Wall clock time and date at job start Tue Mar 31 2020 10:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99633 * 0.54561 * 6 5 4 8 8 C 1.50699 * 119.99976 * 179.72370 * 7 6 5 9 9 C 1.53003 * 109.47411 * 269.98186 * 8 7 6 10 10 N 1.46896 * 109.46955 * 179.97438 * 9 8 7 11 11 C 1.46951 * 111.00463 * 293.79817 * 10 9 8 12 12 C 1.53054 * 109.36536 * 176.81235 * 11 10 9 13 13 N 1.46958 * 109.36320 * 58.40492 * 12 11 10 14 14 C 1.46896 * 110.99625 * 176.80884 * 13 12 11 15 15 C 1.50696 * 109.47511 * 293.79698 * 14 13 12 16 16 H 1.08002 * 119.99908 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00476 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99338 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00453 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47136 * 90.00118 * 19 17 15 21 21 H 1.48496 * 109.47263 * 210.00273 * 19 17 15 22 22 H 1.48505 * 109.46838 * 330.00141 * 19 17 15 23 23 C 1.46951 * 110.87760 * 300.67791 * 13 12 11 24 24 C 1.46962 * 110.99960 * 170.00018 * 10 9 8 25 25 C 1.38237 * 120.00237 * 359.70804 * 7 6 5 26 26 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.00082 * 180.27375 * 6 5 4 36 36 H 1.09001 * 109.47028 * 29.98296 * 8 7 6 37 37 H 1.09003 * 109.47164 * 149.97780 * 8 7 6 38 38 H 1.09001 * 109.47115 * 300.00058 * 9 8 7 39 39 H 1.08998 * 109.46847 * 59.99830 * 9 8 7 40 40 H 1.09002 * 109.49005 * 296.78343 * 11 10 9 41 41 H 1.09008 * 109.48694 * 56.84568 * 11 10 9 42 42 H 1.08995 * 109.49177 * 298.43262 * 12 11 10 43 43 H 1.09006 * 109.48778 * 178.37210 * 12 11 10 44 44 H 1.09001 * 109.47397 * 53.79861 * 14 13 12 45 45 H 1.09000 * 109.47072 * 173.79647 * 14 13 12 46 46 H 0.97007 * 119.99752 * 179.97438 * 18 17 15 47 47 H 1.09002 * 109.49005 * 299.35228 * 23 13 12 48 48 H 1.09002 * 109.50620 * 179.30153 * 23 13 12 49 49 H 1.09006 * 109.48941 * 303.15866 * 24 10 9 50 50 H 1.08995 * 109.48963 * 63.21887 * 24 10 9 51 51 H 1.07997 * 119.99822 * 179.97438 * 25 7 6 52 52 H 1.07991 * 120.00142 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9532 -2.0140 -3.4879 8 6 3.4551 -2.7247 -4.7184 9 6 2.4472 -3.7980 -5.1343 10 7 2.9362 -4.4903 -6.3341 11 6 2.9713 -3.5820 -7.4888 12 6 3.5596 -4.3174 -8.6953 13 7 2.7442 -5.5047 -8.9873 14 6 3.2332 -6.1969 -10.1871 15 6 3.0261 -5.3182 -11.3937 16 1 2.5766 -4.3427 -11.2805 17 6 3.4106 -5.7594 -12.6421 18 7 3.9576 -6.9474 -12.7799 19 14 3.1545 -4.6698 -14.1376 20 1 4.3547 -3.8196 -14.3419 21 1 2.9389 -5.5183 -15.3371 22 1 1.9662 -3.8054 -13.9226 23 6 2.7091 -6.4129 -7.8326 24 6 2.1209 -5.6776 -6.6262 25 6 3.2875 -2.4861 -2.2324 26 6 2.8271 -1.8343 -1.1037 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.0688 0.6339 -2.5850 35 1 1.8978 -0.5209 -4.5956 36 1 3.5760 -2.0061 -5.5291 37 1 4.4154 -3.1926 -4.5014 38 1 2.3263 -4.5166 -4.3236 39 1 1.4870 -3.3301 -5.3512 40 1 1.9592 -3.2515 -7.7224 41 1 3.5911 -2.7171 -7.2524 42 1 4.5813 -4.6240 -8.4715 43 1 3.5598 -3.6545 -9.5606 44 1 4.2954 -6.4140 -10.0738 45 1 2.6838 -7.1292 -10.3180 46 1 4.2277 -7.2581 -13.6583 47 1 3.7213 -6.7434 -7.5991 48 1 2.0895 -7.2781 -8.0688 49 1 2.1207 -6.3405 -5.7609 50 1 1.0992 -5.3710 -6.8499 51 1 3.9079 -3.3646 -2.1334 52 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602748902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:15 Heat of formation + Delta-G solvation = 12.746911 kcal Electronic energy + Delta-G solvation = -25771.651721 eV Core-core repulsion = 22348.836505 eV Total energy + Delta-G solvation = -3422.815216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96540 -38.74449 -36.37107 -35.08750 -32.77751 -31.84414 -31.09377 -30.39864 -28.79608 -27.51137 -27.02184 -24.96616 -23.34226 -23.11113 -22.73381 -21.52669 -21.00998 -20.08403 -19.13862 -16.71315 -16.30003 -16.06075 -15.70997 -15.17967 -14.79836 -14.55321 -14.39753 -14.22104 -14.12673 -13.93071 -13.83237 -13.70734 -13.49358 -13.20145 -12.82992 -12.80451 -12.51823 -12.08468 -11.98986 -11.83090 -11.64258 -11.62649 -11.40249 -11.20968 -11.04151 -10.89384 -10.86373 -10.78433 -10.66909 -10.56925 -10.30356 -10.23410 -9.68968 -9.15514 -9.08218 -8.65820 -8.42488 -8.09923 -7.19642 -6.01093 -4.02421 1.15528 1.24092 3.32474 3.38602 3.42897 3.54493 4.08844 4.34410 4.43662 4.45013 4.75414 4.82876 4.83824 4.86031 4.97602 5.05712 5.08617 5.21233 5.24783 5.27950 5.32866 5.34496 5.41830 5.45490 5.52490 5.54091 5.60658 5.62801 5.72589 5.81800 5.83225 5.85795 5.86485 5.89545 5.93045 5.99921 6.04236 6.14364 6.25120 6.27372 6.43486 6.47078 6.52862 6.63297 6.71639 6.84861 7.22402 7.28573 7.38191 7.41358 7.81994 8.11582 8.23767 8.57805 9.05102 9.61648 11.09757 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.001982 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.436481 B =14121.354758 C =14653.301201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.079 4.079 9 C 0.064 3.936 10 N -0.540 5.540 11 C 0.056 3.944 12 C 0.067 3.933 13 N -0.539 5.539 14 C 0.193 3.807 15 C -0.507 4.507 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.057 3.943 24 C 0.062 3.938 25 C -0.113 4.113 26 C -0.117 4.117 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.085 0.915 44 H -0.008 1.008 45 H 0.030 0.970 46 H 0.261 0.739 47 H 0.030 0.970 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.038 0.962 51 H 0.122 0.878 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 12.950 26.464 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.131 4.131 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.116 4.116 9 C -0.064 4.064 10 N -0.265 5.265 11 C -0.072 4.072 12 C -0.061 4.061 13 N -0.264 5.264 14 C 0.068 3.932 15 C -0.545 4.545 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.072 4.072 24 C -0.066 4.066 25 C -0.131 4.131 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.104 0.896 44 H 0.009 0.991 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.056 0.944 51 H 0.140 0.860 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.872 12.811 26.307 29.516 hybrid contribution -0.074 0.412 -0.913 1.004 sum -3.945 13.224 25.394 28.901 Atomic orbital electron populations 1.21860 0.94371 1.02055 1.01877 1.20118 0.95934 0.96016 0.95439 1.21856 1.01242 0.95159 1.01875 1.19819 0.98110 0.95977 0.94566 1.20930 1.00257 1.00012 0.91935 1.21074 0.97833 0.95693 0.98599 1.19917 0.97542 0.95582 0.94900 1.20627 0.99378 0.97226 0.94418 1.22007 0.95614 0.95653 0.93113 1.62168 1.52685 1.07834 1.03852 1.22296 0.99849 0.94894 0.90197 1.21989 0.94309 0.93855 0.95981 1.62276 1.53141 1.07239 1.03762 1.19703 0.93446 0.94311 0.85745 1.21155 1.39550 1.02617 0.91200 0.91954 1.24997 0.95378 0.95239 0.99062 1.69968 1.42044 1.18145 1.23640 0.86502 0.78496 0.80288 0.82154 1.20741 1.21276 1.19823 1.22059 0.99133 0.95475 0.90582 1.22139 0.95040 0.91766 0.97653 1.21063 1.00267 0.99866 0.91905 1.21023 0.98379 0.95674 0.98464 0.92514 0.92474 0.92428 0.90630 0.92442 0.92474 0.92543 0.86375 0.86156 0.90795 0.90165 0.91115 0.95011 0.94440 0.91047 0.95349 0.89645 0.99068 0.95234 0.92958 0.95160 0.91069 0.91289 0.94393 0.86025 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.00 37.16 0.33 -0.56 16 2 C -0.06 -0.38 3.09 -91.77 -0.28 -0.66 16 3 C -0.14 -0.87 9.01 37.16 0.33 -0.53 16 4 C -0.08 -0.73 4.78 -104.62 -0.50 -1.23 16 5 C -0.11 -1.02 8.71 -39.58 -0.34 -1.36 16 6 C -0.11 -1.13 9.70 -39.58 -0.38 -1.51 16 7 C -0.08 -0.81 5.13 -104.62 -0.54 -1.35 16 8 C -0.08 -0.85 5.28 -27.88 -0.15 -1.00 16 9 C 0.06 0.78 4.94 -3.82 -0.02 0.76 16 10 N -0.54 -8.10 4.71 -234.46 -1.10 -9.20 16 11 C 0.06 0.89 5.41 -3.77 -0.02 0.87 16 12 C 0.07 1.35 5.43 -3.76 -0.02 1.33 16 13 N -0.54 -11.94 4.70 -235.92 -1.11 -13.05 16 14 C 0.19 5.13 4.72 -4.98 -0.02 5.10 16 15 C -0.51 -14.35 8.47 -34.44 -0.29 -14.64 16 16 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 19 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 24 C 0.06 0.97 5.61 -3.77 -0.02 0.94 16 25 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 26 C -0.12 -1.04 9.67 -39.58 -0.38 -1.42 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.36 7.37 -51.93 -0.38 -0.03 16 30 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 31 H 0.06 0.35 7.41 -51.93 -0.38 -0.04 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.12 0.89 7.10 -52.48 -0.37 0.52 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 37 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 39 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.01 6.34 -51.92 -0.33 0.68 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 44 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 45 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 49 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 50 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 52 H 0.12 0.84 7.95 -52.49 -0.42 0.42 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -30.32 403.77 -12.88 -43.19 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -9.65 Total: -3.36 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.81 Total: -14.22 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -1.48 Total: -48.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.32 -12.88 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602748902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.941 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds