Wall clock time and date at job start Tue Mar 31 2020 11:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47037 * 2 1 4 4 C 1.52998 * 109.46981 * 239.99723 * 2 1 3 5 5 C 1.50696 * 109.47028 * 119.99875 * 2 1 3 6 6 C 1.38236 * 120.00161 * 59.99973 * 5 2 1 7 7 C 1.38231 * 120.00411 * 180.02562 * 6 5 2 8 8 C 1.38239 * 119.99785 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00099 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47311 * 89.99651 * 9 8 7 11 11 C 1.46910 * 111.00021 * 180.02562 * 10 9 8 12 12 C 1.53041 * 109.45585 * 275.02718 * 11 10 9 13 13 C 1.53194 * 109.31066 * 178.60173 * 12 11 10 14 14 N 1.46921 * 108.76439 * 54.65537 * 13 12 11 15 15 C 1.36940 * 120.62960 * 126.36198 * 14 13 12 16 16 H 1.07996 * 120.00366 * 331.85887 * 15 14 13 17 17 C 1.38821 * 119.99960 * 151.85950 * 15 14 13 18 18 N 1.31611 * 119.99884 * 343.07009 * 17 15 14 19 19 Si 1.86793 * 120.00071 * 163.07315 * 17 15 14 20 20 H 1.48507 * 109.47028 * 59.99831 * 19 17 15 21 21 H 1.48500 * 109.47187 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47150 * 300.00116 * 19 17 15 23 23 C 1.46923 * 118.74047 * 306.38245 * 14 13 12 24 24 C 1.53042 * 109.45935 * 154.97598 * 11 10 9 25 25 C 1.38236 * 120.00080 * 0.25381 * 8 7 6 26 26 C 1.38231 * 120.00214 * 240.02207 * 5 2 1 27 27 H 1.08997 * 109.47246 * 300.00453 * 1 2 3 28 28 H 1.09005 * 109.46631 * 60.00732 * 1 2 3 29 29 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46981 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47292 * 299.99385 * 3 2 1 32 32 H 1.08997 * 109.47472 * 59.99686 * 3 2 1 33 33 H 1.08999 * 109.47260 * 299.99728 * 4 2 1 34 34 H 1.08996 * 109.47491 * 60.00724 * 4 2 1 35 35 H 1.09005 * 109.47061 * 180.02562 * 4 2 1 36 36 H 1.08009 * 120.00185 * 359.97438 * 6 5 2 37 37 H 1.08000 * 120.00503 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.47348 * 329.99838 * 9 8 7 39 39 H 1.09005 * 109.47586 * 209.99896 * 9 8 7 40 40 H 1.00902 * 111.00154 * 303.95427 * 10 9 8 41 41 H 1.08993 * 109.46176 * 34.99541 * 11 10 9 42 42 H 1.09002 * 109.50089 * 298.56875 * 12 11 10 43 43 H 1.09004 * 109.50020 * 58.66138 * 12 11 10 44 44 H 1.09000 * 109.59886 * 294.86934 * 13 12 11 45 45 H 1.09000 * 109.70309 * 174.50438 * 13 12 11 46 46 H 0.96998 * 120.00046 * 179.97438 * 18 17 15 47 47 H 1.08994 * 109.59070 * 293.82315 * 23 14 13 48 48 H 1.08997 * 109.70734 * 173.46389 * 23 14 13 49 49 H 1.09000 * 109.49508 * 301.33023 * 24 11 10 50 50 H 1.08996 * 109.49902 * 61.42995 * 24 11 10 51 51 H 1.07991 * 120.00381 * 179.73218 * 25 8 7 52 52 H 1.08003 * 119.99889 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4493 7 6 2.1587 -2.6853 2.5782 8 6 2.9525 -2.0132 3.4887 9 6 3.4539 -2.7232 4.7197 10 7 4.7482 -3.3538 4.4283 11 6 5.2685 -4.0576 5.6083 12 6 6.0241 -3.0690 6.4994 13 6 6.5351 -3.7987 7.7456 14 7 7.3312 -4.9584 7.3212 15 6 8.6081 -5.1349 7.7832 16 1 9.2034 -4.2791 8.0655 17 6 9.1375 -6.4138 7.8886 18 7 8.3391 -7.4599 7.8720 19 14 10.9831 -6.6500 8.0541 20 1 11.4624 -5.9611 9.2793 21 1 11.2900 -8.0998 8.1498 22 1 11.6640 -6.0767 6.8655 23 6 6.7313 -5.9248 6.3912 24 6 6.2178 -5.1712 5.1603 25 6 3.2818 -0.6881 3.2728 26 6 2.8267 -0.0385 2.1406 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.0771 -2.5587 0.7385 37 1 1.8974 -3.7192 2.7494 38 1 2.7357 -3.4878 5.0160 39 1 3.5742 -2.0043 5.5302 40 1 4.6770 -3.9772 3.6381 41 1 4.4393 -4.4903 6.1679 42 1 6.8683 -2.6544 5.9485 43 1 5.3537 -2.2634 6.7990 44 1 5.6891 -4.1358 8.3446 45 1 7.1563 -3.1258 8.3367 46 1 8.7090 -8.3536 7.9453 47 1 5.9013 -6.4352 6.8797 48 1 7.4807 -6.6551 6.0861 49 1 5.6853 -5.8621 4.5067 50 1 7.0602 -4.7367 4.6221 51 1 3.8983 -0.1617 3.9863 52 1 3.0870 0.9957 1.9701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:31 Heat of formation + Delta-G solvation = 25.041646 kcal Electronic energy + Delta-G solvation = -26192.345194 eV Core-core repulsion = 22770.063118 eV Total energy + Delta-G solvation = -3422.282076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09260 -38.12265 -36.84180 -34.86296 -32.38943 -31.19579 -30.80204 -29.79383 -28.71825 -27.65747 -27.55326 -25.54679 -24.10821 -22.47233 -22.24471 -21.64346 -21.07500 -19.37354 -19.02513 -16.93293 -16.54743 -15.74588 -15.21256 -14.94432 -14.81865 -14.60837 -14.45251 -14.16099 -13.87505 -13.73426 -13.53383 -13.44933 -13.09700 -12.92720 -12.76234 -12.34450 -12.28307 -12.16502 -12.01415 -11.93865 -11.62148 -11.52187 -11.32922 -11.22893 -11.00677 -10.76475 -10.73242 -10.67978 -10.58937 -10.30873 -10.16761 -9.90033 -9.56471 -9.44182 -8.95585 -8.62474 -8.43294 -8.11260 -6.63240 -5.75613 -3.17508 1.26337 1.37046 3.41018 3.46358 3.48305 3.64818 4.32088 4.45737 4.53089 4.55335 4.70126 4.85430 4.92058 4.95074 5.00893 5.22733 5.30116 5.34157 5.38053 5.40887 5.44487 5.47460 5.54042 5.55907 5.56318 5.62090 5.69290 5.71110 5.74932 5.78375 5.94258 5.97623 5.99338 6.00610 6.03816 6.19581 6.38317 6.38522 6.52934 6.54031 6.58090 6.62028 6.67528 6.71027 6.86323 6.95385 7.08436 7.38654 7.40459 7.64993 7.69588 7.83038 8.49030 9.25089 9.88785 10.45957 11.33152 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.002098 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.997151 B =13341.913581 C =13349.003554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.075 4.075 6 C -0.117 4.117 7 C -0.113 4.113 8 C -0.079 4.079 9 C 0.097 3.903 10 N -0.682 5.682 11 C 0.096 3.904 12 C -0.116 4.116 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.140 4.140 25 C -0.095 4.095 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.336 0.664 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.254 0.746 47 H 0.015 0.985 48 H 0.088 0.912 49 H 0.044 0.956 50 H 0.063 0.937 51 H 0.122 0.878 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 14.307 -15.944 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.132 4.132 8 C -0.079 4.079 9 C -0.032 4.032 10 N -0.313 5.313 11 C -0.013 4.013 12 C -0.156 4.156 13 C 0.018 3.982 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.549 5.549 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.048 3.952 24 C -0.180 4.180 25 C -0.114 4.114 26 C -0.141 4.141 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.106 0.894 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.140 0.860 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.169 14.689 -15.771 26.943 hybrid contribution 0.316 -1.046 0.120 1.099 sum -15.853 13.644 -15.651 26.123 Atomic orbital electron populations 1.21886 0.93835 1.02006 1.01756 1.19491 0.95569 0.95040 0.92875 1.21961 1.01328 0.94994 1.01818 1.21888 1.01401 1.00164 0.96097 1.19748 0.97957 0.94080 0.95744 1.20873 1.00723 0.94346 0.97556 1.21026 0.98193 0.99565 0.94390 1.19863 0.97174 0.94348 0.96541 1.20915 0.90233 0.97495 0.94536 1.60668 1.25083 1.37700 1.07848 1.21496 0.95952 0.93753 0.90092 1.22000 0.99136 0.96926 0.97537 1.20928 0.94141 0.90052 0.93116 1.44035 1.12801 1.24509 1.50093 1.19155 0.88594 0.91578 1.38655 0.91757 1.25046 0.98026 0.96075 1.00634 1.70018 1.33186 0.97740 1.54004 0.86363 0.85593 0.76645 0.78143 1.20899 1.21680 1.21022 1.20728 0.96766 0.91190 0.86562 1.22399 0.98475 0.96535 1.00598 1.21047 0.98681 0.94291 0.97370 1.21157 0.98433 1.00122 0.94379 0.92524 0.92476 0.92476 0.92172 0.92504 0.92273 0.92460 0.92482 0.92391 0.86511 0.86476 0.94820 0.90335 0.84578 0.94677 0.91777 0.93641 0.96822 0.92738 0.93636 0.96642 0.89358 0.93704 0.91838 0.86002 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.29 37.16 0.31 -0.62 16 2 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 3 C -0.14 -0.97 7.13 37.16 0.26 -0.70 16 4 C -0.14 -0.99 8.29 37.16 0.31 -0.68 16 5 C -0.08 -0.72 4.76 -104.63 -0.50 -1.22 16 6 C -0.12 -1.16 8.71 -39.58 -0.34 -1.50 16 7 C -0.11 -1.23 9.70 -39.58 -0.38 -1.62 16 8 C -0.08 -0.94 5.39 -104.63 -0.56 -1.50 16 9 C 0.10 1.25 5.61 -4.98 -0.03 1.22 16 10 N -0.68 -10.10 6.30 -107.94 -0.68 -10.78 16 11 C 0.10 1.66 2.46 -67.66 -0.17 1.50 16 12 C -0.12 -2.13 5.59 -26.61 -0.15 -2.28 16 13 C 0.14 3.12 6.52 -3.71 -0.02 3.10 16 14 N -0.59 -15.13 2.99 -172.33 -0.52 -15.65 16 15 C -0.25 -6.98 9.58 -15.05 -0.14 -7.13 16 16 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 18 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 19 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 24 C -0.14 -2.73 5.36 -26.61 -0.14 -2.87 16 25 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 26 C -0.12 -1.26 8.98 -39.58 -0.36 -1.61 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 30 H 0.06 0.42 7.52 -51.93 -0.39 0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 33 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.12 0.97 7.10 -52.48 -0.37 0.60 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.03 0.42 8.00 -51.93 -0.42 0.01 16 39 H 0.08 1.02 7.35 -51.93 -0.38 0.64 16 40 H 0.34 4.78 8.32 -39.29 -0.33 4.45 16 41 H 0.04 0.63 7.80 -51.93 -0.40 0.23 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.04 0.74 7.42 -51.93 -0.39 0.35 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 49 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 50 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 51 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 52 H 0.12 1.06 5.90 -52.48 -0.31 0.75 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -29.56 397.92 -11.64 -41.20 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.49 Total: 1.85 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.54 Total: -13.63 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.57 Total: -52.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.56 -11.64 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.243 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds