.3710 49 1 7.6292 0.0082 6.0719 50 1 7.8503 -2.4217 6.4036 51 1 6.5125 -3.9770 5.0417 52 1 4.9535 -3.1024 3.3484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602711292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:18 Heat of formation + Delta-G solvation = 26.347946 kcal Electronic energy + Delta-G solvation = -27264.607873 eV Core-core repulsion = 23842.382442 eV Total energy + Delta-G solvation = -3422.225431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.05139 -38.83923 -36.40838 -34.56749 -33.31360 -31.86272 -30.98848 -30.28117 -28.58983 -26.90752 -26.63891 -25.41659 -23.36929 -22.88260 -22.56079 -21.97018 -20.76807 -19.52814 -18.94613 -16.88134 -16.44714 -15.92417 -15.69296 -15.51791 -14.92954 -14.75449 -14.54230 -14.51222 -14.15700 -14.14294 -13.46391 -13.25511 -13.24185 -12.81009 -12.58888 -12.39389 -12.31891 -12.24755 -12.07327 -11.69790 -11.50740 -11.36545 -11.23788 -11.12467 -10.97136 -10.86641 -10.80316 -10.64938 -10.43010 -10.08433 -9.95972 -9.64261 -9.05604 -8.97956 -8.96586 -8.70406 -8.42060 -8.29558 -7.97945 -5.94796 -3.95581 1.29282 1.33418 3.36041 3.40475 3.42922 3.68595 3.88101 4.10109 4.50564 4.74622 4.81579 4.90053 4.94334 4.97724 5.06963 5.11738 5.26676 5.32512 5.37639 5.39513 5.40966 5.47067 5.50323 5.52210 5.68195 5.70039 5.72398 5.78108 5.83485 5.89067 5.94696 5.99703 6.03854 6.07016 6.18126 6.29103 6.35348 6.40241 6.43784 6.52021 6.63242 6.64532 6.90037 6.94108 6.96468 7.04302 7.17103 7.25828 7.40832 7.48889 7.73739 7.92371 8.05957 8.50025 9.10573 9.67480 11.16627 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.003425 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.197114 B = 8172.111442 C = 9864.942108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.053 3.947 14 N -0.532 5.532 15 C 0.050 3.950 16 C 0.056 3.944 17 N -0.546 5.546 18 C 0.027 3.973 19 C 0.063 3.937 20 C 0.096 3.904 21 H 0.046 0.954 22 C -0.083 4.083 23 C -0.070 4.070 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.118 4.118 28 C -0.115 4.115 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.119 0.881 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 2.373 21.980 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.074 4.074 14 N -0.256 5.256 15 C -0.078 4.078 16 C -0.072 4.072 17 N -0.271 5.271 18 C -0.122 4.122 19 C -0.065 4.065 20 C -0.013 4.013 21 H 0.064 0.936 22 C -0.121 4.121 23 C -0.070 4.070 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.135 0.865 51 H 0.137 0.863 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.047 2.259 21.851 22.337 hybrid contribution -0.184 0.432 -0.872 0.990 sum 3.863 2.691 20.979 21.501 Atomic orbital electron populations 1.22007 0.96872 0.99373 1.01443 1.21216 0.94517 1.00287 0.93879 0.91357 1.19125 0.95956 0.95321 0.90356 1.21207 1.35309 1.07443 0.91100 0.92685 1.25007 0.95381 0.95069 0.99016 1.69953 1.39479 1.20810 1.23423 0.86715 0.78782 0.80247 0.82585 1.20308 1.21408 1.20346 1.22582 1.01026 0.92769 0.91037 1.62280 1.08978 1.45187 1.09190 1.22433 0.91611 0.97656 0.96134 1.22217 0.96117 0.96976 0.91933 1.62159 1.10353 1.44043 1.10534 1.22319 1.01880 0.93777 0.94198 1.22291 0.90126 0.97959 0.96125 1.21502 0.92272 0.96214 0.91335 0.93646 1.20814 0.92630 1.02615 0.96039 1.19914 0.96808 0.93455 0.96864 1.21081 0.96613 0.99549 0.96230 1.21108 0.98847 0.95479 0.98472 1.21100 1.00030 0.93587 1.00023 1.21135 0.96657 0.99618 0.96243 1.21128 0.98753 0.94998 0.98427 0.94538 0.91552 0.94326 0.96723 0.96872 0.93086 0.90521 0.95272 0.94576 0.88723 0.93991 0.90733 0.91555 0.91620 0.95729 0.90307 0.94122 0.89567 0.89846 0.86184 0.86364 0.86458 0.86258 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.68 37.15 0.32 -2.29 16 2 C -0.08 -1.62 2.35 -90.62 -0.21 -1.83 16 3 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 4 C 0.03 0.76 4.35 -27.88 -0.12 0.64 16 5 C -0.51 -14.28 8.21 -34.44 -0.28 -14.56 16 6 H 0.05 1.50 7.24 -52.49 -0.38 1.12 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.05 0.91 4.67 -3.82 -0.02 0.89 16 14 N -0.53 -8.05 4.39 -226.50 -0.99 -9.04 16 15 C 0.05 0.69 5.28 -3.77 -0.02 0.67 16 16 C 0.06 0.68 5.62 -3.76 -0.02 0.66 16 17 N -0.55 -6.59 4.97 -242.72 -1.21 -7.79 16 18 C 0.03 0.25 9.61 60.06 0.58 0.83 16 19 C 0.06 0.77 4.20 -3.75 -0.02 0.75 16 20 C 0.10 1.29 2.06 -67.66 -0.14 1.15 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 C -0.08 -1.09 4.70 -27.89 -0.13 -1.22 16 23 C -0.07 -0.83 4.69 -104.63 -0.49 -1.32 16 24 C -0.12 -1.25 7.83 -39.58 -0.31 -1.56 16 25 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 26 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.12 -1.33 9.69 -39.58 -0.38 -1.71 16 29 H 0.04 0.58 5.42 -51.93 -0.28 0.30 16 30 H 0.07 1.37 6.76 -51.93 -0.35 1.02 16 31 H 0.04 0.69 7.76 -51.93 -0.40 0.29 16 32 H 0.01 0.39 7.98 -51.93 -0.41 -0.02 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.35 4.91 -51.93 -0.26 1.10 16 36 H 0.03 0.50 7.43 -51.93 -0.39 0.11 16 37 H 0.04 0.52 8.13 -51.93 -0.42 0.10 16 38 H 0.09 1.34 4.73 -51.93 -0.25 1.10 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.08 0.92 6.22 -51.93 -0.32 0.60 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 1.22 5.79 -51.93 -0.30 0.92 16 47 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 48 H 0.12 1.16 7.91 -52.49 -0.42 0.75 16 49 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 52 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -30.01 393.11 -12.32 -42.33 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -9.22 Total: 0.29 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.54 Total: -22.23 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -1.46 Total: -43.02 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.01 -12.32 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602711292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.676 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds