Wall clock time and date at job start Tue Mar 31 2020 11:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46893 * 2 1 4 4 C 1.53000 * 109.47257 * 120.00496 * 2 1 3 5 5 C 1.50705 * 109.46898 * 294.99951 * 4 2 1 6 6 H 1.07997 * 119.99679 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99539 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00242 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99577 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47222 * 120.00294 * 9 7 5 12 12 H 1.48499 * 109.46811 * 240.00033 * 9 7 5 13 13 C 1.53006 * 109.47042 * 240.00657 * 2 1 3 14 14 N 1.46901 * 109.47096 * 64.42651 * 13 2 1 15 15 C 1.46959 * 110.99800 * 67.21898 * 14 13 2 16 16 C 1.53048 * 109.36516 * 183.18441 * 15 14 13 17 17 N 1.46958 * 109.38141 * 301.59049 * 16 15 14 18 18 C 1.46901 * 110.99736 * 183.20051 * 17 16 15 19 19 C 1.46995 * 110.85819 * 59.30523 * 17 16 15 20 20 C 1.46955 * 110.99674 * 191.01430 * 14 13 2 21 21 H 1.09006 * 109.48993 * 296.80204 * 20 14 13 22 22 C 1.53000 * 109.48994 * 56.84708 * 20 14 13 23 23 C 1.50704 * 109.47217 * 182.71124 * 22 20 14 24 24 C 1.38233 * 119.99869 * 263.79236 * 23 22 20 25 25 C 1.38233 * 119.99500 * 179.74437 * 24 23 22 26 26 C 1.38242 * 120.00371 * 0.54915 * 25 24 23 27 27 C 1.38237 * 119.99395 * 359.70222 * 26 25 24 28 28 C 1.38231 * 119.99643 * 84.06597 * 23 22 20 29 29 H 1.08998 * 109.47531 * 305.17200 * 1 2 3 30 30 H 1.09000 * 109.47524 * 65.17099 * 1 2 3 31 31 H 1.09000 * 109.47151 * 185.17000 * 1 2 3 32 32 H 1.08998 * 109.46963 * 54.99827 * 4 2 1 33 33 H 1.09001 * 109.47218 * 175.00070 * 4 2 1 34 34 H 0.97005 * 119.99811 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46605 * 304.43301 * 13 2 1 36 36 H 1.09001 * 109.46792 * 184.42954 * 13 2 1 37 37 H 1.08997 * 109.48663 * 63.21637 * 15 14 13 38 38 H 1.08999 * 109.50548 * 303.16343 * 15 14 13 39 39 H 1.09004 * 109.48691 * 61.56522 * 16 15 14 40 40 H 1.09000 * 109.48883 * 181.60616 * 16 15 14 41 41 H 1.09000 * 109.47290 * 56.03952 * 18 17 16 42 42 H 1.09003 * 109.47198 * 176.04227 * 18 17 16 43 43 H 1.09002 * 109.47011 * 296.03615 * 18 17 16 44 44 H 1.09005 * 109.48431 * 180.71958 * 19 17 16 45 45 H 1.09001 * 109.50081 * 60.67829 * 19 17 16 46 46 H 1.09001 * 109.47025 * 302.71433 * 22 20 14 47 47 H 1.08999 * 109.46822 * 62.71368 * 22 20 14 48 48 H 1.07996 * 120.00213 * 0.02562 * 24 23 22 49 49 H 1.08004 * 120.00189 * 180.27527 * 25 24 23 50 50 H 1.07996 * 120.00332 * 179.72516 * 26 25 24 51 51 H 1.07999 * 119.99534 * 179.97438 * 27 26 25 52 52 H 1.08007 * 120.00247 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9740 2.3757 7 6 1.9924 -0.4025 3.7283 8 7 2.6755 -1.5195 3.8510 9 14 1.4976 0.5617 5.2497 10 1 0.7413 1.7735 4.8436 11 1 0.6434 -0.2877 6.1180 12 1 2.7154 0.9663 5.9970 13 6 2.0400 -0.7211 -1.2494 14 7 1.6395 0.0305 -2.4463 15 6 2.3327 1.3246 -2.5119 16 6 1.8305 2.1084 -3.7268 17 7 2.0699 1.3240 -4.9462 18 6 1.6697 2.0761 -6.1429 19 6 1.3767 0.0294 -4.8803 20 6 1.8790 -0.7543 -3.6655 21 1 2.9470 -0.9449 -3.7715 22 6 1.1299 -2.0851 -3.5712 23 6 1.4290 -2.9174 -4.7915 24 6 0.5579 -2.9084 -5.8648 25 6 0.8349 -3.6677 -6.9861 26 6 1.9773 -4.4450 -7.0297 27 6 2.8457 -4.4580 -5.9542 28 6 2.5715 -3.6943 -4.8351 29 1 -0.3634 0.5919 0.8400 30 1 -0.3634 0.4315 -0.9326 31 1 -0.3633 -1.0235 0.0926 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 2.9222 -1.8429 4.7317 35 1 1.6132 -1.7233 -1.2900 36 1 3.1271 -0.7904 -1.2105 37 1 3.4059 1.1580 -2.6050 38 1 2.1303 1.8924 -1.6038 39 1 0.7624 2.2986 -3.6206 40 1 2.3638 3.0566 -3.7936 41 1 2.1953 3.0307 -6.1648 42 1 1.9221 1.5018 -7.0343 43 1 0.5945 2.2538 -6.1177 44 1 1.5794 -0.5382 -5.7886 45 1 0.3034 0.1957 -4.7875 46 1 1.4519 -2.6208 -2.6782 47 1 0.0581 -1.8955 -3.5146 48 1 -0.3368 -2.3045 -5.8290 49 1 0.1567 -3.6572 -7.8265 50 1 2.1915 -5.0417 -7.9040 51 1 3.7380 -5.0656 -5.9881 52 1 3.2501 -3.7045 -3.9949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602711298.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:24 Heat of formation + Delta-G solvation = 5.164369 kcal Electronic energy + Delta-G solvation = -27221.562290 eV Core-core repulsion = 23798.418270 eV Total energy + Delta-G solvation = -3423.144020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05639 -39.75242 -37.74733 -35.90243 -34.69515 -33.65740 -31.74930 -31.22531 -29.83829 -28.58949 -27.57976 -26.63909 -25.09254 -24.19696 -23.39428 -23.17982 -21.68003 -20.74894 -20.36709 -18.51443 -17.68918 -17.17572 -16.56622 -16.46136 -16.41988 -15.94007 -15.69025 -15.65191 -15.37034 -15.09563 -14.99753 -14.34198 -14.23340 -14.12036 -13.89665 -13.80476 -13.55291 -13.30274 -13.13513 -13.02589 -12.86790 -12.75849 -12.51276 -12.44541 -12.26891 -12.14090 -12.10412 -11.93491 -11.82667 -11.69723 -11.50881 -11.26355 -11.01050 -10.84150 -10.53003 -9.77644 -9.54247 -9.37814 -9.21314 -8.16845 -6.25690 0.47988 0.53991 1.39715 1.40217 1.53152 2.42072 2.79776 2.92373 3.02868 3.16747 3.76020 3.88021 3.94792 4.06130 4.08952 4.18663 4.22632 4.26236 4.33354 4.35530 4.41150 4.47756 4.49999 4.56136 4.63557 4.68300 4.69426 4.77456 4.80753 4.82989 4.89464 4.93858 4.98354 5.01603 5.02150 5.08984 5.12734 5.21347 5.25550 5.31592 5.48974 5.50941 5.56318 5.62032 5.66604 5.77510 5.81345 5.89928 5.98962 6.00429 6.15689 6.19883 6.22454 6.33110 6.90452 7.42574 8.95445 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003148 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.482798 B = 8891.807725 C =10301.332993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 H 0.053 0.947 4 C 0.034 3.966 5 C -0.525 4.525 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.069 3.931 14 N -0.528 5.528 15 C 0.054 3.946 16 C 0.065 3.935 17 N -0.560 5.560 18 C 0.028 3.972 19 C 0.075 3.925 20 C 0.100 3.900 21 H 0.030 0.970 22 C -0.073 4.073 23 C -0.084 4.084 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.134 4.134 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.034 0.966 32 H -0.010 1.010 33 H -0.018 1.018 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.014 0.986 37 H 0.027 0.973 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.029 0.971 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.131 0.869 49 H 0.143 0.857 50 H 0.142 0.858 51 H 0.134 0.866 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 0.647 -25.717 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.059 4.059 14 N -0.252 5.252 15 C -0.074 4.074 16 C -0.063 4.063 17 N -0.285 5.285 18 C -0.120 4.120 19 C -0.053 4.053 20 C -0.009 4.009 21 H 0.048 0.952 22 C -0.111 4.111 23 C -0.084 4.084 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.144 4.144 28 C -0.153 4.153 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.009 0.991 33 H 0.001 0.999 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.149 0.851 49 H 0.161 0.839 50 H 0.160 0.840 51 H 0.152 0.848 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.529 0.566 -25.611 25.859 hybrid contribution 0.299 0.043 1.470 1.500 sum -3.230 0.609 -24.141 24.364 Atomic orbital electron populations 1.21439 0.94570 1.00244 1.00400 1.20995 0.96711 0.98340 0.92730 0.92902 1.19009 0.93887 0.94696 0.92768 1.21647 1.34195 1.08485 0.92007 0.92153 1.25939 0.95309 0.96094 1.02615 1.70110 1.40417 1.22963 1.24158 0.85474 0.78050 0.78932 0.79069 1.18551 1.20546 1.20606 1.22126 0.96491 0.97698 0.89573 1.62182 1.57578 1.03956 1.01491 1.22203 0.95649 0.90831 0.98725 1.22120 0.99571 0.96312 0.88298 1.62153 1.58417 1.04603 1.03346 1.22367 0.98790 0.98824 0.91983 1.22112 0.95979 0.89919 0.97260 1.21531 0.97177 0.92444 0.89731 0.95234 1.20649 1.01521 0.93435 0.95504 1.19845 0.95347 0.97423 0.95832 1.21241 0.99546 0.99915 0.93240 1.21447 0.97729 0.96408 0.98394 1.21455 0.94759 0.99613 0.99006 1.21381 1.00317 0.99150 0.93570 1.21208 0.97309 0.97725 0.99021 0.94484 0.91552 0.94649 0.99141 0.99918 0.92991 0.90642 0.96820 0.95475 0.90230 0.94064 0.89061 0.90483 0.90774 0.95207 0.89759 0.94102 0.91416 0.89902 0.85064 0.83883 0.84038 0.84811 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.19 8.86 71.98 0.64 -3.55 16 2 C -0.07 -2.86 2.27 -10.79 -0.02 -2.88 16 3 H 0.05 2.22 6.34 -2.39 -0.02 2.20 16 4 C 0.03 1.81 4.45 29.85 0.13 1.94 16 5 C -0.53 -29.95 8.47 25.60 0.22 -29.73 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.07 2.44 4.14 86.31 0.36 2.80 16 14 N -0.53 -15.58 3.86 -870.47 -3.36 -18.94 16 15 C 0.05 1.53 5.42 86.31 0.47 1.99 16 16 C 0.07 1.49 5.62 86.31 0.48 1.97 16 17 N -0.56 -12.41 4.97 -921.82 -4.58 -16.99 16 18 C 0.03 0.46 9.61 127.69 1.23 1.69 16 19 C 0.08 1.68 4.46 86.30 0.38 2.06 16 20 C 0.10 2.59 2.05 44.92 0.09 2.69 16 21 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 22 C -0.07 -1.78 4.64 29.85 0.14 -1.64 16 23 C -0.08 -1.84 4.46 -19.87 -0.09 -1.93 16 24 C -0.12 -2.23 8.46 22.27 0.19 -2.04 16 25 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 27 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 28 C -0.13 -2.99 9.73 22.27 0.22 -2.78 16 29 H 0.04 1.50 7.11 -2.39 -0.02 1.48 16 30 H 0.07 2.22 7.60 -2.39 -0.02 2.21 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 33 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 35 H 0.08 2.67 5.63 -2.39 -0.01 2.66 16 36 H 0.01 0.52 8.11 -2.39 -0.02 0.50 16 37 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 2.37 6.30 -2.39 -0.02 2.36 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 41 H 0.08 1.10 8.13 -2.39 -0.02 1.09 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 1.77 6.63 -2.38 -0.02 1.76 16 45 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 1.85 5.96 -2.39 -0.01 1.84 16 47 H 0.08 1.96 8.04 -2.39 -0.02 1.94 16 48 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 49 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 50 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 51 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 52 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -65.40 398.13 0.79 -64.61 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.85 Total: 16.60 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 5.57 Total: -34.77 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -7.66 Total: -93.36 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.40 0.79 -64.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602711298.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.777 kcal (2) G-P(sol) polarization free energy of solvation -65.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds