Wall clock time and date at job start Tue Mar 31 2020 11:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.47098 * 2 1 4 4 C 1.46896 * 111.00058 * 295.94284 * 3 2 1 5 5 C 1.50704 * 109.47256 * 287.64137 * 4 3 2 6 6 C 1.38236 * 119.99693 * 97.01447 * 5 4 3 7 7 C 1.38229 * 119.99862 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.00036 * 0.02562 * 7 6 5 9 9 C 1.50708 * 120.00260 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.46956 * 89.99926 * 9 8 7 11 11 C 1.46893 * 111.00087 * 66.04735 * 10 9 8 12 12 C 1.46901 * 111.00029 * 190.00312 * 10 9 8 13 13 C 1.38233 * 120.00234 * 0.25483 * 8 7 6 14 14 C 1.38229 * 120.00092 * 276.99309 * 5 4 3 15 15 C 1.46897 * 110.99882 * 59.89818 * 3 2 1 16 16 C 1.53004 * 109.46885 * 64.39707 * 15 3 2 17 17 C 1.50703 * 115.55067 * 69.09928 * 16 15 3 18 18 H 1.07992 * 119.99908 * 157.56830 * 17 16 15 19 19 C 1.37878 * 119.99508 * 337.55906 * 17 16 15 20 20 N 1.31510 * 120.00120 * 33.44647 * 19 17 16 21 21 Si 1.86800 * 119.99796 * 213.43166 * 19 17 16 22 22 H 1.48502 * 109.46619 * 90.01063 * 21 19 17 23 23 H 1.48502 * 109.47215 * 210.00232 * 21 19 17 24 24 H 1.48493 * 109.47344 * 330.00834 * 21 19 17 25 25 C 1.53000 * 117.50044 * 283.41821 * 16 15 3 26 26 C 1.53007 * 117.49643 * 214.76163 * 16 15 3 27 27 H 1.08998 * 109.47623 * 56.49397 * 1 2 3 28 28 H 1.09000 * 109.47355 * 176.49910 * 1 2 3 29 29 H 1.08997 * 109.47135 * 296.49282 * 1 2 3 30 30 H 1.09000 * 109.47085 * 240.00079 * 2 1 3 31 31 H 1.09003 * 109.47220 * 120.00583 * 2 1 3 32 32 H 1.08994 * 109.47190 * 167.64343 * 4 3 2 33 33 H 1.08995 * 109.47071 * 47.64044 * 4 3 2 34 34 H 1.08002 * 120.00433 * 359.97438 * 6 5 4 35 35 H 1.08005 * 120.00407 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47286 * 210.00078 * 9 8 7 37 37 H 1.09001 * 109.46823 * 330.00201 * 9 8 7 38 38 H 1.09006 * 109.47359 * 60.00014 * 11 10 9 39 39 H 1.08994 * 109.47523 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.47670 * 300.00385 * 11 10 9 41 41 H 1.09003 * 109.47314 * 59.99931 * 12 10 9 42 42 H 1.08997 * 109.47277 * 179.97438 * 12 10 9 43 43 H 1.08997 * 109.46738 * 300.00107 * 12 10 9 44 44 H 1.07997 * 120.00347 * 179.72833 * 13 8 7 45 45 H 1.08004 * 120.00096 * 0.02562 * 14 5 4 46 46 H 1.08999 * 109.47315 * 184.39220 * 15 3 2 47 47 H 1.09000 * 109.47286 * 304.40180 * 15 3 2 48 48 H 0.97004 * 120.00363 * 183.34816 * 20 19 17 49 49 H 1.08996 * 117.49832 * 0.02562 * 25 16 15 50 50 H 1.09006 * 117.49589 * 145.02027 * 25 16 15 51 51 H 1.09000 * 117.49659 * 214.98009 * 26 16 15 52 52 H 1.08999 * 117.49735 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6294 2.0813 -1.2332 5 6 2.4463 1.5571 -2.3861 6 6 1.9267 0.5786 -3.2128 7 6 2.6757 0.0982 -4.2705 8 6 3.9445 0.5957 -4.5013 9 6 4.7614 0.0715 -5.6542 10 7 4.4935 0.8795 -6.8514 11 6 4.9777 2.2553 -6.6772 12 6 5.0831 0.2613 -8.0465 13 6 4.4664 1.5701 -3.6711 14 6 3.7149 2.0550 -2.6171 15 6 1.5466 2.1106 1.1865 16 6 2.1439 1.4760 2.4441 17 6 3.6285 1.6625 2.6239 18 1 4.0675 1.5826 3.6073 19 6 4.4261 1.9349 1.5328 20 7 3.9549 2.6525 0.5365 21 14 6.1763 1.2850 1.4698 22 1 6.1841 -0.0542 0.8282 23 1 7.0222 2.2165 0.6811 24 1 6.7138 1.1760 2.8497 25 6 1.5332 0.1598 2.9294 26 6 1.2768 1.4546 3.7045 27 1 -0.3634 0.5673 -0.8569 28 1 -0.3634 -1.0257 -0.0628 29 1 -0.3633 0.4584 0.9197 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8073 3.1505 -1.1185 33 1 0.5714 1.9079 -1.4291 34 1 0.9355 0.1895 -3.0323 35 1 2.2699 -0.6666 -4.9162 36 1 5.8210 0.1309 -5.4054 37 1 4.4913 -0.9665 -5.8484 38 1 6.0528 2.2423 -6.4977 39 1 4.7671 2.8315 -7.5781 40 1 4.4730 2.7132 -5.8264 41 1 4.6550 -0.7306 -8.1913 42 1 4.8695 0.8796 -8.9183 43 1 6.1620 0.1759 -7.9166 44 1 5.4595 1.9557 -3.8488 45 1 4.1210 2.8195 -1.9711 46 1 1.8579 3.1532 1.1228 47 1 0.4589 2.0583 1.2347 48 1 4.4988 2.8034 -0.2524 49 1 0.7062 -0.2543 2.3526 50 1 2.2053 -0.5713 3.3791 51 1 1.7802 1.5749 4.6638 52 1 0.2811 1.8930 3.6379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602916968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:25 Heat of formation + Delta-G solvation = 94.886052 kcal Electronic energy + Delta-G solvation = -27965.117973 eV Core-core repulsion = 24545.864577 eV Total energy + Delta-G solvation = -3419.253395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.44432 -38.09924 -36.93386 -34.93751 -32.21751 -31.75648 -30.50156 -29.45056 -27.69018 -27.60064 -25.55010 -24.83789 -24.08010 -22.31674 -21.99278 -21.12962 -20.58085 -19.63316 -18.51102 -16.18405 -15.96976 -15.59842 -15.52619 -15.06930 -14.83805 -14.58893 -14.53560 -14.06060 -13.98583 -13.74271 -13.03732 -12.91070 -12.67140 -12.53893 -12.38471 -12.25978 -11.96881 -11.81438 -11.70142 -11.62775 -11.43175 -11.29146 -10.89715 -10.84928 -10.74598 -10.49321 -10.40497 -10.37863 -10.22528 -10.13959 -9.88607 -9.30895 -8.64629 -8.57077 -8.53032 -8.38367 -8.05950 -7.95258 -6.66530 -5.97141 -3.72392 1.74271 1.90857 3.42317 3.49856 3.55888 3.84483 4.33431 4.60256 4.86941 4.93296 5.00012 5.10816 5.21932 5.33496 5.37046 5.41801 5.46074 5.51535 5.56356 5.62742 5.65530 5.66636 5.76068 5.88338 5.89723 5.93761 5.98477 6.10022 6.16921 6.23600 6.28887 6.40550 6.51318 6.55871 6.58755 6.62703 6.71324 6.73246 6.81790 6.82970 6.85325 6.93265 6.95778 7.03264 7.06029 7.21166 7.29371 7.37679 7.49241 7.75596 8.06642 8.34874 8.45314 8.68709 9.13525 9.75706 11.04402 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.004089 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.557477 B = 6846.722560 C = 7902.406772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.036 3.964 3 N -0.461 5.461 4 C 0.098 3.902 5 C -0.048 4.048 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.095 4.095 9 C 0.097 3.903 10 N -0.542 5.542 11 C 0.021 3.979 12 C 0.024 3.976 13 C -0.121 4.121 14 C -0.089 4.089 15 C 0.128 3.872 16 C 0.069 3.931 17 C -0.526 4.526 18 H 0.053 0.947 19 C 0.115 3.885 20 N -0.792 5.792 21 Si 0.850 3.150 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.279 1.279 25 C -0.229 4.229 26 C -0.218 4.218 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.022 0.978 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.023 0.977 44 H 0.110 0.890 45 H 0.134 0.866 46 H 0.088 0.912 47 H -0.013 1.013 48 H 0.255 0.745 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -2.319 -14.036 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.093 4.093 3 N -0.182 5.182 4 C -0.030 4.030 5 C -0.049 4.049 6 C -0.140 4.140 7 C -0.124 4.124 8 C -0.095 4.095 9 C -0.030 4.030 10 N -0.266 5.266 11 C -0.128 4.128 12 C -0.124 4.124 13 C -0.139 4.139 14 C -0.108 4.108 15 C 0.001 3.999 16 C 0.067 3.933 17 C -0.561 4.561 18 H 0.071 0.929 19 C -0.096 4.096 20 N -0.423 5.423 21 Si 0.677 3.323 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.204 1.204 25 C -0.267 4.267 26 C -0.256 4.256 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.128 0.872 45 H 0.151 0.849 46 H 0.107 0.893 47 H 0.004 0.996 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.893 -2.139 -14.282 14.564 hybrid contribution 0.960 -0.768 0.065 1.231 sum -0.934 -2.907 -14.216 14.541 Atomic orbital electron populations 1.22502 1.00552 1.00693 1.01378 1.22431 0.90885 0.93545 1.02441 1.62162 1.57064 0.99416 0.99557 1.20945 0.93757 0.99192 0.89075 1.19933 0.94969 0.95030 0.94957 1.21013 0.99730 0.97619 0.95684 1.20767 0.93889 1.00185 0.97577 1.19476 0.95337 0.98336 0.96372 1.21022 0.96862 0.96934 0.88139 1.62007 1.58955 1.02748 1.02851 1.22467 0.97710 0.89747 1.02834 1.22384 0.96887 1.00126 0.93008 1.20992 0.99449 0.97539 0.95969 1.21247 0.93655 1.00121 0.95752 1.21362 0.90858 0.99296 0.88351 1.18984 0.93281 0.92263 0.88729 1.20090 0.89224 1.52827 0.93938 0.92896 1.24496 0.96614 0.92784 0.95676 1.70313 1.36545 1.28793 1.06688 0.87316 0.87317 0.79948 0.77739 1.20722 1.21989 1.20443 1.23288 1.03685 0.92710 1.06985 1.22917 1.00312 1.03791 0.98601 0.93366 0.93609 0.92362 0.92658 0.89390 0.90131 0.95982 0.86985 0.86998 0.94270 0.90346 0.95831 0.91736 0.90399 0.91455 0.91449 0.95838 0.87239 0.84873 0.89345 0.99559 0.93297 0.91265 0.91022 0.90933 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 8.52 37.15 0.32 -2.88 16 2 C 0.04 0.69 5.32 -3.83 -0.02 0.67 16 3 N -0.46 -9.54 2.22 -236.08 -0.52 -10.07 16 4 C 0.10 1.81 4.49 -4.98 -0.02 1.78 16 5 C -0.05 -0.84 4.88 -104.62 -0.51 -1.35 16 6 C -0.12 -1.92 8.52 -39.59 -0.34 -2.26 16 7 C -0.11 -1.55 9.70 -39.59 -0.38 -1.93 16 8 C -0.09 -1.37 4.87 -104.62 -0.51 -1.88 16 9 C 0.10 1.19 5.12 -4.97 -0.03 1.17 16 10 N -0.54 -6.26 5.01 -252.72 -1.27 -7.53 16 11 C 0.02 0.22 9.15 60.06 0.55 0.77 16 12 C 0.02 0.22 9.57 60.07 0.57 0.79 16 13 C -0.12 -1.89 7.99 -39.58 -0.32 -2.21 16 14 C -0.09 -1.57 9.54 -39.58 -0.38 -1.95 16 15 C 0.13 2.84 3.66 -3.82 -0.01 2.83 16 16 C 0.07 1.63 1.93 -155.65 -0.30 1.33 16 17 C -0.53 -14.09 8.98 -34.44 -0.31 -14.40 16 18 H 0.05 1.48 8.00 -52.49 -0.42 1.06 16 19 C 0.12 2.98 4.97 -17.82 -0.09 2.90 16 20 N -0.79 -19.57 8.62 55.43 0.48 -19.09 16 21 Si 0.85 20.61 29.65 -169.99 -5.04 15.57 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 C -0.23 -4.99 7.79 -26.69 -0.21 -5.20 16 26 C -0.22 -4.78 9.91 -26.69 -0.26 -5.04 16 27 H 0.05 0.76 6.11 -51.93 -0.32 0.44 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.02 5.29 -51.93 -0.27 0.75 16 30 H 0.05 1.06 6.52 -51.93 -0.34 0.72 16 31 H 0.09 1.88 5.12 -51.93 -0.27 1.62 16 32 H 0.08 1.55 7.81 -51.93 -0.41 1.14 16 33 H 0.02 0.38 5.75 -51.93 -0.30 0.09 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.04 0.47 8.06 -51.93 -0.42 0.06 16 37 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 38 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 40 H 0.08 0.95 6.18 -51.93 -0.32 0.63 16 41 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 42 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 43 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.11 1.57 8.05 -52.49 -0.42 1.14 16 45 H 0.13 2.50 5.77 -52.48 -0.30 2.19 16 46 H 0.09 2.13 6.85 -51.93 -0.36 1.78 16 47 H -0.01 -0.28 6.07 -51.93 -0.32 -0.60 16 48 H 0.25 6.05 5.78 -40.82 -0.24 5.82 16 49 H 0.07 1.40 5.08 -51.93 -0.26 1.14 16 50 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 51 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 52 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -26.16 385.53 -11.61 -37.77 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.82 Total: 4.39 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -2.25 Total: -26.86 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -1.31 Total: -36.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.04 Total: 15.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -26.16 -11.61 -37.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602916968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.654 kcal (2) G-P(sol) polarization free energy of solvation -26.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds