Wall clock time and date at job start Tue Mar 31 2020 11:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47037 * 2 1 4 4 C 1.52998 * 109.46981 * 239.99723 * 2 1 3 5 5 C 1.50696 * 109.47028 * 119.99875 * 2 1 3 6 6 C 1.38236 * 120.00161 * 59.99973 * 5 2 1 7 7 C 1.38231 * 120.00411 * 180.02562 * 6 5 2 8 8 C 1.38239 * 119.99785 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00099 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47311 * 89.99651 * 9 8 7 11 11 C 1.46910 * 111.00021 * 180.02562 * 10 9 8 12 12 C 1.53041 * 109.45585 * 275.02718 * 11 10 9 13 13 C 1.53194 * 109.31066 * 178.60173 * 12 11 10 14 14 N 1.46921 * 108.76439 * 54.65537 * 13 12 11 15 15 C 1.36940 * 120.62960 * 126.36198 * 14 13 12 16 16 H 1.07996 * 120.00366 * 331.85887 * 15 14 13 17 17 C 1.38821 * 119.99960 * 151.85950 * 15 14 13 18 18 N 1.31611 * 119.99884 * 343.07009 * 17 15 14 19 19 Si 1.86793 * 120.00071 * 163.07315 * 17 15 14 20 20 H 1.48507 * 109.47028 * 59.99831 * 19 17 15 21 21 H 1.48500 * 109.47187 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47150 * 300.00116 * 19 17 15 23 23 C 1.46923 * 118.74047 * 306.38245 * 14 13 12 24 24 C 1.53042 * 109.45935 * 154.97598 * 11 10 9 25 25 C 1.38236 * 120.00080 * 0.25381 * 8 7 6 26 26 C 1.38231 * 120.00214 * 240.02207 * 5 2 1 27 27 H 1.08997 * 109.47246 * 300.00453 * 1 2 3 28 28 H 1.09005 * 109.46631 * 60.00732 * 1 2 3 29 29 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46981 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47292 * 299.99385 * 3 2 1 32 32 H 1.08997 * 109.47472 * 59.99686 * 3 2 1 33 33 H 1.08999 * 109.47260 * 299.99728 * 4 2 1 34 34 H 1.08996 * 109.47491 * 60.00724 * 4 2 1 35 35 H 1.09005 * 109.47061 * 180.02562 * 4 2 1 36 36 H 1.08009 * 120.00185 * 359.97438 * 6 5 2 37 37 H 1.08000 * 120.00503 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.47348 * 329.99838 * 9 8 7 39 39 H 1.09005 * 109.47586 * 209.99896 * 9 8 7 40 40 H 1.00902 * 111.00154 * 303.95427 * 10 9 8 41 41 H 1.08993 * 109.46176 * 34.99541 * 11 10 9 42 42 H 1.09002 * 109.50089 * 298.56875 * 12 11 10 43 43 H 1.09004 * 109.50020 * 58.66138 * 12 11 10 44 44 H 1.09000 * 109.59886 * 294.86934 * 13 12 11 45 45 H 1.09000 * 109.70309 * 174.50438 * 13 12 11 46 46 H 0.96998 * 120.00046 * 179.97438 * 18 17 15 47 47 H 1.08994 * 109.59070 * 293.82315 * 23 14 13 48 48 H 1.08997 * 109.70734 * 173.46389 * 23 14 13 49 49 H 1.09000 * 109.49508 * 301.33023 * 24 11 10 50 50 H 1.08996 * 109.49902 * 61.42995 * 24 11 10 51 51 H 1.07991 * 120.00381 * 179.73218 * 25 8 7 52 52 H 1.08003 * 119.99889 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4493 7 6 2.1587 -2.6853 2.5782 8 6 2.9525 -2.0132 3.4887 9 6 3.4539 -2.7232 4.7197 10 7 4.7482 -3.3538 4.4283 11 6 5.2685 -4.0576 5.6083 12 6 6.0241 -3.0690 6.4994 13 6 6.5351 -3.7987 7.7456 14 7 7.3312 -4.9584 7.3212 15 6 8.6081 -5.1349 7.7832 16 1 9.2034 -4.2791 8.0655 17 6 9.1375 -6.4138 7.8886 18 7 8.3391 -7.4599 7.8720 19 14 10.9831 -6.6500 8.0541 20 1 11.4624 -5.9611 9.2793 21 1 11.2900 -8.0998 8.1498 22 1 11.6640 -6.0767 6.8655 23 6 6.7313 -5.9248 6.3912 24 6 6.2178 -5.1712 5.1603 25 6 3.2818 -0.6881 3.2728 26 6 2.8267 -0.0385 2.1406 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.0771 -2.5587 0.7385 37 1 1.8974 -3.7192 2.7494 38 1 2.7357 -3.4878 5.0160 39 1 3.5742 -2.0043 5.5302 40 1 4.6770 -3.9772 3.6381 41 1 4.4393 -4.4903 6.1679 42 1 6.8683 -2.6544 5.9485 43 1 5.3537 -2.2634 6.7990 44 1 5.6891 -4.1358 8.3446 45 1 7.1563 -3.1258 8.3367 46 1 8.7090 -8.3536 7.9453 47 1 5.9013 -6.4352 6.8797 48 1 7.4807 -6.6551 6.0861 49 1 5.6853 -5.8621 4.5067 50 1 7.0602 -4.7367 4.6221 51 1 3.8983 -0.1617 3.9863 52 1 3.0870 0.9957 1.9701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:29 Heat of formation + Delta-G solvation = 10.653808 kcal Electronic energy + Delta-G solvation = -26192.969098 eV Core-core repulsion = 22770.063118 eV Total energy + Delta-G solvation = -3422.905980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85320 -39.60950 -37.76336 -36.28044 -34.08580 -32.27792 -31.96485 -31.44820 -30.11962 -28.20561 -28.07405 -27.02513 -25.62351 -23.87398 -23.19796 -23.05092 -22.31512 -20.72559 -20.02350 -18.74601 -17.51900 -16.90038 -16.69085 -16.15194 -15.85331 -15.69948 -15.60432 -15.32417 -15.10464 -14.90985 -14.83257 -14.49643 -14.27212 -14.11363 -13.86255 -13.57788 -13.43460 -13.12679 -13.03000 -12.82440 -12.79351 -12.57287 -12.52465 -12.50306 -12.29044 -12.22743 -12.06365 -11.99059 -11.80754 -11.76520 -11.48150 -11.31359 -11.23897 -11.14363 -10.53765 -9.75675 -9.50678 -9.26734 -8.69072 -7.88060 -5.33343 0.45165 0.57163 1.46415 1.49132 1.55980 2.51300 2.80440 3.24745 3.40075 3.69338 3.69493 3.83766 3.92978 4.01505 4.11112 4.14949 4.17380 4.20623 4.42242 4.43953 4.48011 4.53512 4.60912 4.69379 4.70210 4.72769 4.80753 4.86479 4.88381 4.92365 4.97923 5.03269 5.03871 5.05740 5.08678 5.09403 5.19979 5.23688 5.24643 5.28681 5.39889 5.40394 5.46327 5.52107 5.62512 5.64345 5.71970 5.78784 5.80024 6.10383 6.19179 6.38967 6.47954 7.14415 7.85603 8.37723 9.18476 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.002098 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.997151 B =13341.913581 C =13349.003554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.075 4.075 6 C -0.122 4.122 7 C -0.120 4.120 8 C -0.093 4.093 9 C 0.102 3.898 10 N -0.680 5.680 11 C 0.107 3.893 12 C -0.103 4.103 13 C 0.141 3.859 14 N -0.611 5.611 15 C -0.264 4.264 16 H 0.065 0.935 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.180 3.820 24 C -0.126 4.126 25 C -0.108 4.108 26 C -0.130 4.130 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.342 0.658 41 H 0.033 0.967 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.012 0.988 45 H 0.054 0.946 46 H 0.250 0.750 47 H -0.004 1.004 48 H 0.055 0.945 49 H 0.066 0.934 50 H 0.053 0.947 51 H 0.122 0.878 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 15.805 -17.493 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.194 4.194 5 C -0.075 4.075 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.094 4.094 9 C -0.027 4.027 10 N -0.311 5.311 11 C -0.002 4.002 12 C -0.142 4.142 13 C 0.015 3.985 14 N -0.334 5.334 15 C -0.394 4.394 16 H 0.083 0.917 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.054 3.946 24 C -0.165 4.165 25 C -0.126 4.126 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.160 0.840 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.014 0.986 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.140 0.860 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.094 16.220 -17.330 29.251 hybrid contribution 0.524 -1.459 0.582 1.656 sum -16.570 14.760 -16.747 27.802 Atomic orbital electron populations 1.21872 0.93050 1.02206 1.02172 1.19552 0.96150 0.95307 0.92044 1.21959 1.01090 0.94566 1.02455 1.21881 1.00785 1.00361 0.96417 1.20050 0.97143 0.94121 0.96202 1.21102 1.00692 0.94624 0.97528 1.21187 0.98069 1.00066 0.94534 1.19801 0.98303 0.94646 0.96623 1.20888 0.89184 0.97416 0.95176 1.60580 1.26584 1.37190 1.06760 1.21242 0.95251 0.92855 0.90896 1.21811 0.99210 0.97291 0.95927 1.21071 0.93652 0.89034 0.94754 1.44315 1.12809 1.25579 1.50737 1.19481 0.89893 0.91761 1.38257 0.91730 1.25821 1.02170 0.95814 1.00929 1.70172 1.34823 0.97862 1.55302 0.85329 0.80482 0.76250 0.78325 1.20031 1.21903 1.20485 1.20536 0.95023 0.91044 0.88041 1.22154 0.98770 0.97210 0.98397 1.21171 0.99085 0.94386 0.97987 1.21367 0.98411 1.00865 0.94124 0.93001 0.91191 0.92408 0.92565 0.91317 0.92240 0.92424 0.91145 0.93333 0.84952 0.85673 0.94382 0.90458 0.83956 0.94885 0.92918 0.91036 0.96963 0.92727 0.94067 0.98620 0.92688 0.91507 0.92847 0.85978 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.29 71.98 0.60 -0.92 16 2 C -0.03 -0.40 0.85 -52.93 -0.05 -0.44 16 3 C -0.14 -1.63 7.13 71.98 0.51 -1.12 16 4 C -0.14 -1.67 8.29 71.98 0.60 -1.07 16 5 C -0.07 -1.31 4.76 -19.87 -0.09 -1.40 16 6 C -0.12 -2.19 8.71 22.27 0.19 -1.99 16 7 C -0.12 -2.42 9.70 22.27 0.22 -2.21 16 8 C -0.09 -2.09 5.39 -19.87 -0.11 -2.19 16 9 C 0.10 2.45 5.61 85.56 0.48 2.93 16 10 N -0.68 -18.99 6.30 -495.42 -3.12 -22.11 16 11 C 0.11 3.58 2.46 44.94 0.11 3.69 16 12 C -0.10 -3.65 5.59 30.67 0.17 -3.47 16 13 C 0.14 6.06 6.52 86.36 0.56 6.62 16 14 N -0.61 -31.72 2.99 -699.12 -2.09 -33.82 16 15 C -0.26 -14.93 9.58 84.04 0.81 -14.12 16 16 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 17 C -0.05 -2.97 4.92 84.87 0.42 -2.56 16 18 N -0.94 -56.28 11.19 21.65 0.24 -56.04 16 19 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C 0.18 8.91 5.30 86.36 0.46 9.37 16 24 C -0.13 -4.85 5.36 30.67 0.16 -4.68 16 25 C -0.11 -2.33 9.70 22.27 0.22 -2.11 16 26 C -0.13 -2.46 8.98 22.27 0.20 -2.26 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.63 7.39 -2.38 -0.02 0.62 16 30 H 0.06 0.68 7.52 -2.38 -0.02 0.66 16 31 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 33 H 0.06 0.69 7.39 -2.39 -0.02 0.67 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.13 1.90 7.10 -2.91 -0.02 1.88 16 37 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.04 0.89 8.00 -2.38 -0.02 0.87 16 39 H 0.08 1.87 7.35 -2.38 -0.02 1.85 16 40 H 0.34 9.08 8.32 -89.69 -0.75 8.34 16 41 H 0.03 1.14 7.80 -2.39 -0.02 1.12 16 42 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.07 2.18 7.42 -2.39 -0.02 2.16 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.05 3.07 6.06 -2.39 -0.01 3.06 16 49 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 50 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 52 H 0.14 2.13 5.90 -2.91 -0.02 2.11 16 Total: -1.00 -63.71 397.92 2.64 -61.07 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.12 Total: 21.12 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 5.45 Total: -17.94 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.97 Total: -111.97 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -63.71 2.64 -61.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.728 kcal (2) G-P(sol) polarization free energy of solvation -63.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds