Wall clock time and date at job start Tue Mar 31 2020 11:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46845 * 2 1 4 4 C 1.52995 * 109.47237 * 119.99819 * 2 1 3 5 5 C 1.50707 * 109.47314 * 292.08105 * 4 2 1 6 6 H 1.07998 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00029 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00045 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00022 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46632 * 120.00336 * 9 7 5 12 12 H 1.48493 * 109.47229 * 240.00395 * 9 7 5 13 13 C 1.53001 * 109.47216 * 240.00391 * 2 1 3 14 14 N 1.46894 * 109.47257 * 68.63261 * 13 2 1 15 15 C 1.46953 * 111.01933 * 273.36376 * 14 13 2 16 16 C 1.53052 * 109.38515 * 176.83452 * 15 14 13 17 17 N 1.46958 * 109.36094 * 58.39264 * 16 15 14 18 18 C 1.46900 * 110.99707 * 176.81507 * 17 16 15 19 19 C 1.46954 * 110.88030 * 300.67676 * 17 16 15 20 20 C 1.46962 * 110.99749 * 149.55818 * 14 13 2 21 21 H 1.08999 * 109.49288 * 63.19939 * 20 14 13 22 22 C 1.53004 * 109.48621 * 303.15268 * 20 14 13 23 23 C 1.50700 * 109.46875 * 181.76269 * 22 20 14 24 24 C 1.38230 * 119.99808 * 275.70724 * 23 22 20 25 25 C 1.38237 * 119.99944 * 179.76694 * 24 23 22 26 26 C 1.38235 * 120.00002 * 0.51177 * 25 24 23 27 27 C 1.38237 * 119.99723 * 359.74366 * 26 25 24 28 28 C 1.38229 * 120.00037 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46916 * 272.70719 * 1 2 3 30 30 H 1.08999 * 109.47259 * 32.70955 * 1 2 3 31 31 H 1.09000 * 109.46967 * 152.70409 * 1 2 3 32 32 H 1.08996 * 109.47192 * 52.08157 * 4 2 1 33 33 H 1.09003 * 109.47354 * 172.08066 * 4 2 1 34 34 H 0.97001 * 119.99749 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46572 * 308.63215 * 13 2 1 36 36 H 1.09003 * 109.47126 * 188.63758 * 13 2 1 37 37 H 1.09005 * 109.48870 * 56.85820 * 15 14 13 38 38 H 1.09003 * 109.49322 * 296.81563 * 15 14 13 39 39 H 1.08997 * 109.48546 * 298.42708 * 16 15 14 40 40 H 1.09001 * 109.49118 * 178.35679 * 16 15 14 41 41 H 1.09000 * 109.47327 * 183.80115 * 18 17 16 42 42 H 1.08997 * 109.47076 * 303.79844 * 18 17 16 43 43 H 1.08997 * 109.47485 * 63.79912 * 18 17 16 44 44 H 1.08996 * 109.49106 * 299.35686 * 19 17 16 45 45 H 1.08999 * 109.50384 * 179.29901 * 19 17 16 46 46 H 1.09006 * 109.46962 * 301.76155 * 22 20 14 47 47 H 1.09001 * 109.46947 * 61.76319 * 22 20 14 48 48 H 1.08001 * 120.00593 * 0.02562 * 24 23 22 49 49 H 1.08000 * 120.00132 * 180.23118 * 25 24 23 50 50 H 1.08002 * 120.00300 * 179.72145 * 26 25 24 51 51 H 1.07998 * 120.00062 * 179.97438 * 27 26 25 52 52 H 1.08007 * 120.00364 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.7039 0.0932 2.4719 6 1 1.1787 1.0312 2.3683 7 6 2.0660 -0.3596 3.7227 8 7 2.7052 -1.5021 3.8489 9 14 1.6501 0.6503 5.2383 10 1 0.9347 1.8855 4.8289 11 1 0.7825 -0.1474 6.1417 12 1 2.9018 1.0151 5.9489 13 6 2.0400 -0.7212 -1.2493 14 7 1.7275 0.0809 -2.4396 15 6 0.3786 -0.2201 -2.9388 16 6 0.0622 0.6899 -4.1280 17 7 1.0678 0.4844 -5.1798 18 6 0.7555 1.2862 -6.3704 19 6 2.4167 0.7860 -4.6808 20 6 2.7331 -0.1241 -3.4916 21 1 2.7142 -1.1648 -3.8150 22 6 4.1209 0.2153 -2.9441 23 6 5.1464 0.0466 -4.0355 24 6 5.6831 -1.2010 -4.2926 25 6 6.6202 -1.3567 -5.2969 26 6 7.0284 -0.2628 -6.0370 27 6 6.4955 0.9858 -5.7762 28 6 5.5549 1.1406 -4.7752 29 1 -0.3633 0.0485 1.0265 30 1 -0.3634 0.8647 -0.5553 31 1 -0.3633 -0.9132 -0.4713 32 1 1.5657 -1.6998 1.3229 33 1 3.1208 -0.8454 1.1813 34 1 2.9596 -1.8208 4.7290 35 1 1.5562 -1.6946 -1.3298 36 1 3.1191 -0.8568 -1.1755 37 1 -0.3494 -0.0485 -2.1458 38 1 0.3321 -1.2620 -3.2557 39 1 0.0815 1.7306 -3.8047 40 1 -0.9265 0.4481 -4.5180 41 1 1.4767 1.0646 -7.1571 42 1 -0.2483 1.0433 -6.7190 43 1 0.8064 2.3455 -6.1188 44 1 2.4627 1.8279 -4.3638 45 1 3.1448 0.6146 -5.4736 46 1 4.1306 1.2472 -2.5928 47 1 4.3582 -0.4527 -2.1161 48 1 5.3673 -2.0550 -3.7118 49 1 7.0368 -2.3321 -5.5003 50 1 7.7638 -0.3836 -6.8186 51 1 6.8147 1.8405 -6.3541 52 1 5.1389 2.1162 -4.5712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602711294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:19 Heat of formation + Delta-G solvation = 8.991915 kcal Electronic energy + Delta-G solvation = -27274.069967 eV Core-core repulsion = 23851.091922 eV Total energy + Delta-G solvation = -3422.978045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08469 -39.76174 -37.75811 -35.90669 -34.74368 -33.60723 -31.75805 -31.25786 -29.82731 -28.71622 -27.61024 -26.80533 -24.83874 -24.11232 -23.39388 -23.18086 -21.74130 -20.74364 -20.45066 -18.46550 -17.70735 -17.12585 -16.79716 -16.47685 -16.44365 -15.85723 -15.73103 -15.55257 -15.36393 -15.28209 -14.76887 -14.33325 -14.24056 -14.22340 -13.79879 -13.73050 -13.55977 -13.42264 -13.19096 -13.13023 -12.82946 -12.78247 -12.48863 -12.44469 -12.29868 -12.12433 -12.01649 -11.85996 -11.80825 -11.66903 -11.52343 -11.26919 -11.03546 -10.76238 -10.52163 -9.78328 -9.54542 -9.37861 -9.20364 -8.15975 -6.24563 0.47421 0.53319 1.40113 1.40764 1.53676 2.42750 2.80921 2.92203 3.02549 3.17492 3.74781 3.87318 3.97540 4.07631 4.08914 4.18209 4.19974 4.23902 4.32920 4.36661 4.40855 4.46752 4.49442 4.55405 4.62784 4.68181 4.68423 4.74904 4.79245 4.80617 4.87667 4.94055 4.97735 5.00787 5.04481 5.05303 5.11547 5.20705 5.24702 5.26909 5.40818 5.53262 5.60620 5.62261 5.65787 5.76980 5.83109 5.92064 5.99780 6.02636 6.15442 6.20704 6.24797 6.34819 6.91591 7.43459 8.96147 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003374 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.913140 B = 8296.754711 C = 9940.625112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.065 4.065 3 H 0.053 0.947 4 C 0.035 3.965 5 C -0.525 4.525 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.066 3.934 14 N -0.534 5.534 15 C 0.045 3.955 16 C 0.062 3.938 17 N -0.558 5.558 18 C 0.027 3.973 19 C 0.076 3.924 20 C 0.101 3.899 21 H 0.033 0.967 22 C -0.075 4.075 23 C -0.083 4.083 24 C -0.133 4.133 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.122 4.122 28 C -0.124 4.124 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.048 0.952 32 H -0.012 1.012 33 H -0.014 1.014 34 H 0.261 0.739 35 H 0.029 0.971 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.027 0.973 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.116 0.884 49 H 0.136 0.864 50 H 0.143 0.857 51 H 0.143 0.857 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 4.911 -24.467 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.003 4.003 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.062 4.062 14 N -0.259 5.259 15 C -0.083 4.083 16 C -0.066 4.066 17 N -0.283 5.283 18 C -0.120 4.120 19 C -0.052 4.052 20 C -0.008 4.008 21 H 0.051 0.949 22 C -0.113 4.113 23 C -0.084 4.084 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.140 4.140 28 C -0.142 4.142 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.004 0.996 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.154 0.846 50 H 0.161 0.839 51 H 0.161 0.839 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.196 4.810 -24.367 24.934 hybrid contribution 0.015 -0.054 1.382 1.383 sum 2.210 4.756 -22.984 23.575 Atomic orbital electron populations 1.21804 0.95254 1.00407 1.00806 1.20945 0.96072 0.98691 0.92704 0.92829 1.19014 0.94059 0.94566 0.92631 1.21642 1.36015 1.06369 0.92265 0.92279 1.25924 0.95249 0.96209 1.02509 1.70110 1.41426 1.21928 1.24138 0.85485 0.77978 0.79018 0.79110 1.18616 1.20551 1.20607 1.22238 1.00297 0.93809 0.89840 1.62145 1.02379 1.56142 1.05206 1.22533 0.90967 0.97464 0.97288 1.22170 0.95858 0.97935 0.90666 1.62172 1.02411 1.56673 1.07056 1.22371 1.02776 0.94847 0.92034 1.22093 0.90468 0.96939 0.95708 1.21517 0.90722 0.97555 0.90978 0.94859 1.20669 0.91784 1.02974 0.95845 1.19820 0.97333 0.94118 0.97097 1.21209 0.98099 0.96923 0.98929 1.21392 0.97237 1.00024 0.95595 1.21460 1.00461 0.92648 1.00211 1.21432 0.96587 0.98321 0.97624 1.21227 0.98245 0.98364 0.96317 0.93993 0.92082 0.93264 0.99335 0.99591 0.93004 0.95297 0.91551 0.88706 0.95154 0.94431 0.88780 0.90853 0.90273 0.95412 0.94577 0.89847 0.90567 0.91518 0.86624 0.84568 0.83910 0.83936 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.75 71.98 0.56 -4.12 16 2 C -0.06 -2.70 2.49 -10.79 -0.03 -2.73 16 3 H 0.05 2.34 8.13 -2.39 -0.02 2.32 16 4 C 0.03 1.85 4.41 29.85 0.13 1.98 16 5 C -0.52 -29.92 8.09 25.60 0.21 -29.72 16 6 H 0.06 3.27 7.56 -2.91 -0.02 3.24 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.93 -57.54 13.29 21.44 0.28 -57.25 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.07 2.34 4.45 86.30 0.38 2.72 16 14 N -0.53 -16.02 4.38 -870.46 -3.82 -19.83 16 15 C 0.05 1.21 5.14 86.31 0.44 1.65 16 16 C 0.06 1.38 5.62 86.31 0.49 1.87 16 17 N -0.56 -12.41 4.97 -921.95 -4.58 -16.99 16 18 C 0.03 0.46 9.60 127.69 1.23 1.68 16 19 C 0.08 1.77 4.32 86.31 0.37 2.15 16 20 C 0.10 2.71 2.10 44.92 0.09 2.80 16 21 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 22 C -0.07 -1.99 4.67 29.85 0.14 -1.85 16 23 C -0.08 -1.95 4.31 -19.87 -0.09 -2.03 16 24 C -0.13 -3.05 9.72 22.27 0.22 -2.83 16 25 C -0.12 -2.36 10.05 22.27 0.22 -2.13 16 26 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 27 C -0.12 -2.06 10.05 22.27 0.22 -1.83 16 28 C -0.12 -2.48 8.40 22.27 0.19 -2.30 16 29 H 0.04 1.75 6.89 -2.39 -0.02 1.73 16 30 H 0.06 1.98 7.19 -2.39 -0.02 1.96 16 31 H 0.05 1.68 6.85 -2.39 -0.02 1.66 16 32 H -0.01 -0.68 8.13 -2.39 -0.02 -0.70 16 33 H -0.01 -0.83 8.08 -2.39 -0.02 -0.84 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.03 1.04 7.59 -2.39 -0.02 1.03 16 36 H 0.07 2.43 5.21 -2.39 -0.01 2.42 16 37 H 0.09 2.55 4.37 -2.38 -0.01 2.54 16 38 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 39 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.75 8.13 -2.39 -0.02 1.73 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 43 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 1.86 6.55 -2.39 -0.02 1.84 16 46 H 0.08 2.09 8.05 -2.38 -0.02 2.07 16 47 H 0.07 1.99 5.93 -2.39 -0.01 1.98 16 48 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 49 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 50 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 51 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 52 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -65.31 394.39 0.24 -65.07 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.86 Total: 18.33 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 5.47 Total: -36.25 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -8.11 Total: -94.08 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.31 0.24 -65.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602711294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.060 kcal (2) G-P(sol) polarization free energy of solvation -65.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds