Wall clock time and date at job start Tue Mar 31 2020 11:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47524 * 2 1 4 4 C 1.53002 * 109.47214 * 239.99768 * 2 1 3 5 5 C 1.50700 * 109.46781 * 66.07258 * 4 2 1 6 6 H 1.07997 * 120.00374 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99909 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99738 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00012 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46974 * 60.00189 * 9 7 5 11 11 H 1.48501 * 109.46942 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47164 * 299.99899 * 9 7 5 13 13 C 1.52997 * 109.46970 * 119.99946 * 2 1 3 14 14 N 1.46906 * 109.47537 * 271.74153 * 13 2 1 15 15 C 1.46954 * 110.99784 * 78.23871 * 14 13 2 16 16 C 1.53054 * 109.36050 * 183.19114 * 15 14 13 17 17 N 1.46958 * 109.38446 * 301.59152 * 16 15 14 18 18 C 1.46900 * 110.99940 * 183.20387 * 17 16 15 19 19 C 1.46995 * 110.85573 * 59.30832 * 17 16 15 20 20 C 1.46959 * 111.00237 * 202.04571 * 14 13 2 21 21 H 1.08995 * 109.48399 * 296.79876 * 20 14 13 22 22 C 1.52997 * 109.49040 * 56.84122 * 20 14 13 23 23 C 1.50695 * 109.47261 * 181.58423 * 22 20 14 24 24 C 1.38238 * 120.00030 * 272.01900 * 23 22 20 25 25 C 1.38233 * 119.99764 * 179.74478 * 24 23 22 26 26 C 1.38230 * 120.00397 * 0.54668 * 25 24 23 27 27 C 1.38239 * 119.99836 * 359.70222 * 26 25 24 28 28 C 1.38233 * 119.99840 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47166 * 313.95663 * 1 2 3 30 30 H 1.09000 * 109.46864 * 73.95340 * 1 2 3 31 31 H 1.08997 * 109.47404 * 193.95906 * 1 2 3 32 32 H 1.09001 * 109.46996 * 186.06370 * 4 2 1 33 33 H 1.08991 * 109.47313 * 306.06813 * 4 2 1 34 34 H 0.96998 * 119.99743 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47350 * 151.74235 * 13 2 1 36 36 H 1.09001 * 109.47456 * 31.74346 * 13 2 1 37 37 H 1.08998 * 109.48596 * 63.22881 * 15 14 13 38 38 H 1.08992 * 109.49172 * 303.16295 * 15 14 13 39 39 H 1.08995 * 109.48693 * 61.57283 * 16 15 14 40 40 H 1.09006 * 109.48728 * 181.61493 * 16 15 14 41 41 H 1.08995 * 109.47484 * 56.04232 * 18 17 16 42 42 H 1.09005 * 109.47094 * 176.04892 * 18 17 16 43 43 H 1.09002 * 109.46948 * 296.04474 * 18 17 16 44 44 H 1.08999 * 109.48537 * 180.72128 * 19 17 16 45 45 H 1.09005 * 109.49883 * 60.67675 * 19 17 16 46 46 H 1.09003 * 109.47428 * 301.58405 * 22 20 14 47 47 H 1.09004 * 109.47154 * 61.58124 * 22 20 14 48 48 H 1.08002 * 120.00080 * 359.97438 * 24 23 22 49 49 H 1.08008 * 119.99753 * 180.26774 * 25 24 23 50 50 H 1.08001 * 120.00617 * 179.72847 * 26 25 24 51 51 H 1.07997 * 120.00347 * 179.97438 * 27 26 25 52 52 H 1.08001 * 120.00004 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6641 0.0706 -2.4751 6 1 1.1159 0.9955 -2.3734 7 6 2.0191 -0.3863 -3.7266 8 7 2.6863 -1.5129 -3.8504 9 14 1.5526 0.5949 -5.2461 10 1 2.1649 1.9457 -5.1703 11 1 2.0477 -0.1052 -6.4586 12 1 0.0750 0.7243 -5.3173 13 6 2.0399 -0.7212 1.2492 14 7 2.1635 0.2398 2.3535 15 6 0.8514 0.5297 2.9485 16 6 1.0123 1.5915 4.0390 17 7 1.9534 1.1057 5.0579 18 6 2.0764 2.0669 6.1619 19 6 3.2656 0.8155 4.4623 20 6 3.1048 -0.2464 3.3719 21 1 2.7202 -1.1658 3.8131 22 6 4.4626 -0.5208 2.7225 23 6 5.4163 -1.0561 3.7592 24 6 6.1715 -0.1831 4.5200 25 6 7.0424 -0.6740 5.4746 26 6 7.1666 -2.0381 5.6608 27 6 6.4153 -2.9112 4.8966 28 6 5.5402 -2.4202 3.9458 29 1 -0.3633 0.7133 0.7398 30 1 -0.3633 0.2841 -0.9876 31 1 -0.3634 -0.9973 0.2479 32 1 3.1246 -0.8163 -1.1966 33 1 1.5907 -1.7127 -1.3052 34 1 2.9357 -1.8345 -4.7309 35 1 3.0144 -1.1630 1.0414 36 1 1.3371 -1.5064 1.5279 37 1 0.4411 -0.3808 3.3853 38 1 0.1761 0.8998 2.1773 39 1 1.3971 2.5108 3.5974 40 1 0.0449 1.7874 4.5015 41 1 1.0905 2.2657 6.5822 42 1 2.7238 1.6519 6.9345 43 1 2.5062 2.9963 5.7883 44 1 3.9410 0.4453 5.2336 45 1 3.6763 1.7259 4.0256 46 1 4.3426 -1.2550 1.9258 47 1 4.8602 0.4049 2.3065 48 1 6.0782 0.8825 4.3710 49 1 7.6292 0.0082 6.0719 50 1 7.8503 -2.4217 6.4036 51 1 6.5125 -3.9770 5.0417 52 1 4.9535 -3.1024 3.3484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602711292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:17 Heat of formation + Delta-G solvation = 9.737909 kcal Electronic energy + Delta-G solvation = -27265.328138 eV Core-core repulsion = 23842.382442 eV Total energy + Delta-G solvation = -3422.945696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08324 -39.75773 -37.75891 -35.91198 -34.73994 -33.63350 -31.78680 -31.23012 -29.82056 -28.74430 -27.62789 -26.74227 -24.86249 -24.13509 -23.40176 -23.15385 -21.71149 -20.77936 -20.49521 -18.47311 -17.71243 -17.21652 -16.77434 -16.48059 -16.43252 -15.81656 -15.71641 -15.60607 -15.37749 -15.29453 -14.61859 -14.37156 -14.30013 -14.23331 -13.84965 -13.73695 -13.56304 -13.45267 -13.16541 -13.11246 -12.84565 -12.75263 -12.51601 -12.44931 -12.32877 -12.12440 -11.98676 -11.88020 -11.82276 -11.64637 -11.53975 -11.29794 -11.01610 -10.75492 -10.50667 -9.78196 -9.55511 -9.38243 -9.20948 -8.15324 -6.24109 0.46867 0.52727 1.40509 1.43203 1.50750 2.43071 2.80098 2.91513 3.03588 3.17934 3.73612 3.87331 3.97418 4.06099 4.08216 4.17485 4.20073 4.23439 4.32399 4.36174 4.37618 4.43391 4.47590 4.53220 4.62812 4.67063 4.68665 4.75215 4.77744 4.79887 4.87442 4.91617 4.96424 5.01194 5.02459 5.10431 5.11238 5.21045 5.24701 5.27233 5.45836 5.52402 5.59870 5.61804 5.65239 5.76253 5.79883 5.91690 5.99255 6.04329 6.15158 6.22189 6.24693 6.34166 6.91501 7.43699 8.96402 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.003425 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.197114 B = 8172.111442 C = 9864.942108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 H 0.057 0.943 4 C 0.037 3.963 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.065 3.935 14 N -0.537 5.537 15 C 0.049 3.951 16 C 0.061 3.939 17 N -0.557 5.557 18 C 0.027 3.973 19 C 0.073 3.927 20 C 0.101 3.899 21 H 0.034 0.966 22 C -0.076 4.076 23 C -0.085 4.085 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.134 4.134 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.042 0.958 32 H -0.014 1.014 33 H -0.012 1.012 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.128 0.872 49 H 0.144 0.856 50 H 0.144 0.856 51 H 0.137 0.863 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 3.754 23.910 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.062 4.062 14 N -0.262 5.262 15 C -0.079 4.079 16 C -0.067 4.067 17 N -0.282 5.282 18 C -0.121 4.121 19 C -0.055 4.055 20 C -0.007 4.007 21 H 0.052 0.948 22 C -0.114 4.114 23 C -0.085 4.085 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.143 4.143 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.146 0.854 49 H 0.162 0.838 50 H 0.162 0.838 51 H 0.155 0.845 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.921 3.655 23.804 24.400 hybrid contribution -0.099 -0.036 -1.410 1.414 sum 3.823 3.618 22.393 23.004 Atomic orbital electron populations 1.21914 0.95215 1.00583 1.01199 1.20985 0.95791 0.99013 0.92905 0.92419 1.18998 0.93992 0.94467 0.92597 1.21607 1.35090 1.07741 0.92162 0.92203 1.25924 0.95269 0.96117 1.02527 1.70096 1.40679 1.22545 1.24247 0.85597 0.78935 0.78801 0.78307 1.19370 1.21066 1.19192 1.22278 1.00303 0.92800 0.90868 1.62223 1.10228 1.44341 1.09410 1.22468 0.90653 0.98158 0.96616 1.22183 0.97236 0.95763 0.91558 1.62180 1.09946 1.45168 1.10917 1.22379 1.02988 0.93288 0.93401 1.22168 0.90653 0.97033 0.95660 1.21481 0.91754 0.96271 0.91209 0.94791 1.20670 0.93077 1.01559 0.96050 1.19839 0.97444 0.93933 0.97303 1.21218 0.96704 0.99811 0.96399 1.21439 0.98343 0.96143 0.98018 1.21466 0.99776 0.93527 0.99978 1.21397 0.96214 1.00876 0.95777 1.21234 0.99703 0.94953 0.99352 0.91428 0.93654 0.93841 0.99608 0.99395 0.93005 0.91577 0.95154 0.94879 0.88988 0.94570 0.88665 0.90237 0.90743 0.95452 0.89479 0.94629 0.91594 0.90730 0.85419 0.83839 0.83839 0.84528 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 8.68 71.98 0.62 -4.29 16 2 C -0.07 -2.83 2.35 -10.80 -0.03 -2.85 16 3 H 0.06 2.52 8.05 -2.38 -0.02 2.50 16 4 C 0.04 1.97 4.35 29.85 0.13 2.10 16 5 C -0.53 -30.14 8.21 25.60 0.21 -29.93 16 6 H 0.06 3.29 7.24 -2.91 -0.02 3.27 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 8 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 C 0.06 2.32 4.67 86.30 0.40 2.73 16 14 N -0.54 -16.41 4.39 -870.51 -3.82 -20.22 16 15 C 0.05 1.30 5.28 86.31 0.46 1.76 16 16 C 0.06 1.37 5.62 86.31 0.48 1.85 16 17 N -0.56 -12.40 4.97 -921.83 -4.58 -16.98 16 18 C 0.03 0.45 9.61 127.69 1.23 1.68 16 19 C 0.07 1.71 4.20 86.30 0.36 2.08 16 20 C 0.10 2.77 2.06 44.92 0.09 2.87 16 21 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 22 C -0.08 -2.08 4.70 29.85 0.14 -1.94 16 23 C -0.08 -2.04 4.69 -19.87 -0.09 -2.14 16 24 C -0.12 -2.53 7.83 22.27 0.17 -2.35 16 25 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 26 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 27 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 28 C -0.13 -3.16 9.69 22.27 0.22 -2.94 16 29 H 0.07 2.08 5.42 -2.39 -0.01 2.07 16 30 H 0.04 1.86 6.76 -2.39 -0.02 1.84 16 31 H 0.04 1.55 7.76 -2.39 -0.02 1.53 16 32 H -0.01 -0.84 7.98 -2.39 -0.02 -0.86 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.07 2.50 4.91 -2.39 -0.01 2.49 16 36 H 0.03 1.07 7.43 -2.39 -0.02 1.05 16 37 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 38 H 0.09 2.47 4.73 -2.39 -0.01 2.46 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 1.76 8.13 -2.38 -0.02 1.74 16 41 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 43 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.09 1.91 6.22 -2.39 -0.01 1.90 16 45 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.07 2.04 5.79 -2.39 -0.01 2.03 16 47 H 0.07 2.13 8.10 -2.38 -0.02 2.11 16 48 H 0.13 2.34 7.91 -2.91 -0.02 2.32 16 49 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 51 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 52 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -65.69 393.11 0.31 -65.38 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.86 Total: 19.32 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 5.53 Total: -37.03 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -8.11 Total: -94.59 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.69 0.31 -65.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602711292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.119 kcal (2) G-P(sol) polarization free energy of solvation -65.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds