Wall clock time and date at job start Tue Mar 31 2020 11:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46893 * 2 1 4 4 C 1.53000 * 109.47257 * 120.00496 * 2 1 3 5 5 C 1.50705 * 109.46898 * 294.99951 * 4 2 1 6 6 H 1.07997 * 119.99679 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99539 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00242 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99577 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47222 * 120.00294 * 9 7 5 12 12 H 1.48499 * 109.46811 * 240.00033 * 9 7 5 13 13 C 1.53006 * 109.47042 * 240.00657 * 2 1 3 14 14 N 1.46901 * 109.47096 * 64.42651 * 13 2 1 15 15 C 1.46959 * 110.99800 * 67.21898 * 14 13 2 16 16 C 1.53048 * 109.36516 * 183.18441 * 15 14 13 17 17 N 1.46958 * 109.38141 * 301.59049 * 16 15 14 18 18 C 1.46901 * 110.99736 * 183.20051 * 17 16 15 19 19 C 1.46995 * 110.85819 * 59.30523 * 17 16 15 20 20 C 1.46955 * 110.99674 * 191.01430 * 14 13 2 21 21 H 1.09006 * 109.48993 * 296.80204 * 20 14 13 22 22 C 1.53000 * 109.48994 * 56.84708 * 20 14 13 23 23 C 1.50704 * 109.47217 * 182.71124 * 22 20 14 24 24 C 1.38233 * 119.99869 * 263.79236 * 23 22 20 25 25 C 1.38233 * 119.99500 * 179.74437 * 24 23 22 26 26 C 1.38242 * 120.00371 * 0.54915 * 25 24 23 27 27 C 1.38237 * 119.99395 * 359.70222 * 26 25 24 28 28 C 1.38231 * 119.99643 * 84.06597 * 23 22 20 29 29 H 1.08998 * 109.47531 * 305.17200 * 1 2 3 30 30 H 1.09000 * 109.47524 * 65.17099 * 1 2 3 31 31 H 1.09000 * 109.47151 * 185.17000 * 1 2 3 32 32 H 1.08998 * 109.46963 * 54.99827 * 4 2 1 33 33 H 1.09001 * 109.47218 * 175.00070 * 4 2 1 34 34 H 0.97005 * 119.99811 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46605 * 304.43301 * 13 2 1 36 36 H 1.09001 * 109.46792 * 184.42954 * 13 2 1 37 37 H 1.08997 * 109.48663 * 63.21637 * 15 14 13 38 38 H 1.08999 * 109.50548 * 303.16343 * 15 14 13 39 39 H 1.09004 * 109.48691 * 61.56522 * 16 15 14 40 40 H 1.09000 * 109.48883 * 181.60616 * 16 15 14 41 41 H 1.09000 * 109.47290 * 56.03952 * 18 17 16 42 42 H 1.09003 * 109.47198 * 176.04227 * 18 17 16 43 43 H 1.09002 * 109.47011 * 296.03615 * 18 17 16 44 44 H 1.09005 * 109.48431 * 180.71958 * 19 17 16 45 45 H 1.09001 * 109.50081 * 60.67829 * 19 17 16 46 46 H 1.09001 * 109.47025 * 302.71433 * 22 20 14 47 47 H 1.08999 * 109.46822 * 62.71368 * 22 20 14 48 48 H 1.07996 * 120.00213 * 0.02562 * 24 23 22 49 49 H 1.08004 * 120.00189 * 180.27527 * 25 24 23 50 50 H 1.07996 * 120.00332 * 179.72516 * 26 25 24 51 51 H 1.07999 * 119.99534 * 179.97438 * 27 26 25 52 52 H 1.08007 * 120.00247 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9740 2.3757 7 6 1.9924 -0.4025 3.7283 8 7 2.6755 -1.5195 3.8510 9 14 1.4976 0.5617 5.2497 10 1 0.7413 1.7735 4.8436 11 1 0.6434 -0.2877 6.1180 12 1 2.7154 0.9663 5.9970 13 6 2.0400 -0.7211 -1.2494 14 7 1.6395 0.0305 -2.4463 15 6 2.3327 1.3246 -2.5119 16 6 1.8305 2.1084 -3.7268 17 7 2.0699 1.3240 -4.9462 18 6 1.6697 2.0761 -6.1429 19 6 1.3767 0.0294 -4.8803 20 6 1.8790 -0.7543 -3.6655 21 1 2.9470 -0.9449 -3.7715 22 6 1.1299 -2.0851 -3.5712 23 6 1.4290 -2.9174 -4.7915 24 6 0.5579 -2.9084 -5.8648 25 6 0.8349 -3.6677 -6.9861 26 6 1.9773 -4.4450 -7.0297 27 6 2.8457 -4.4580 -5.9542 28 6 2.5715 -3.6943 -4.8351 29 1 -0.3634 0.5919 0.8400 30 1 -0.3634 0.4315 -0.9326 31 1 -0.3633 -1.0235 0.0926 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 2.9222 -1.8429 4.7317 35 1 1.6132 -1.7233 -1.2900 36 1 3.1271 -0.7904 -1.2105 37 1 3.4059 1.1580 -2.6050 38 1 2.1303 1.8924 -1.6038 39 1 0.7624 2.2986 -3.6206 40 1 2.3638 3.0566 -3.7936 41 1 2.1953 3.0307 -6.1648 42 1 1.9221 1.5018 -7.0343 43 1 0.5945 2.2538 -6.1177 44 1 1.5794 -0.5382 -5.7886 45 1 0.3034 0.1957 -4.7875 46 1 1.4519 -2.6208 -2.6782 47 1 0.0581 -1.8955 -3.5146 48 1 -0.3368 -2.3045 -5.8290 49 1 0.1567 -3.6572 -7.8265 50 1 2.1915 -5.0417 -7.9040 51 1 3.7380 -5.0656 -5.9881 52 1 3.2501 -3.7045 -3.9949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602711298.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:25 Heat of formation + Delta-G solvation = 21.225303 kcal Electronic energy + Delta-G solvation = -27220.865835 eV Core-core repulsion = 23798.418270 eV Total energy + Delta-G solvation = -3422.447565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05319 -38.87053 -36.39601 -34.55577 -33.31280 -31.87607 -31.00780 -30.30393 -28.57499 -26.74410 -26.66313 -25.24319 -23.74039 -22.85845 -22.60862 -21.97263 -20.80108 -19.53010 -18.82121 -16.91407 -16.47546 -15.91098 -15.57426 -15.53861 -14.95674 -14.74490 -14.58523 -14.43916 -14.29298 -13.87064 -13.62728 -13.49886 -13.12734 -12.89349 -12.63737 -12.46849 -12.30790 -12.19378 -12.09882 -11.59333 -11.49306 -11.31699 -11.18163 -11.16358 -10.94961 -10.85148 -10.79002 -10.67896 -10.41955 -10.23402 -10.17564 -9.54524 -9.10191 -9.02204 -8.91968 -8.74077 -8.42694 -8.31219 -7.97913 -5.95966 -3.96743 1.24959 1.29304 3.32945 3.40628 3.44578 3.65062 3.86979 4.07835 4.49748 4.71286 4.77821 4.86681 4.92176 4.95768 5.03607 5.10049 5.24584 5.31561 5.35331 5.37221 5.40146 5.44104 5.49185 5.51736 5.65921 5.69997 5.73110 5.76459 5.83997 5.93201 5.94622 5.98498 6.03879 6.10666 6.20479 6.25320 6.35046 6.40029 6.44357 6.56343 6.60143 6.72822 6.90034 6.92383 6.95696 7.06802 7.17213 7.23135 7.42132 7.47370 7.72004 7.88097 8.04621 8.49025 9.09942 9.66655 11.15600 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003148 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.482798 B = 8891.807725 C =10301.332993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.055 3.945 14 N -0.531 5.531 15 C 0.056 3.944 16 C 0.057 3.943 17 N -0.546 5.546 18 C 0.027 3.973 19 C 0.066 3.934 20 C 0.096 3.904 21 H 0.047 0.953 22 C -0.081 4.081 23 C -0.071 4.071 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.118 4.118 28 C -0.115 4.115 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.258 0.742 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.038 0.962 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -0.342 -23.727 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.072 4.072 14 N -0.256 5.256 15 C -0.072 4.072 16 C -0.071 4.071 17 N -0.271 5.271 18 C -0.121 4.121 19 C -0.063 4.063 20 C -0.013 4.013 21 H 0.065 0.935 22 C -0.119 4.119 23 C -0.072 4.072 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.136 4.136 28 C -0.133 4.133 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.251 -0.436 -23.598 23.709 hybrid contribution -0.146 0.398 0.916 1.010 sum -2.396 -0.037 -22.681 22.808 Atomic orbital electron populations 1.21564 0.95833 1.00622 0.99837 1.21205 0.95866 0.99016 0.93728 0.92692 1.19132 0.95879 0.95523 0.90496 1.21268 1.34376 1.08234 0.90965 0.92583 1.25016 0.95381 0.95095 0.99072 1.69975 1.39233 1.21255 1.23213 0.86594 0.78234 0.80151 0.83377 1.19776 1.21114 1.21142 1.22420 0.97618 0.97681 0.89439 1.62196 1.57854 1.03762 1.01770 1.22172 0.96229 0.91042 0.97763 1.22198 0.99580 0.96161 0.89132 1.62149 1.57955 1.04346 1.02636 1.22317 0.98310 0.98537 0.92973 1.22221 0.96145 0.89906 0.97981 1.21519 0.97921 0.91873 0.90027 0.93525 1.20777 1.01788 0.93936 0.95400 1.19907 0.94639 0.96880 0.95725 1.21072 0.99469 0.99585 0.93362 1.21114 0.97435 0.97254 0.98087 1.21109 0.95172 0.99812 0.98618 1.21141 0.99454 0.99260 0.93745 1.21115 0.97019 0.96706 0.98436 0.93121 0.93880 0.94188 0.96636 0.96995 0.93192 0.90750 0.95303 0.94337 0.89344 0.94038 0.90639 0.91514 0.91642 0.95769 0.90519 0.94213 0.89710 0.90101 0.86221 0.86361 0.86441 0.86237 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.86 37.16 0.33 -2.00 16 2 C -0.08 -1.60 2.27 -90.62 -0.21 -1.81 16 3 H 0.05 1.13 6.34 -51.93 -0.33 0.80 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 0.95 4.14 -3.82 -0.02 0.93 16 14 N -0.53 -7.82 3.86 -226.49 -0.87 -8.69 16 15 C 0.06 0.80 5.42 -3.77 -0.02 0.78 16 16 C 0.06 0.70 5.62 -3.77 -0.02 0.68 16 17 N -0.55 -6.54 4.97 -242.72 -1.21 -7.74 16 18 C 0.03 0.26 9.61 60.07 0.58 0.83 16 19 C 0.07 0.78 4.46 -3.75 -0.02 0.76 16 20 C 0.10 1.24 2.05 -67.66 -0.14 1.10 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.08 -0.98 4.64 -27.88 -0.13 -1.11 16 23 C -0.07 -0.79 4.46 -104.62 -0.47 -1.26 16 24 C -0.12 -1.17 8.46 -39.59 -0.34 -1.51 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 26 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.11 -1.26 9.73 -39.59 -0.38 -1.65 16 29 H 0.05 1.04 7.11 -51.93 -0.37 0.67 16 30 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.26 5.63 -51.93 -0.29 0.96 16 36 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.32 6.30 -51.93 -0.33 0.99 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 41 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.08 0.88 6.63 -51.93 -0.34 0.53 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 1.10 5.96 -51.93 -0.31 0.79 16 47 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 50 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 52 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -30.08 398.13 -12.37 -42.45 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -9.47 Total: -1.12 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.53 Total: -21.38 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -1.34 Total: -42.69 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.08 -12.37 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602711298.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.678 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds