Wall clock time and date at job start Tue Mar 31 2020 11:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46845 * 2 1 4 4 C 1.52995 * 109.47237 * 119.99819 * 2 1 3 5 5 C 1.50707 * 109.47314 * 292.08105 * 4 2 1 6 6 H 1.07998 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00029 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00045 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00022 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46632 * 120.00336 * 9 7 5 12 12 H 1.48493 * 109.47229 * 240.00395 * 9 7 5 13 13 C 1.53001 * 109.47216 * 240.00391 * 2 1 3 14 14 N 1.46894 * 109.47257 * 68.63261 * 13 2 1 15 15 C 1.46953 * 111.01933 * 273.36376 * 14 13 2 16 16 C 1.53052 * 109.38515 * 176.83452 * 15 14 13 17 17 N 1.46958 * 109.36094 * 58.39264 * 16 15 14 18 18 C 1.46900 * 110.99707 * 176.81507 * 17 16 15 19 19 C 1.46954 * 110.88030 * 300.67676 * 17 16 15 20 20 C 1.46962 * 110.99749 * 149.55818 * 14 13 2 21 21 H 1.08999 * 109.49288 * 63.19939 * 20 14 13 22 22 C 1.53004 * 109.48621 * 303.15268 * 20 14 13 23 23 C 1.50700 * 109.46875 * 181.76269 * 22 20 14 24 24 C 1.38230 * 119.99808 * 275.70724 * 23 22 20 25 25 C 1.38237 * 119.99944 * 179.76694 * 24 23 22 26 26 C 1.38235 * 120.00002 * 0.51177 * 25 24 23 27 27 C 1.38237 * 119.99723 * 359.74366 * 26 25 24 28 28 C 1.38229 * 120.00037 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46916 * 272.70719 * 1 2 3 30 30 H 1.08999 * 109.47259 * 32.70955 * 1 2 3 31 31 H 1.09000 * 109.46967 * 152.70409 * 1 2 3 32 32 H 1.08996 * 109.47192 * 52.08157 * 4 2 1 33 33 H 1.09003 * 109.47354 * 172.08066 * 4 2 1 34 34 H 0.97001 * 119.99749 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46572 * 308.63215 * 13 2 1 36 36 H 1.09003 * 109.47126 * 188.63758 * 13 2 1 37 37 H 1.09005 * 109.48870 * 56.85820 * 15 14 13 38 38 H 1.09003 * 109.49322 * 296.81563 * 15 14 13 39 39 H 1.08997 * 109.48546 * 298.42708 * 16 15 14 40 40 H 1.09001 * 109.49118 * 178.35679 * 16 15 14 41 41 H 1.09000 * 109.47327 * 183.80115 * 18 17 16 42 42 H 1.08997 * 109.47076 * 303.79844 * 18 17 16 43 43 H 1.08997 * 109.47485 * 63.79912 * 18 17 16 44 44 H 1.08996 * 109.49106 * 299.35686 * 19 17 16 45 45 H 1.08999 * 109.50384 * 179.29901 * 19 17 16 46 46 H 1.09006 * 109.46962 * 301.76155 * 22 20 14 47 47 H 1.09001 * 109.46947 * 61.76319 * 22 20 14 48 48 H 1.08001 * 120.00593 * 0.02562 * 24 23 22 49 49 H 1.08000 * 120.00132 * 180.23118 * 25 24 23 50 50 H 1.08002 * 120.00300 * 179.72145 * 26 25 24 51 51 H 1.07998 * 120.00062 * 179.97438 * 27 26 25 52 52 H 1.08007 * 120.00364 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.7039 0.0932 2.4719 6 1 1.1787 1.0312 2.3683 7 6 2.0660 -0.3596 3.7227 8 7 2.7052 -1.5021 3.8489 9 14 1.6501 0.6503 5.2383 10 1 0.9347 1.8855 4.8289 11 1 0.7825 -0.1474 6.1417 12 1 2.9018 1.0151 5.9489 13 6 2.0400 -0.7212 -1.2493 14 7 1.7275 0.0809 -2.4396 15 6 0.3786 -0.2201 -2.9388 16 6 0.0622 0.6899 -4.1280 17 7 1.0678 0.4844 -5.1798 18 6 0.7555 1.2862 -6.3704 19 6 2.4167 0.7860 -4.6808 20 6 2.7331 -0.1241 -3.4916 21 1 2.7142 -1.1648 -3.8150 22 6 4.1209 0.2153 -2.9441 23 6 5.1464 0.0466 -4.0355 24 6 5.6831 -1.2010 -4.2926 25 6 6.6202 -1.3567 -5.2969 26 6 7.0284 -0.2628 -6.0370 27 6 6.4955 0.9858 -5.7762 28 6 5.5549 1.1406 -4.7752 29 1 -0.3633 0.0485 1.0265 30 1 -0.3634 0.8647 -0.5553 31 1 -0.3633 -0.9132 -0.4713 32 1 1.5657 -1.6998 1.3229 33 1 3.1208 -0.8454 1.1813 34 1 2.9596 -1.8208 4.7290 35 1 1.5562 -1.6946 -1.3298 36 1 3.1191 -0.8568 -1.1755 37 1 -0.3494 -0.0485 -2.1458 38 1 0.3321 -1.2620 -3.2557 39 1 0.0815 1.7306 -3.8047 40 1 -0.9265 0.4481 -4.5180 41 1 1.4767 1.0646 -7.1571 42 1 -0.2483 1.0433 -6.7190 43 1 0.8064 2.3455 -6.1188 44 1 2.4627 1.8279 -4.3638 45 1 3.1448 0.6146 -5.4736 46 1 4.1306 1.2472 -2.5928 47 1 4.3582 -0.4527 -2.1161 48 1 5.3673 -2.0550 -3.7118 49 1 7.0368 -2.3321 -5.5003 50 1 7.7638 -0.3836 -6.8186 51 1 6.8147 1.8405 -6.3541 52 1 5.1389 2.1162 -4.5712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602711294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:20 Heat of formation + Delta-G solvation = 25.465911 kcal Electronic energy + Delta-G solvation = -27273.355600 eV Core-core repulsion = 23851.091922 eV Total energy + Delta-G solvation = -3422.263679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.06121 -38.85689 -36.41549 -34.56627 -33.31624 -31.84636 -30.97987 -30.31440 -28.59235 -26.89075 -26.63591 -25.47928 -23.31150 -22.92528 -22.58065 -21.96936 -20.80062 -19.51109 -18.90614 -16.89006 -16.38808 -15.95804 -15.68907 -15.51962 -14.95847 -14.75785 -14.55636 -14.49946 -14.18961 -14.01591 -13.50027 -13.42721 -13.18775 -12.85289 -12.58177 -12.39258 -12.24666 -12.24163 -12.06497 -11.63877 -11.55848 -11.35598 -11.28946 -11.15353 -10.94951 -10.88175 -10.83760 -10.61297 -10.36280 -10.14173 -9.99283 -9.61387 -9.05744 -8.99311 -8.96663 -8.71042 -8.42320 -8.30893 -7.97030 -5.95627 -3.96330 1.28083 1.32234 3.33351 3.41095 3.45217 3.68171 3.87590 4.08806 4.50295 4.73857 4.79991 4.88837 4.94718 4.97033 5.06239 5.11021 5.26113 5.32409 5.37277 5.38871 5.40369 5.45854 5.50083 5.52438 5.67181 5.69806 5.72177 5.78978 5.84360 5.91023 5.95733 6.00175 6.06296 6.07986 6.18637 6.25118 6.33356 6.38783 6.42618 6.52958 6.61702 6.63233 6.89497 6.93265 6.96180 7.04012 7.19344 7.24477 7.40492 7.50230 7.74196 7.90502 8.05453 8.49791 9.10643 9.67046 11.15853 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003374 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.913140 B = 8296.754711 C = 9940.625112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.053 3.947 14 N -0.532 5.532 15 C 0.047 3.953 16 C 0.056 3.944 17 N -0.547 5.547 18 C 0.027 3.973 19 C 0.065 3.935 20 C 0.096 3.904 21 H 0.046 0.954 22 C -0.083 4.083 23 C -0.069 4.069 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.258 0.742 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.024 0.976 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 3.440 -22.582 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.074 4.074 14 N -0.256 5.256 15 C -0.081 4.081 16 C -0.072 4.072 17 N -0.271 5.271 18 C -0.122 4.122 19 C -0.063 4.063 20 C -0.013 4.013 21 H 0.064 0.936 22 C -0.120 4.120 23 C -0.070 4.070 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.521 3.327 -22.460 22.844 hybrid contribution -0.130 0.437 0.859 0.972 sum 2.390 3.765 -21.601 22.056 Atomic orbital electron populations 1.21919 0.96895 0.98642 1.01845 1.21168 0.94818 0.99919 0.93585 0.91783 1.19142 0.95967 0.95433 0.90461 1.21273 1.36271 1.06125 0.91184 0.92558 1.25015 0.95415 0.95069 0.99047 1.69978 1.40287 1.20189 1.23216 0.86597 0.78060 0.80398 0.83329 1.19754 1.21156 1.21118 1.22539 1.00818 0.94231 0.89769 1.62202 1.01180 1.56894 1.05352 1.22490 0.91927 0.97195 0.96487 1.22209 0.94887 0.98807 0.91281 1.62156 1.02751 1.55759 1.06431 1.22316 1.01767 0.95041 0.93042 1.22229 0.89882 0.97806 0.96360 1.21531 0.90982 0.97825 0.90984 0.93648 1.20810 0.91344 1.04089 0.95787 1.19902 0.96947 0.93340 0.96811 1.21106 0.97114 0.97072 0.98028 1.21132 0.97712 0.98716 0.96072 1.21102 1.00490 0.93051 1.00113 1.21111 0.97389 0.97301 0.98080 1.21087 0.97814 0.98486 0.96070 0.91581 0.94411 0.94565 0.96813 0.96854 0.93200 0.94842 0.90969 0.88497 0.94612 0.94032 0.90736 0.91634 0.91558 0.95750 0.94174 0.90463 0.89874 0.89621 0.86067 0.86269 0.86460 0.86361 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.75 37.16 0.29 -2.25 16 2 C -0.08 -1.54 2.49 -90.62 -0.23 -1.76 16 3 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 4 C 0.03 0.70 4.41 -27.88 -0.12 0.57 16 5 C -0.51 -14.21 8.09 -34.44 -0.28 -14.49 16 6 H 0.06 1.54 7.56 -52.49 -0.40 1.14 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.05 0.91 4.45 -3.83 -0.02 0.90 16 14 N -0.53 -7.95 4.38 -226.48 -0.99 -8.94 16 15 C 0.05 0.65 5.14 -3.77 -0.02 0.63 16 16 C 0.06 0.68 5.62 -3.77 -0.02 0.66 16 17 N -0.55 -6.58 4.97 -242.76 -1.21 -7.78 16 18 C 0.03 0.26 9.60 60.06 0.58 0.83 16 19 C 0.07 0.80 4.32 -3.77 -0.02 0.78 16 20 C 0.10 1.27 2.10 -67.65 -0.14 1.13 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 C -0.08 -1.06 4.67 -27.88 -0.13 -1.19 16 23 C -0.07 -0.81 4.31 -104.63 -0.45 -1.26 16 24 C -0.12 -1.30 9.72 -39.58 -0.38 -1.69 16 25 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 28 C -0.12 -1.23 8.40 -39.59 -0.33 -1.57 16 29 H 0.07 1.38 6.89 -51.93 -0.36 1.02 16 30 H 0.04 0.63 7.19 -51.93 -0.37 0.26 16 31 H 0.04 0.62 6.85 -51.93 -0.36 0.26 16 32 H 0.01 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.01 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 36 H 0.07 1.24 5.21 -51.93 -0.27 0.97 16 37 H 0.10 1.37 4.37 -51.93 -0.23 1.14 16 38 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 43 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.91 6.55 -51.93 -0.34 0.57 16 46 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 47 H 0.09 1.18 5.93 -51.93 -0.31 0.88 16 48 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 50 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 52 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -29.98 394.39 -12.44 -42.42 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -9.33 Total: -0.18 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -2.57 Total: -21.97 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -1.46 Total: -42.89 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.98 -12.44 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602711294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.883 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds