Wall clock time and date at job start Tue Mar 31 2020 11:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46919 * 2 1 4 4 C 1.53004 * 109.47263 * 239.99851 * 2 1 3 5 5 C 1.50702 * 109.46651 * 59.99947 * 4 2 1 6 6 H 1.07997 * 120.00305 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99701 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00194 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00035 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47247 * 89.99715 * 9 7 5 11 11 H 1.48496 * 109.46939 * 209.99848 * 9 7 5 12 12 H 1.48504 * 109.46708 * 329.99423 * 9 7 5 13 13 C 1.52999 * 109.47226 * 119.99856 * 2 1 3 14 14 N 1.46897 * 109.47319 * 299.99892 * 13 2 1 15 15 C 1.46902 * 111.00380 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47152 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.47152 * 179.97438 * 16 15 14 18 18 C 1.46429 * 110.99863 * 48.68313 * 17 16 15 19 19 C 1.53376 * 108.67745 * 178.97730 * 18 17 16 20 20 C 1.53046 * 107.94511 * 291.85216 * 19 18 17 21 21 C 1.50805 * 109.66310 * 47.35664 * 20 19 18 22 22 C 1.38617 * 118.12644 * 164.37066 * 21 20 19 23 23 C 1.38050 * 120.48231 * 179.38502 * 22 21 20 24 24 C 1.38314 * 119.89017 * 0.22116 * 23 22 21 25 25 C 1.37810 * 119.95326 * 359.64232 * 24 23 22 26 26 C 1.38368 * 122.00403 * 344.01253 * 21 20 19 27 27 H 1.08996 * 109.46690 * 299.99760 * 1 2 3 28 28 H 1.08993 * 109.47281 * 60.00385 * 1 2 3 29 29 H 1.09004 * 109.46704 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46912 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47144 * 299.99930 * 3 2 1 32 32 H 1.08996 * 109.47693 * 60.00292 * 3 2 1 33 33 H 1.08996 * 109.46888 * 179.97438 * 4 2 1 34 34 H 1.08992 * 109.47030 * 299.99861 * 4 2 1 35 35 H 0.97000 * 119.99990 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.47081 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.47169 * 60.00420 * 13 2 1 38 38 H 1.00900 * 110.99619 * 56.04436 * 14 13 2 39 39 H 1.09001 * 109.46508 * 60.00131 * 15 14 13 40 40 H 1.09000 * 109.46641 * 300.00423 * 15 14 13 41 41 H 1.09001 * 109.47326 * 60.00608 * 16 15 14 42 42 H 1.08992 * 109.47452 * 300.00383 * 16 15 14 43 43 H 1.08994 * 109.60625 * 298.73947 * 18 17 16 44 44 H 1.09002 * 109.59863 * 59.06124 * 18 17 16 45 45 H 1.09002 * 109.76230 * 51.45956 * 19 18 17 46 46 H 1.08995 * 109.76447 * 172.18610 * 19 18 17 47 47 H 1.09003 * 109.43995 * 287.29444 * 20 19 18 48 48 H 1.09001 * 109.43734 * 167.41373 * 20 19 18 49 49 H 1.07997 * 119.75587 * 359.36184 * 22 21 20 50 50 H 1.08002 * 120.05217 * 179.97438 * 23 22 21 51 51 H 1.08002 * 120.02647 * 179.90083 * 24 23 22 52 52 H 1.07996 * 119.79013 * 180.27502 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 1.4324 0.1380 -4.8058 9 14 2.9452 -2.0004 -3.9034 10 1 2.0867 -3.2112 -3.9493 11 1 3.7375 -1.9075 -5.1558 12 1 3.8653 -2.0897 -2.7411 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0210 -0.6951 3.6704 16 6 1.4914 0.0527 4.8955 17 7 1.9615 -0.6140 6.1172 18 6 3.4013 -0.8725 6.0531 19 6 3.8385 -1.5440 7.3609 20 6 3.7046 -0.5157 8.4866 21 6 2.3622 0.1651 8.3949 22 6 1.9152 0.8793 9.4957 23 6 0.6992 1.5320 9.4603 24 6 -0.0830 1.4709 8.3212 25 6 0.3562 0.7652 7.2220 26 6 1.5833 0.1000 7.2531 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6768 -1.7489 -1.2492 35 1 1.6668 -0.1934 -5.6868 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7489 1.2492 38 1 0.5439 0.0414 2.4401 39 1 3.1109 -0.6953 3.6873 40 1 1.6571 -1.7225 3.6869 41 1 0.4016 0.0525 4.8784 42 1 1.8548 1.0802 4.8791 43 1 3.6174 -1.5326 5.2131 44 1 3.9364 0.0686 5.9257 45 1 3.1980 -2.4015 7.5670 46 1 4.8755 -1.8695 7.2794 47 1 4.4959 0.2283 8.3943 48 1 3.7912 -1.0189 9.4497 49 1 2.5224 0.9251 10.3876 50 1 0.3575 2.0861 10.3220 51 1 -1.0353 1.9794 8.2916 52 1 -0.2547 0.7229 6.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610270765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:28 Heat of formation + Delta-G solvation = 16.775692 kcal Electronic energy + Delta-G solvation = -26359.719396 eV Core-core repulsion = 22937.078882 eV Total energy + Delta-G solvation = -3422.640515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87530 -38.03601 -37.16422 -35.21631 -33.93568 -32.17990 -30.61927 -30.22663 -28.53333 -27.44673 -26.38829 -25.55539 -24.59427 -23.62486 -22.75351 -21.73347 -21.00221 -19.74942 -17.86460 -17.39566 -16.81261 -16.38772 -16.27390 -15.67443 -15.10898 -14.90572 -14.43329 -14.15900 -14.04227 -13.94800 -13.67371 -13.58697 -13.35701 -13.22080 -12.81970 -12.67393 -12.47102 -12.29523 -12.09273 -11.85503 -11.69204 -11.52651 -11.31979 -11.07338 -11.02347 -10.90797 -10.85209 -10.66797 -10.50030 -10.34917 -10.03868 -9.82093 -9.68221 -9.31201 -8.96264 -8.91147 -8.49983 -8.23736 -7.89185 -6.00216 -3.96397 1.15597 1.20019 3.25985 3.31617 3.39518 3.42818 3.64225 4.28896 4.41151 4.47122 4.47933 4.59639 4.66874 4.84717 4.86908 4.99902 5.04712 5.11239 5.17985 5.25246 5.32252 5.33047 5.41745 5.50068 5.52745 5.54485 5.59575 5.65880 5.73016 5.77382 5.83444 5.86421 5.88746 5.99380 6.12648 6.21533 6.23420 6.35712 6.39737 6.55829 6.57832 6.66917 6.78815 6.79423 7.05440 7.08269 7.12533 7.16817 7.25531 7.31899 7.44806 7.56670 7.84997 8.59481 9.05678 9.62833 11.12847 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.002257 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.712550 B =12401.665828 C =13153.461025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.118 4.118 4 C -0.005 4.005 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.070 3.930 14 N -0.685 5.685 15 C 0.054 3.946 16 C 0.059 3.941 17 N -0.492 5.492 18 C 0.052 3.948 19 C -0.123 4.123 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.154 4.154 24 C -0.095 4.095 25 C -0.161 4.161 26 C 0.134 3.866 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.015 0.985 34 H 0.008 0.992 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.340 0.660 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 -0.524 29.590 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.059 4.059 14 N -0.317 5.317 15 C -0.076 4.076 16 C -0.066 4.066 17 N -0.206 5.206 18 C -0.074 4.074 19 C -0.161 4.161 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.112 4.112 23 C -0.173 4.173 24 C -0.114 4.114 25 C -0.182 4.182 26 C 0.034 3.966 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.159 0.841 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.251 -0.561 29.317 29.409 hybrid contribution 0.251 -1.086 -0.288 1.151 sum 2.502 -1.647 29.029 29.184 Atomic orbital electron populations 1.21788 0.95577 1.00488 1.00988 1.20421 0.95105 0.96175 0.93197 1.21614 0.99656 0.95503 1.00726 1.19632 0.96031 0.95252 0.93327 1.21132 1.31467 1.13199 0.88664 0.90410 1.25026 0.95822 0.96765 0.96044 1.69909 1.46135 1.40632 0.97821 0.86845 0.81306 0.83986 0.77510 1.20515 1.21550 1.19147 1.22128 0.99730 0.94709 0.89351 1.60499 1.16593 1.53652 1.00973 1.22041 1.00553 0.95745 0.89236 1.22251 1.00950 0.96653 0.86783 1.58092 1.15539 1.45180 1.01750 1.22252 0.85466 1.00505 0.99223 1.21723 1.01910 0.98569 0.93850 1.20514 0.93838 0.97627 0.99488 1.19503 0.96917 1.02493 0.94207 1.20926 0.96237 0.96717 0.97366 1.20962 0.95564 1.02209 0.98556 1.20945 0.99362 0.98117 0.92947 1.21184 0.96309 1.00679 1.00033 1.18598 0.94368 0.92405 0.91180 0.94575 0.91106 0.94123 0.94254 0.92092 0.93687 0.96719 0.97382 0.92890 0.91599 0.95768 0.84062 0.90854 0.94603 0.89967 0.92463 0.89197 0.93304 0.90608 0.90442 0.90882 0.90643 0.86284 0.86333 0.86075 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.89 37.16 0.29 -2.07 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.91 8.20 -34.44 -0.28 -14.20 16 6 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -27.71 13.96 55.43 0.77 -26.94 16 9 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.07 1.11 4.65 -3.83 -0.02 1.09 16 14 N -0.68 -9.14 5.71 -113.78 -0.65 -9.79 16 15 C 0.05 0.61 5.04 -3.83 -0.02 0.59 16 16 C 0.06 0.61 4.59 -3.83 -0.02 0.60 16 17 N -0.49 -5.11 4.65 -171.30 -0.80 -5.90 16 18 C 0.05 0.47 4.72 -3.89 -0.02 0.45 16 19 C -0.12 -0.93 6.19 -26.51 -0.16 -1.10 16 20 C -0.08 -0.59 5.81 -27.81 -0.16 -0.75 16 21 C -0.13 -1.24 5.74 -104.38 -0.60 -1.84 16 22 C -0.09 -0.82 9.63 -39.51 -0.38 -1.20 16 23 C -0.15 -1.31 10.05 -39.62 -0.40 -1.71 16 24 C -0.10 -0.86 10.04 -39.71 -0.40 -1.26 16 25 C -0.16 -1.64 9.03 -39.22 -0.35 -2.00 16 26 C 0.13 1.43 5.81 -83.86 -0.49 0.94 16 27 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 28 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 32 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 33 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.34 4.35 6.77 -39.29 -0.27 4.09 16 39 H 0.07 0.83 6.35 -51.93 -0.33 0.50 16 40 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.81 6.35 -51.93 -0.33 0.48 16 42 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.09 0.78 6.28 -51.93 -0.33 0.45 16 44 H 0.05 0.46 8.11 -51.93 -0.42 0.03 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 51 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 52 H 0.13 1.19 5.98 -52.49 -0.31 0.87 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -30.18 389.00 -11.61 -41.79 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -9.15 Total: 1.76 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -2.98 Total: -23.84 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.67 Total: -42.62 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.18 -11.61 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.567 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds