Wall clock time and date at job start Tue Mar 31 2020 11:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46741 * 2 1 4 4 C 1.52995 * 109.47526 * 119.99828 * 2 1 3 5 5 C 1.50707 * 109.47161 * 295.00255 * 4 2 1 6 6 H 1.07991 * 119.99972 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99681 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00251 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99683 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47137 * 59.99859 * 9 7 5 11 11 H 1.48499 * 109.46897 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47050 * 300.00056 * 9 7 5 13 13 C 1.52997 * 109.47201 * 240.00159 * 2 1 3 14 14 N 1.46900 * 109.47020 * 64.99499 * 13 2 1 15 15 C 1.46911 * 110.99783 * 180.02562 * 14 13 2 16 16 C 1.53002 * 110.36661 * 60.73013 * 15 14 13 17 17 C 1.54257 * 110.32143 * 298.54673 * 15 14 13 18 18 C 1.54381 * 105.14978 * 241.05161 * 17 15 14 19 19 N 1.48720 * 104.51692 * 336.27274 * 18 17 15 20 20 C 1.46900 * 111.01831 * 158.96284 * 19 18 17 21 21 C 1.50707 * 109.46999 * 74.48981 * 20 19 18 22 22 C 1.38231 * 119.99943 * 269.73054 * 21 20 19 23 23 C 1.38233 * 119.99875 * 179.76445 * 22 21 20 24 24 C 1.38236 * 119.99779 * 0.48323 * 23 22 21 25 25 C 1.38232 * 120.00220 * 359.79179 * 24 23 22 26 26 C 1.38232 * 119.99692 * 89.99781 * 21 20 19 27 27 C 1.48567 * 104.28820 * 39.36098 * 19 18 17 28 28 H 1.08992 * 109.47302 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47034 * 299.99578 * 1 2 3 31 31 H 1.08996 * 109.47218 * 54.99907 * 4 2 1 32 32 H 1.09000 * 109.47607 * 175.00364 * 4 2 1 33 33 H 0.97005 * 119.99604 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46901 * 304.99766 * 13 2 1 35 35 H 1.09000 * 109.47498 * 184.99519 * 13 2 1 36 36 H 1.00901 * 110.99942 * 56.05000 * 14 13 2 37 37 H 1.08999 * 109.46787 * 299.26920 * 16 15 14 38 38 H 1.08998 * 109.47221 * 59.27282 * 16 15 14 39 39 H 1.08996 * 109.46887 * 179.27339 * 16 15 14 40 40 H 1.09002 * 110.32715 * 0.02562 * 17 15 14 41 41 H 1.08998 * 110.32251 * 122.10743 * 17 15 14 42 42 H 1.09004 * 110.40867 * 94.98012 * 18 17 15 43 43 H 1.08996 * 110.41187 * 217.42234 * 18 17 15 44 44 H 1.08997 * 109.47620 * 194.49319 * 20 19 18 45 45 H 1.08999 * 109.47148 * 314.49752 * 20 19 18 46 46 H 1.07998 * 120.00210 * 359.97438 * 22 21 20 47 47 H 1.08005 * 120.00407 * 180.25271 * 23 22 21 48 48 H 1.08009 * 119.99936 * 179.76704 * 24 23 22 49 49 H 1.08000 * 120.00142 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.00498 * 0.02562 * 26 21 20 51 51 H 1.08999 * 110.41133 * 201.79165 * 27 19 18 52 52 H 1.09001 * 110.41003 * 79.35561 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9925 -0.4022 3.7283 8 7 2.6749 -1.5197 3.8512 9 14 1.4989 0.5629 5.2496 10 1 0.0190 0.6706 5.3091 11 1 1.9929 -0.1378 6.4622 12 1 2.0920 1.9230 5.1871 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 6 1.5124 -2.0244 -3.7847 17 6 3.6647 -0.7152 -3.6668 18 6 4.1149 0.0836 -4.9088 19 7 2.9370 0.0570 -5.8162 20 6 2.9998 1.1521 -6.7934 21 6 4.0346 0.8317 -7.8411 22 6 5.3457 1.2317 -7.6628 23 6 6.2957 0.9335 -8.6216 24 6 5.9327 0.2440 -9.7634 25 6 4.6204 -0.1511 -9.9444 26 6 3.6714 0.1425 -8.9831 27 6 1.7716 0.2192 -4.9092 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -1.7197 1.2952 32 1 3.1264 -0.7993 1.2056 33 1 2.9222 -1.8425 4.7318 34 1 1.6054 -1.7197 -1.2951 35 1 3.1263 -0.7994 -1.2057 36 1 1.9880 0.9874 -2.3966 37 1 1.8127 -2.6259 -2.9268 38 1 0.4257 -1.9440 -3.8097 39 1 1.8629 -2.4987 -4.7014 40 1 4.0694 -0.2657 -2.7599 41 1 3.9845 -1.7540 -3.7485 42 1 4.3588 1.1096 -4.6329 43 1 4.9714 -0.3979 -5.3805 44 1 2.0262 1.2713 -7.2687 45 1 3.2718 2.0773 -6.2853 46 1 5.6284 1.7743 -6.7728 47 1 7.3210 1.2425 -8.4804 48 1 6.6743 0.0143 -10.5143 49 1 4.3367 -0.6894 -10.8366 50 1 2.6461 -0.1659 -9.1246 51 1 0.8658 -0.1598 -5.3825 52 1 1.6476 1.2663 -4.6330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:06 Heat of formation + Delta-G solvation = 15.364179 kcal Electronic energy + Delta-G solvation = -26243.172016 eV Core-core repulsion = 22820.470294 eV Total energy + Delta-G solvation = -3422.701723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13181 -39.12114 -36.53884 -34.54530 -32.57565 -31.63430 -31.15550 -29.82143 -29.45405 -26.93856 -26.70135 -25.30060 -24.35449 -22.89089 -22.44383 -21.83003 -20.90427 -19.18491 -19.02372 -17.06906 -16.30418 -16.18067 -16.00571 -15.49099 -15.22648 -14.83046 -14.52144 -14.24608 -13.99306 -13.83985 -13.65440 -13.47514 -13.23475 -12.92250 -12.74101 -12.45098 -12.16598 -12.05385 -11.88146 -11.74365 -11.58973 -11.44197 -11.21586 -11.19852 -11.10343 -10.88232 -10.82357 -10.69849 -10.53082 -10.26423 -10.19784 -9.66209 -9.17999 -9.14379 -9.06007 -8.94029 -8.65283 -8.31628 -8.08040 -5.96475 -3.97582 1.07366 1.15567 3.34779 3.39171 3.41510 3.42531 3.93207 4.31869 4.46890 4.51070 4.54698 4.58435 4.74083 4.82278 4.88614 4.92549 5.03591 5.14893 5.22939 5.27576 5.35390 5.38007 5.39130 5.51550 5.64942 5.73286 5.75091 5.76459 5.79321 5.82875 5.89260 5.98375 6.00131 6.14392 6.18907 6.24473 6.25273 6.33860 6.34913 6.47718 6.56681 6.61385 6.71201 6.72309 6.80246 7.05389 7.19984 7.22739 7.42353 7.66050 7.71351 7.87084 8.03796 8.47853 9.08591 9.65576 11.14935 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028758 B = 0.002086 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.411882 B =13422.378895 C =13757.929229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.051 0.949 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.062 3.938 14 N -0.675 5.675 15 C 0.113 3.887 16 C -0.129 4.129 17 C -0.157 4.157 18 C 0.036 3.964 19 N -0.503 5.503 20 C 0.081 3.919 21 C -0.072 4.072 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.100 4.100 27 C 0.046 3.954 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.335 0.665 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.086 0.914 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 3.763 -27.540 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.305 5.305 15 C 0.021 3.979 16 C -0.187 4.187 17 C -0.197 4.197 18 C -0.092 4.092 19 N -0.227 5.227 20 C -0.047 4.047 21 C -0.072 4.072 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.118 4.118 27 C -0.082 4.082 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.105 0.895 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.052 2.873 -27.737 28.052 hybrid contribution 0.963 1.423 1.441 2.243 sum 4.016 4.296 -26.296 26.946 Atomic orbital electron populations 1.21580 0.95747 1.00545 1.00062 1.21198 0.95981 0.98803 0.94136 0.93045 1.19107 0.95834 0.95566 0.90433 1.21200 1.34640 1.08253 0.91010 0.92661 1.25026 0.95376 0.95112 0.99087 1.69957 1.39066 1.21175 1.23448 0.86692 0.78901 0.80080 0.82514 1.20277 1.21385 1.20349 1.22202 0.97358 0.97998 0.89076 1.60688 1.63455 1.05229 1.01155 1.21594 0.91401 0.95025 0.89878 1.21796 1.01021 0.94311 1.01575 1.23166 0.97639 1.01419 0.97432 1.23132 0.94329 0.98818 0.92879 1.65437 1.02743 1.41571 1.12980 1.21206 0.98049 0.92542 0.92854 1.19714 0.94229 0.98119 0.95176 1.21063 0.92793 1.00282 0.99029 1.21120 0.99321 0.99128 0.94383 1.21145 0.96353 0.98891 0.97784 1.21152 0.93399 1.00222 0.99245 1.21024 0.99696 0.97616 0.93483 1.23155 0.94198 0.98682 0.92209 0.93965 0.94186 0.92884 0.96582 0.97021 0.93063 0.91176 0.95539 0.84738 0.92379 0.92044 0.92089 0.90855 0.90756 0.94046 0.90311 0.89865 0.93612 0.86468 0.86221 0.86308 0.86176 0.86028 0.89543 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.68 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.05 4.40 -3.83 -0.02 1.03 16 14 N -0.67 -9.41 5.55 -98.56 -0.55 -9.96 16 15 C 0.11 1.36 0.94 -130.22 -0.12 1.24 16 16 C -0.13 -1.58 7.99 37.16 0.30 -1.28 16 17 C -0.16 -1.85 5.78 -25.35 -0.15 -2.00 16 18 C 0.04 0.38 5.72 -2.09 -0.01 0.37 16 19 N -0.50 -5.15 5.32 -231.26 -1.23 -6.38 16 20 C 0.08 0.72 4.98 -4.97 -0.02 0.70 16 21 C -0.07 -0.66 5.19 -104.62 -0.54 -1.20 16 22 C -0.11 -1.00 8.96 -39.59 -0.35 -1.35 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 27 C 0.05 0.48 5.70 -2.18 -0.01 0.47 16 28 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 1.23 6.41 -51.93 -0.33 0.90 16 35 H 0.03 0.46 6.44 -51.93 -0.33 0.13 16 36 H 0.33 4.52 8.55 -39.29 -0.34 4.18 16 37 H 0.06 0.76 6.55 -51.93 -0.34 0.42 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.94 6.54 -51.93 -0.34 0.60 16 41 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 42 H 0.04 0.42 7.75 -51.93 -0.40 0.02 16 43 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 44 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 45 H 0.05 0.40 7.71 -51.93 -0.40 0.00 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 48 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 52 H 0.05 0.51 7.74 -51.93 -0.40 0.11 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -29.80 402.62 -12.36 -42.16 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -9.44 Total: 1.58 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -2.92 Total: -23.92 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -1.04 Total: -42.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.80 -12.36 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.520 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds