Wall clock time and date at job start Tue Mar 31 2020 10:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99633 * 0.54561 * 6 5 4 8 8 C 1.50699 * 119.99976 * 179.72370 * 7 6 5 9 9 C 1.53003 * 109.47411 * 269.98186 * 8 7 6 10 10 N 1.46896 * 109.46955 * 179.97438 * 9 8 7 11 11 C 1.46951 * 111.00463 * 293.79817 * 10 9 8 12 12 C 1.53054 * 109.36536 * 176.81235 * 11 10 9 13 13 N 1.46958 * 109.36320 * 58.40492 * 12 11 10 14 14 C 1.46896 * 110.99625 * 176.80884 * 13 12 11 15 15 C 1.50696 * 109.47511 * 293.79698 * 14 13 12 16 16 H 1.08002 * 119.99908 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00476 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99338 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00453 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47136 * 90.00118 * 19 17 15 21 21 H 1.48496 * 109.47263 * 210.00273 * 19 17 15 22 22 H 1.48505 * 109.46838 * 330.00141 * 19 17 15 23 23 C 1.46951 * 110.87760 * 300.67791 * 13 12 11 24 24 C 1.46962 * 110.99960 * 170.00018 * 10 9 8 25 25 C 1.38237 * 120.00237 * 359.70804 * 7 6 5 26 26 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.00082 * 180.27375 * 6 5 4 36 36 H 1.09001 * 109.47028 * 29.98296 * 8 7 6 37 37 H 1.09003 * 109.47164 * 149.97780 * 8 7 6 38 38 H 1.09001 * 109.47115 * 300.00058 * 9 8 7 39 39 H 1.08998 * 109.46847 * 59.99830 * 9 8 7 40 40 H 1.09002 * 109.49005 * 296.78343 * 11 10 9 41 41 H 1.09008 * 109.48694 * 56.84568 * 11 10 9 42 42 H 1.08995 * 109.49177 * 298.43262 * 12 11 10 43 43 H 1.09006 * 109.48778 * 178.37210 * 12 11 10 44 44 H 1.09001 * 109.47397 * 53.79861 * 14 13 12 45 45 H 1.09000 * 109.47072 * 173.79647 * 14 13 12 46 46 H 0.97007 * 119.99752 * 179.97438 * 18 17 15 47 47 H 1.09002 * 109.49005 * 299.35228 * 23 13 12 48 48 H 1.09002 * 109.50620 * 179.30153 * 23 13 12 49 49 H 1.09006 * 109.48941 * 303.15866 * 24 10 9 50 50 H 1.08995 * 109.48963 * 63.21887 * 24 10 9 51 51 H 1.07997 * 119.99822 * 179.97438 * 25 7 6 52 52 H 1.07991 * 120.00142 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9532 -2.0140 -3.4879 8 6 3.4551 -2.7247 -4.7184 9 6 2.4472 -3.7980 -5.1343 10 7 2.9362 -4.4903 -6.3341 11 6 2.9713 -3.5820 -7.4888 12 6 3.5596 -4.3174 -8.6953 13 7 2.7442 -5.5047 -8.9873 14 6 3.2332 -6.1969 -10.1871 15 6 3.0261 -5.3182 -11.3937 16 1 2.5766 -4.3427 -11.2805 17 6 3.4106 -5.7594 -12.6421 18 7 3.9576 -6.9474 -12.7799 19 14 3.1545 -4.6698 -14.1376 20 1 4.3547 -3.8196 -14.3419 21 1 2.9389 -5.5183 -15.3371 22 1 1.9662 -3.8054 -13.9226 23 6 2.7091 -6.4129 -7.8326 24 6 2.1209 -5.6776 -6.6262 25 6 3.2875 -2.4861 -2.2324 26 6 2.8271 -1.8343 -1.1037 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.0688 0.6339 -2.5850 35 1 1.8978 -0.5209 -4.5956 36 1 3.5760 -2.0061 -5.5291 37 1 4.4154 -3.1926 -4.5014 38 1 2.3263 -4.5166 -4.3236 39 1 1.4870 -3.3301 -5.3512 40 1 1.9592 -3.2515 -7.7224 41 1 3.5911 -2.7171 -7.2524 42 1 4.5813 -4.6240 -8.4715 43 1 3.5598 -3.6545 -9.5606 44 1 4.2954 -6.4140 -10.0738 45 1 2.6838 -7.1292 -10.3180 46 1 4.2277 -7.2581 -13.6583 47 1 3.7213 -6.7434 -7.5991 48 1 2.0895 -7.2781 -8.0688 49 1 2.1207 -6.3405 -5.7609 50 1 1.0992 -5.3710 -6.8499 51 1 3.9079 -3.3646 -2.1334 52 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602748902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:14 Heat of formation + Delta-G solvation = -3.684377 kcal Electronic energy + Delta-G solvation = -25772.364235 eV Core-core repulsion = 22348.836505 eV Total energy + Delta-G solvation = -3423.527730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70568 -40.07743 -37.36110 -36.27091 -34.66289 -32.98047 -31.83098 -31.77457 -30.16704 -28.45709 -27.96665 -26.47266 -24.70431 -24.13378 -23.62596 -23.11628 -22.00945 -20.71298 -20.62930 -18.49385 -17.53838 -17.12819 -16.67399 -16.41845 -15.91832 -15.87181 -15.83887 -15.46554 -15.29000 -15.06989 -14.75477 -14.44141 -14.41455 -14.29954 -14.05583 -13.82965 -13.58292 -13.38170 -13.07022 -13.06092 -12.70494 -12.68769 -12.57084 -12.50631 -12.25773 -12.21751 -12.11716 -12.01000 -11.92812 -11.70404 -11.50962 -11.47516 -11.33078 -11.16176 -10.62679 -9.77096 -9.40596 -9.28760 -9.03436 -8.21315 -6.31879 0.45818 0.55266 1.40549 1.42226 1.53868 2.39722 2.79065 2.99106 3.10708 3.29642 3.77330 3.86882 3.94658 4.01059 4.12467 4.16460 4.20146 4.22558 4.33407 4.34932 4.38312 4.46230 4.54514 4.57016 4.61127 4.64953 4.67882 4.71828 4.81792 4.84167 4.95909 4.97275 4.99711 5.00654 5.03851 5.04805 5.08378 5.17480 5.21716 5.24417 5.27504 5.31489 5.37221 5.39686 5.59560 5.62974 5.78793 5.80210 6.00406 6.06545 6.11455 6.18094 6.34617 6.61749 6.83814 7.37823 8.89922 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.001982 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.436481 B =14121.354758 C =14653.301201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.091 4.091 8 C -0.070 4.070 9 C 0.071 3.929 10 N -0.547 5.547 11 C 0.069 3.931 12 C 0.069 3.931 13 N -0.546 5.546 14 C 0.208 3.792 15 C -0.524 4.524 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.265 1.265 23 C 0.054 3.946 24 C 0.071 3.929 25 C -0.121 4.121 26 C -0.125 4.125 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.095 0.905 42 H 0.016 0.984 43 H 0.068 0.932 44 H -0.040 1.040 45 H 0.004 0.996 46 H 0.265 0.735 47 H 0.021 0.979 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.036 0.964 51 H 0.130 0.870 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 14.694 28.027 31.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.092 4.092 8 C -0.108 4.108 9 C -0.057 4.057 10 N -0.272 5.272 11 C -0.059 4.059 12 C -0.060 4.060 13 N -0.271 5.271 14 C 0.082 3.918 15 C -0.562 4.562 16 H 0.081 0.919 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.189 1.189 23 C -0.074 4.074 24 C -0.057 4.057 25 C -0.139 4.139 26 C -0.143 4.143 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.113 0.887 42 H 0.034 0.966 43 H 0.086 0.914 44 H -0.023 1.023 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.089 0.911 49 H 0.116 0.884 50 H 0.054 0.946 51 H 0.148 0.852 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.658 14.567 27.903 31.819 hybrid contribution 0.178 -0.153 -1.308 1.329 sum -4.479 14.414 26.596 30.580 Atomic orbital electron populations 1.21848 0.93936 1.01816 1.02417 1.20164 0.96247 0.96250 0.94811 1.21843 1.00899 0.94809 1.02421 1.20096 0.97556 0.95855 0.95181 1.21119 1.00378 1.00391 0.91944 1.21221 0.98062 0.95872 0.99184 1.19890 0.98384 0.96065 0.94852 1.20510 0.98846 0.96697 0.94711 1.22020 0.95831 0.96020 0.91807 1.62159 1.53036 1.07766 1.04247 1.22136 0.99715 0.95089 0.89003 1.21982 0.93770 0.92927 0.97305 1.62217 1.53057 1.08089 1.03720 1.19360 0.91095 0.93564 0.87824 1.21439 1.39749 1.02831 0.92169 0.91912 1.25953 0.94765 0.96665 1.02408 1.70099 1.42791 1.19959 1.24629 0.85343 0.78867 0.78353 0.77812 1.19713 1.20693 1.18899 1.22160 0.98986 0.95561 0.90735 1.22064 0.94446 0.92269 0.96921 1.21237 1.00416 1.00286 0.91929 1.21283 0.98226 0.95713 0.99077 0.93125 0.91253 0.92612 0.89920 0.92605 0.91259 0.93056 0.85246 0.85806 0.91041 0.90366 0.90052 0.95066 0.94754 0.88691 0.96618 0.91351 1.02270 0.97800 0.92668 0.96038 0.91086 0.88430 0.94569 0.85199 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.00 71.98 0.65 -0.84 16 2 C -0.06 -0.64 3.09 -11.54 -0.04 -0.68 16 3 C -0.14 -1.44 9.01 71.98 0.65 -0.79 16 4 C -0.09 -1.34 4.78 -19.87 -0.09 -1.43 16 5 C -0.12 -1.99 8.71 22.27 0.19 -1.79 16 6 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 7 C -0.09 -1.74 5.13 -19.87 -0.10 -1.84 16 8 C -0.07 -1.40 5.28 29.85 0.16 -1.24 16 9 C 0.07 1.57 4.94 86.30 0.43 2.00 16 10 N -0.55 -15.53 4.71 -895.71 -4.22 -19.75 16 11 C 0.07 2.14 5.41 86.31 0.47 2.60 16 12 C 0.07 2.79 5.43 86.31 0.47 3.26 16 13 N -0.55 -24.80 4.70 -900.31 -4.23 -29.03 16 14 C 0.21 11.54 4.72 85.56 0.40 11.94 16 15 C -0.52 -30.38 8.47 25.60 0.22 -30.16 16 16 H 0.06 3.56 7.13 -2.91 -0.02 3.54 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 19 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 23 C 0.05 2.05 5.61 86.31 0.48 2.54 16 24 C 0.07 2.11 5.61 86.31 0.48 2.59 16 25 C -0.12 -2.11 9.70 22.27 0.22 -1.90 16 26 C -0.13 -1.98 9.67 22.27 0.22 -1.77 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.60 7.37 -2.39 -0.02 0.58 16 30 H 0.08 0.83 7.88 -2.39 -0.02 0.81 16 31 H 0.05 0.58 7.41 -2.39 -0.02 0.56 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.13 1.75 7.10 -2.91 -0.02 1.73 16 35 H 0.12 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.07 1.45 6.44 -2.39 -0.02 1.43 16 37 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 38 H 0.08 1.67 8.03 -2.39 -0.02 1.65 16 39 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 2.52 6.34 -2.38 -0.02 2.51 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 2.97 6.79 -2.38 -0.02 2.95 16 44 H -0.04 -2.45 8.12 -2.39 -0.02 -2.46 16 45 H 0.00 0.23 8.03 -2.39 -0.02 0.21 16 46 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 49 H 0.10 2.37 8.07 -2.38 -0.02 2.35 16 50 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 52 H 0.13 1.61 7.95 -2.92 -0.02 1.58 16 Total: -1.00 -65.96 403.77 0.18 -65.77 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.85 Total: 12.22 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 5.48 Total: -19.14 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -8.17 Total: -105.70 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.96 0.18 -65.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602748902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.087 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds