Wall clock time and date at job start Tue Mar 31 2020 11:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.47098 * 2 1 4 4 C 1.46896 * 111.00058 * 295.94284 * 3 2 1 5 5 C 1.50704 * 109.47256 * 287.64137 * 4 3 2 6 6 C 1.38236 * 119.99693 * 97.01447 * 5 4 3 7 7 C 1.38229 * 119.99862 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.00036 * 0.02562 * 7 6 5 9 9 C 1.50708 * 120.00260 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.46956 * 89.99926 * 9 8 7 11 11 C 1.46893 * 111.00087 * 66.04735 * 10 9 8 12 12 C 1.46901 * 111.00029 * 190.00312 * 10 9 8 13 13 C 1.38233 * 120.00234 * 0.25483 * 8 7 6 14 14 C 1.38229 * 120.00092 * 276.99309 * 5 4 3 15 15 C 1.46897 * 110.99882 * 59.89818 * 3 2 1 16 16 C 1.53004 * 109.46885 * 64.39707 * 15 3 2 17 17 C 1.50703 * 115.55067 * 69.09928 * 16 15 3 18 18 H 1.07992 * 119.99908 * 157.56830 * 17 16 15 19 19 C 1.37878 * 119.99508 * 337.55906 * 17 16 15 20 20 N 1.31510 * 120.00120 * 33.44647 * 19 17 16 21 21 Si 1.86800 * 119.99796 * 213.43166 * 19 17 16 22 22 H 1.48502 * 109.46619 * 90.01063 * 21 19 17 23 23 H 1.48502 * 109.47215 * 210.00232 * 21 19 17 24 24 H 1.48493 * 109.47344 * 330.00834 * 21 19 17 25 25 C 1.53000 * 117.50044 * 283.41821 * 16 15 3 26 26 C 1.53007 * 117.49643 * 214.76163 * 16 15 3 27 27 H 1.08998 * 109.47623 * 56.49397 * 1 2 3 28 28 H 1.09000 * 109.47355 * 176.49910 * 1 2 3 29 29 H 1.08997 * 109.47135 * 296.49282 * 1 2 3 30 30 H 1.09000 * 109.47085 * 240.00079 * 2 1 3 31 31 H 1.09003 * 109.47220 * 120.00583 * 2 1 3 32 32 H 1.08994 * 109.47190 * 167.64343 * 4 3 2 33 33 H 1.08995 * 109.47071 * 47.64044 * 4 3 2 34 34 H 1.08002 * 120.00433 * 359.97438 * 6 5 4 35 35 H 1.08005 * 120.00407 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47286 * 210.00078 * 9 8 7 37 37 H 1.09001 * 109.46823 * 330.00201 * 9 8 7 38 38 H 1.09006 * 109.47359 * 60.00014 * 11 10 9 39 39 H 1.08994 * 109.47523 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.47670 * 300.00385 * 11 10 9 41 41 H 1.09003 * 109.47314 * 59.99931 * 12 10 9 42 42 H 1.08997 * 109.47277 * 179.97438 * 12 10 9 43 43 H 1.08997 * 109.46738 * 300.00107 * 12 10 9 44 44 H 1.07997 * 120.00347 * 179.72833 * 13 8 7 45 45 H 1.08004 * 120.00096 * 0.02562 * 14 5 4 46 46 H 1.08999 * 109.47315 * 184.39220 * 15 3 2 47 47 H 1.09000 * 109.47286 * 304.40180 * 15 3 2 48 48 H 0.97004 * 120.00363 * 183.34816 * 20 19 17 49 49 H 1.08996 * 117.49832 * 0.02562 * 25 16 15 50 50 H 1.09006 * 117.49589 * 145.02027 * 25 16 15 51 51 H 1.09000 * 117.49659 * 214.98009 * 26 16 15 52 52 H 1.08999 * 117.49735 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6294 2.0813 -1.2332 5 6 2.4463 1.5571 -2.3861 6 6 1.9267 0.5786 -3.2128 7 6 2.6757 0.0982 -4.2705 8 6 3.9445 0.5957 -4.5013 9 6 4.7614 0.0715 -5.6542 10 7 4.4935 0.8795 -6.8514 11 6 4.9777 2.2553 -6.6772 12 6 5.0831 0.2613 -8.0465 13 6 4.4664 1.5701 -3.6711 14 6 3.7149 2.0550 -2.6171 15 6 1.5466 2.1106 1.1865 16 6 2.1439 1.4760 2.4441 17 6 3.6285 1.6625 2.6239 18 1 4.0675 1.5826 3.6073 19 6 4.4261 1.9349 1.5328 20 7 3.9549 2.6525 0.5365 21 14 6.1763 1.2850 1.4698 22 1 6.1841 -0.0542 0.8282 23 1 7.0222 2.2165 0.6811 24 1 6.7138 1.1760 2.8497 25 6 1.5332 0.1598 2.9294 26 6 1.2768 1.4546 3.7045 27 1 -0.3634 0.5673 -0.8569 28 1 -0.3634 -1.0257 -0.0628 29 1 -0.3633 0.4584 0.9197 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8073 3.1505 -1.1185 33 1 0.5714 1.9079 -1.4291 34 1 0.9355 0.1895 -3.0323 35 1 2.2699 -0.6666 -4.9162 36 1 5.8210 0.1309 -5.4054 37 1 4.4913 -0.9665 -5.8484 38 1 6.0528 2.2423 -6.4977 39 1 4.7671 2.8315 -7.5781 40 1 4.4730 2.7132 -5.8264 41 1 4.6550 -0.7306 -8.1913 42 1 4.8695 0.8796 -8.9183 43 1 6.1620 0.1759 -7.9166 44 1 5.4595 1.9557 -3.8488 45 1 4.1210 2.8195 -1.9711 46 1 1.8579 3.1532 1.1228 47 1 0.4589 2.0583 1.2347 48 1 4.4988 2.8034 -0.2524 49 1 0.7062 -0.2543 2.3526 50 1 2.2053 -0.5713 3.3791 51 1 1.7802 1.5749 4.6638 52 1 0.2811 1.8930 3.6379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602916968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:25 Heat of formation + Delta-G solvation = 84.074553 kcal Electronic energy + Delta-G solvation = -27965.586795 eV Core-core repulsion = 24545.864577 eV Total energy + Delta-G solvation = -3419.722217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69701 -39.59148 -38.01485 -36.51193 -34.13934 -33.01603 -31.73567 -30.88653 -28.90176 -28.44042 -27.38041 -26.35454 -25.45222 -23.50588 -23.14086 -22.81095 -21.84876 -21.12017 -20.25183 -18.02494 -17.11533 -16.80595 -16.57855 -16.42713 -16.26397 -16.03950 -15.96132 -15.55263 -15.26089 -15.03953 -14.67979 -14.20255 -14.15829 -13.85517 -13.45083 -13.28892 -13.21888 -13.10569 -12.97071 -12.84412 -12.71457 -12.64358 -12.53554 -12.48494 -12.27367 -12.15931 -12.12016 -11.95902 -11.69369 -11.64198 -11.44507 -11.18716 -10.41929 -10.38125 -9.87996 -9.65445 -9.46530 -9.19893 -8.26153 -7.94920 -5.74652 0.52338 0.67128 1.43414 1.50495 1.55028 2.60137 2.79099 3.10828 3.29689 3.66378 3.87434 3.89888 3.99270 4.15969 4.25000 4.26812 4.33306 4.36880 4.40605 4.46628 4.50222 4.59275 4.60347 4.68360 4.71415 4.72266 4.76168 4.81122 4.84333 4.90011 4.92849 4.98687 5.01833 5.02150 5.04385 5.12235 5.19334 5.22185 5.29467 5.33047 5.48205 5.54905 5.62129 5.64437 5.75614 5.92539 5.98452 6.02054 6.06112 6.11754 6.27433 6.61557 6.80158 6.91243 7.14211 7.72621 9.04152 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.004089 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.557477 B = 6846.722560 C = 7902.406772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.039 3.961 3 N -0.480 5.480 4 C 0.107 3.893 5 C -0.065 4.065 6 C -0.122 4.122 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.100 3.900 10 N -0.553 5.553 11 C 0.021 3.979 12 C 0.024 3.976 13 C -0.125 4.125 14 C -0.109 4.109 15 C 0.142 3.858 16 C 0.044 3.956 17 C -0.559 4.559 18 H 0.027 0.973 19 C 0.094 3.906 20 N -0.783 5.783 21 Si 0.886 3.114 22 H -0.288 1.288 23 H -0.288 1.288 24 H -0.287 1.287 25 C -0.212 4.212 26 C -0.212 4.212 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.061 0.939 47 H -0.001 1.001 48 H 0.259 0.741 49 H 0.089 0.911 50 H 0.060 0.940 51 H 0.065 0.935 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 -3.635 -16.319 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.089 4.089 3 N -0.201 5.201 4 C -0.021 4.021 5 C -0.066 4.066 6 C -0.141 4.141 7 C -0.124 4.124 8 C -0.091 4.091 9 C -0.027 4.027 10 N -0.277 5.277 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.144 4.144 14 C -0.128 4.128 15 C 0.015 3.985 16 C 0.043 3.957 17 C -0.594 4.594 18 H 0.046 0.954 19 C -0.118 4.118 20 N -0.414 5.414 21 Si 0.714 3.286 22 H -0.215 1.215 23 H -0.214 1.214 24 H -0.213 1.213 25 C -0.249 4.249 26 C -0.250 4.250 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.057 0.943 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.017 0.983 48 H 0.071 0.929 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.824 -3.448 -16.576 17.165 hybrid contribution 1.293 -0.349 0.714 1.518 sum -1.531 -3.797 -15.863 16.382 Atomic orbital electron populations 1.22358 0.98119 1.02155 1.01320 1.22316 0.92855 0.92378 1.01380 1.62005 1.58148 1.00142 0.99826 1.20836 0.94722 0.97996 0.88546 1.19888 0.95028 0.96309 0.95371 1.21158 1.00433 0.96943 0.95524 1.21066 0.93713 1.00264 0.97315 1.19765 0.95560 0.97288 0.96530 1.21011 0.96384 0.97627 0.87699 1.62000 1.59620 1.02885 1.03239 1.22445 0.97664 0.89787 1.02771 1.22447 0.97093 1.00670 0.92153 1.21100 0.99714 0.97904 0.95682 1.21172 0.94399 1.00547 0.96633 1.21069 0.91250 0.97709 0.88469 1.19038 0.92238 0.94090 0.90366 1.20173 0.91321 1.54730 0.93130 0.95436 1.24757 0.98030 0.93136 0.95838 1.70329 1.36804 1.27760 1.06497 0.86763 0.85719 0.79168 0.76987 1.21518 1.21401 1.21326 1.23192 1.03525 0.91929 1.06290 1.22944 1.00749 1.03736 0.97547 0.92309 0.91513 0.93264 0.92445 0.91674 0.91900 0.94550 0.85548 0.84594 0.94278 0.88931 0.95509 0.90423 0.92142 0.90503 0.90401 0.95422 0.86476 0.86932 0.92035 0.98291 0.92885 0.89278 0.92149 0.91667 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.52 8.52 71.98 0.61 -4.90 16 2 C 0.04 1.46 5.32 86.30 0.46 1.92 16 3 N -0.48 -19.74 2.22 -900.82 -2.00 -21.74 16 4 C 0.11 3.88 4.49 85.56 0.38 4.27 16 5 C -0.07 -2.24 4.88 -19.87 -0.10 -2.33 16 6 C -0.12 -3.60 8.52 22.27 0.19 -3.41 16 7 C -0.11 -2.82 9.70 22.27 0.22 -2.60 16 8 C -0.09 -2.47 4.87 -19.86 -0.10 -2.56 16 9 C 0.10 2.19 5.12 85.56 0.44 2.63 16 10 N -0.55 -11.39 5.01 -953.47 -4.78 -16.17 16 11 C 0.02 0.43 9.15 127.69 1.17 1.60 16 12 C 0.02 0.36 9.57 127.69 1.22 1.58 16 13 C -0.13 -3.86 7.99 22.27 0.18 -3.68 16 14 C -0.11 -3.86 9.54 22.27 0.21 -3.64 16 15 C 0.14 6.31 3.66 86.30 0.32 6.63 16 16 C 0.04 2.10 1.93 -52.92 -0.10 1.99 16 17 C -0.56 -30.75 8.98 25.60 0.23 -30.52 16 18 H 0.03 1.60 8.00 -2.91 -0.02 1.58 16 19 C 0.09 4.98 4.97 84.66 0.42 5.40 16 20 N -0.78 -39.49 8.62 21.45 0.18 -39.30 16 21 Si 0.89 43.06 29.65 68.60 2.03 45.09 16 22 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 C -0.21 -9.11 7.79 30.62 0.24 -8.87 16 26 C -0.21 -9.17 9.91 30.62 0.30 -8.87 16 27 H 0.06 1.67 6.11 -2.39 -0.01 1.66 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.60 5.29 -2.39 -0.01 1.58 16 30 H 0.06 2.10 6.52 -2.39 -0.02 2.09 16 31 H 0.06 2.73 5.12 -2.39 -0.01 2.72 16 32 H 0.06 2.47 7.81 -2.39 -0.02 2.45 16 33 H 0.04 1.21 5.75 -2.39 -0.01 1.19 16 34 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.04 0.86 8.06 -2.39 -0.02 0.84 16 37 H 0.09 1.77 8.01 -2.39 -0.02 1.75 16 38 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 40 H 0.06 1.42 6.18 -2.39 -0.01 1.41 16 41 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 42 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 43 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.12 3.31 8.05 -2.91 -0.02 3.29 16 45 H 0.11 4.38 5.77 -2.91 -0.02 4.36 16 46 H 0.06 3.03 6.85 -2.39 -0.02 3.02 16 47 H 0.00 -0.02 6.07 -2.39 -0.01 -0.04 16 48 H 0.26 12.57 5.78 -92.70 -0.54 12.03 16 49 H 0.09 3.45 5.08 -2.39 -0.01 3.44 16 50 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 51 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 52 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -56.17 385.53 2.85 -53.32 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 1.12 Total: 24.17 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 6.29 Total: -45.37 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -6.59 Total: -77.21 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -56.17 2.85 -53.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602916968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.393 kcal (2) G-P(sol) polarization free energy of solvation -56.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds