Wall clock time and date at job start Tue Mar 31 2020 11:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46741 * 2 1 4 4 C 1.52995 * 109.47526 * 119.99828 * 2 1 3 5 5 C 1.50707 * 109.47161 * 295.00255 * 4 2 1 6 6 H 1.07991 * 119.99972 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99681 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00251 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99683 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47137 * 59.99859 * 9 7 5 11 11 H 1.48499 * 109.46897 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47050 * 300.00056 * 9 7 5 13 13 C 1.52997 * 109.47201 * 240.00159 * 2 1 3 14 14 N 1.46900 * 109.47020 * 64.99499 * 13 2 1 15 15 C 1.46911 * 110.99783 * 180.02562 * 14 13 2 16 16 C 1.53002 * 110.36661 * 60.73013 * 15 14 13 17 17 C 1.54257 * 110.32143 * 298.54673 * 15 14 13 18 18 C 1.54381 * 105.14978 * 241.05161 * 17 15 14 19 19 N 1.48720 * 104.51692 * 336.27274 * 18 17 15 20 20 C 1.46900 * 111.01831 * 158.96284 * 19 18 17 21 21 C 1.50707 * 109.46999 * 74.48981 * 20 19 18 22 22 C 1.38231 * 119.99943 * 269.73054 * 21 20 19 23 23 C 1.38233 * 119.99875 * 179.76445 * 22 21 20 24 24 C 1.38236 * 119.99779 * 0.48323 * 23 22 21 25 25 C 1.38232 * 120.00220 * 359.79179 * 24 23 22 26 26 C 1.38232 * 119.99692 * 89.99781 * 21 20 19 27 27 C 1.48567 * 104.28820 * 39.36098 * 19 18 17 28 28 H 1.08992 * 109.47302 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47034 * 299.99578 * 1 2 3 31 31 H 1.08996 * 109.47218 * 54.99907 * 4 2 1 32 32 H 1.09000 * 109.47607 * 175.00364 * 4 2 1 33 33 H 0.97005 * 119.99604 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46901 * 304.99766 * 13 2 1 35 35 H 1.09000 * 109.47498 * 184.99519 * 13 2 1 36 36 H 1.00901 * 110.99942 * 56.05000 * 14 13 2 37 37 H 1.08999 * 109.46787 * 299.26920 * 16 15 14 38 38 H 1.08998 * 109.47221 * 59.27282 * 16 15 14 39 39 H 1.08996 * 109.46887 * 179.27339 * 16 15 14 40 40 H 1.09002 * 110.32715 * 0.02562 * 17 15 14 41 41 H 1.08998 * 110.32251 * 122.10743 * 17 15 14 42 42 H 1.09004 * 110.40867 * 94.98012 * 18 17 15 43 43 H 1.08996 * 110.41187 * 217.42234 * 18 17 15 44 44 H 1.08997 * 109.47620 * 194.49319 * 20 19 18 45 45 H 1.08999 * 109.47148 * 314.49752 * 20 19 18 46 46 H 1.07998 * 120.00210 * 359.97438 * 22 21 20 47 47 H 1.08005 * 120.00407 * 180.25271 * 23 22 21 48 48 H 1.08009 * 119.99936 * 179.76704 * 24 23 22 49 49 H 1.08000 * 120.00142 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.00498 * 0.02562 * 26 21 20 51 51 H 1.08999 * 110.41133 * 201.79165 * 27 19 18 52 52 H 1.09001 * 110.41003 * 79.35561 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9925 -0.4022 3.7283 8 7 2.6749 -1.5197 3.8512 9 14 1.4989 0.5629 5.2496 10 1 0.0190 0.6706 5.3091 11 1 1.9929 -0.1378 6.4622 12 1 2.0920 1.9230 5.1871 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 6 1.5124 -2.0244 -3.7847 17 6 3.6647 -0.7152 -3.6668 18 6 4.1149 0.0836 -4.9088 19 7 2.9370 0.0570 -5.8162 20 6 2.9998 1.1521 -6.7934 21 6 4.0346 0.8317 -7.8411 22 6 5.3457 1.2317 -7.6628 23 6 6.2957 0.9335 -8.6216 24 6 5.9327 0.2440 -9.7634 25 6 4.6204 -0.1511 -9.9444 26 6 3.6714 0.1425 -8.9831 27 6 1.7716 0.2192 -4.9092 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -1.7197 1.2952 32 1 3.1264 -0.7993 1.2056 33 1 2.9222 -1.8425 4.7318 34 1 1.6054 -1.7197 -1.2951 35 1 3.1263 -0.7994 -1.2057 36 1 1.9880 0.9874 -2.3966 37 1 1.8127 -2.6259 -2.9268 38 1 0.4257 -1.9440 -3.8097 39 1 1.8629 -2.4987 -4.7014 40 1 4.0694 -0.2657 -2.7599 41 1 3.9845 -1.7540 -3.7485 42 1 4.3588 1.1096 -4.6329 43 1 4.9714 -0.3979 -5.3805 44 1 2.0262 1.2713 -7.2687 45 1 3.2718 2.0773 -6.2853 46 1 5.6284 1.7743 -6.7728 47 1 7.3210 1.2425 -8.4804 48 1 6.6743 0.0143 -10.5143 49 1 4.3367 -0.6894 -10.8366 50 1 2.6461 -0.1659 -9.1246 51 1 0.8658 -0.1598 -5.3825 52 1 1.6476 1.2663 -4.6330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602714259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:05 Heat of formation + Delta-G solvation = -1.028048 kcal Electronic energy + Delta-G solvation = -26243.882837 eV Core-core repulsion = 22820.470294 eV Total energy + Delta-G solvation = -3423.412543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97550 -39.86217 -37.87632 -35.90954 -34.31641 -32.74813 -31.75094 -30.79474 -30.51928 -28.72324 -27.76591 -26.59262 -25.48487 -24.24672 -23.42330 -22.62767 -21.65365 -20.72669 -20.16697 -18.45655 -17.71379 -17.11439 -16.84470 -16.51217 -16.25842 -16.01378 -15.80569 -15.63008 -14.98043 -14.94308 -14.53531 -14.39023 -14.25588 -14.09995 -13.94366 -13.62504 -13.42301 -13.21048 -13.16591 -12.91047 -12.81184 -12.71628 -12.67617 -12.36902 -12.23631 -12.12975 -12.01557 -11.92028 -11.81184 -11.74054 -11.56555 -11.35296 -11.05994 -10.88595 -10.52737 -9.78827 -9.72230 -9.41652 -9.27202 -8.17036 -6.26179 0.45870 0.54944 1.39824 1.42630 1.50275 2.41929 2.73478 3.10543 3.16083 3.36191 3.60838 3.71713 3.94054 3.96327 4.03938 4.17275 4.20150 4.26344 4.29765 4.35653 4.38431 4.41996 4.54646 4.59691 4.64969 4.68319 4.76684 4.81070 4.82210 4.87415 4.92800 4.96149 5.03900 5.05000 5.06525 5.15165 5.20098 5.23385 5.30830 5.37339 5.48152 5.52425 5.56096 5.59677 5.66059 5.68116 5.80354 5.83357 5.89745 5.99047 6.16695 6.17479 6.32793 6.52422 6.89760 7.41865 8.94675 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028758 B = 0.002086 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.411882 B =13422.378895 C =13757.929229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.079 3.921 14 N -0.669 5.669 15 C 0.112 3.888 16 C -0.126 4.126 17 C -0.155 4.155 18 C 0.044 3.956 19 N -0.507 5.507 20 C 0.084 3.916 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.112 4.112 27 C 0.053 3.947 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.036 0.964 31 H -0.012 1.012 32 H -0.016 1.016 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.340 0.660 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.120 0.880 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.129 0.871 51 H 0.093 0.907 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 5.030 -28.935 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.050 4.050 14 N -0.300 5.300 15 C 0.021 3.979 16 C -0.183 4.183 17 C -0.195 4.195 18 C -0.084 4.084 19 N -0.231 5.231 20 C -0.044 4.044 21 C -0.085 4.085 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.130 4.130 27 C -0.075 4.075 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.007 0.993 32 H 0.003 0.997 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.159 0.841 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.138 0.862 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.156 0.844 50 H 0.147 0.853 51 H 0.111 0.889 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.519 4.155 -29.156 29.558 hybrid contribution 1.173 0.994 1.805 2.371 sum 3.691 5.149 -27.351 28.075 Atomic orbital electron populations 1.21475 0.94676 1.00296 1.00480 1.21010 0.96707 0.98301 0.93222 0.92955 1.18998 0.93962 0.94648 0.92806 1.21611 1.34426 1.08563 0.92071 0.92095 1.25970 0.95329 0.96139 1.02691 1.70099 1.40289 1.22895 1.24289 0.85562 0.78925 0.78768 0.78165 1.19253 1.21075 1.19231 1.21845 0.96602 0.97511 0.89067 1.60613 1.63429 1.05297 1.00622 1.21652 0.91490 0.95192 0.89603 1.21762 1.01056 0.94189 1.01333 1.23102 0.97465 1.01260 0.97652 1.23035 0.94442 0.98722 0.92185 1.65435 1.02283 1.42481 1.12868 1.21217 0.98615 0.92044 0.92478 1.19807 0.94433 0.98750 0.95530 1.21214 0.93015 1.00661 0.99509 1.21387 1.00028 0.99085 0.94414 1.21454 0.96862 0.98414 0.98095 1.21439 0.93433 1.00112 0.99744 1.21223 1.00381 0.97765 0.93645 1.23072 0.94564 0.98511 0.91353 0.91314 0.94760 0.94524 0.99318 0.99747 0.92981 0.91867 0.96338 0.84114 0.93859 0.91933 0.91223 0.92106 0.91307 0.93581 0.90474 0.88935 0.93369 0.86150 0.84786 0.84412 0.84404 0.85284 0.88899 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.89 71.98 0.64 -3.62 16 2 C -0.07 -2.99 2.48 -10.80 -0.03 -3.01 16 3 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.03 1.77 4.45 29.85 0.13 1.90 16 5 C -0.53 -30.06 8.41 25.60 0.22 -29.85 16 6 H 0.06 3.32 7.06 -2.92 -0.02 3.30 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 8 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.08 2.67 4.40 86.30 0.38 3.05 16 14 N -0.67 -17.86 5.55 -465.75 -2.59 -20.45 16 15 C 0.11 2.58 0.94 4.42 0.00 2.58 16 16 C -0.13 -2.95 7.99 71.98 0.57 -2.38 16 17 C -0.15 -3.59 5.78 31.49 0.18 -3.40 16 18 C 0.04 0.88 5.72 86.42 0.49 1.37 16 19 N -0.51 -9.52 5.32 -885.58 -4.72 -14.24 16 20 C 0.08 1.35 4.98 85.56 0.43 1.78 16 21 C -0.08 -1.44 5.19 -19.87 -0.10 -1.54 16 22 C -0.13 -2.07 8.96 22.27 0.20 -1.87 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 26 C -0.11 -1.78 9.70 22.27 0.22 -1.56 16 27 C 0.05 1.02 5.70 86.45 0.49 1.51 16 28 H 0.07 2.24 7.75 -2.39 -0.02 2.22 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 34 H 0.06 2.24 6.41 -2.39 -0.02 2.23 16 35 H 0.02 0.66 6.44 -2.39 -0.02 0.64 16 36 H 0.34 8.64 8.55 -89.69 -0.77 7.87 16 37 H 0.04 1.13 6.55 -2.39 -0.02 1.12 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.56 6.54 -2.39 -0.02 1.55 16 41 H 0.07 1.66 7.71 -2.39 -0.02 1.64 16 42 H 0.05 0.88 7.75 -2.38 -0.02 0.86 16 43 H 0.08 1.57 7.91 -2.39 -0.02 1.56 16 44 H 0.09 1.31 8.03 -2.39 -0.02 1.29 16 45 H 0.05 0.75 7.71 -2.39 -0.02 0.74 16 46 H 0.12 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.13 1.50 8.06 -2.91 -0.02 1.47 16 48 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 49 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 50 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 51 H 0.09 1.71 7.86 -2.39 -0.02 1.69 16 52 H 0.05 0.99 7.74 -2.39 -0.02 0.97 16 Total: -1.00 -64.02 402.62 0.07 -63.95 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.10 Total: 21.03 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 4.96 Total: -39.74 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -7.02 Total: -92.01 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.02 0.07 -63.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.920 kcal (2) G-P(sol) polarization free energy of solvation -64.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds