Wall clock time and date at job start Tue Mar 31 2020 11:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46919 * 2 1 4 4 C 1.53004 * 109.47263 * 239.99851 * 2 1 3 5 5 C 1.50702 * 109.46651 * 59.99947 * 4 2 1 6 6 H 1.07997 * 120.00305 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99701 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00194 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00035 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47247 * 89.99715 * 9 7 5 11 11 H 1.48496 * 109.46939 * 209.99848 * 9 7 5 12 12 H 1.48504 * 109.46708 * 329.99423 * 9 7 5 13 13 C 1.52999 * 109.47226 * 119.99856 * 2 1 3 14 14 N 1.46897 * 109.47319 * 299.99892 * 13 2 1 15 15 C 1.46902 * 111.00380 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47152 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.47152 * 179.97438 * 16 15 14 18 18 C 1.46429 * 110.99863 * 48.68313 * 17 16 15 19 19 C 1.53376 * 108.67745 * 178.97730 * 18 17 16 20 20 C 1.53046 * 107.94511 * 291.85216 * 19 18 17 21 21 C 1.50805 * 109.66310 * 47.35664 * 20 19 18 22 22 C 1.38617 * 118.12644 * 164.37066 * 21 20 19 23 23 C 1.38050 * 120.48231 * 179.38502 * 22 21 20 24 24 C 1.38314 * 119.89017 * 0.22116 * 23 22 21 25 25 C 1.37810 * 119.95326 * 359.64232 * 24 23 22 26 26 C 1.38368 * 122.00403 * 344.01253 * 21 20 19 27 27 H 1.08996 * 109.46690 * 299.99760 * 1 2 3 28 28 H 1.08993 * 109.47281 * 60.00385 * 1 2 3 29 29 H 1.09004 * 109.46704 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46912 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47144 * 299.99930 * 3 2 1 32 32 H 1.08996 * 109.47693 * 60.00292 * 3 2 1 33 33 H 1.08996 * 109.46888 * 179.97438 * 4 2 1 34 34 H 1.08992 * 109.47030 * 299.99861 * 4 2 1 35 35 H 0.97000 * 119.99990 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.47081 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.47169 * 60.00420 * 13 2 1 38 38 H 1.00900 * 110.99619 * 56.04436 * 14 13 2 39 39 H 1.09001 * 109.46508 * 60.00131 * 15 14 13 40 40 H 1.09000 * 109.46641 * 300.00423 * 15 14 13 41 41 H 1.09001 * 109.47326 * 60.00608 * 16 15 14 42 42 H 1.08992 * 109.47452 * 300.00383 * 16 15 14 43 43 H 1.08994 * 109.60625 * 298.73947 * 18 17 16 44 44 H 1.09002 * 109.59863 * 59.06124 * 18 17 16 45 45 H 1.09002 * 109.76230 * 51.45956 * 19 18 17 46 46 H 1.08995 * 109.76447 * 172.18610 * 19 18 17 47 47 H 1.09003 * 109.43995 * 287.29444 * 20 19 18 48 48 H 1.09001 * 109.43734 * 167.41373 * 20 19 18 49 49 H 1.07997 * 119.75587 * 359.36184 * 22 21 20 50 50 H 1.08002 * 120.05217 * 179.97438 * 23 22 21 51 51 H 1.08002 * 120.02647 * 179.90083 * 24 23 22 52 52 H 1.07996 * 119.79013 * 180.27502 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 1.4324 0.1380 -4.8058 9 14 2.9452 -2.0004 -3.9034 10 1 2.0867 -3.2112 -3.9493 11 1 3.7375 -1.9075 -5.1558 12 1 3.8653 -2.0897 -2.7411 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0210 -0.6951 3.6704 16 6 1.4914 0.0527 4.8955 17 7 1.9615 -0.6140 6.1172 18 6 3.4013 -0.8725 6.0531 19 6 3.8385 -1.5440 7.3609 20 6 3.7046 -0.5157 8.4866 21 6 2.3622 0.1651 8.3949 22 6 1.9152 0.8793 9.4957 23 6 0.6992 1.5320 9.4603 24 6 -0.0830 1.4709 8.3212 25 6 0.3562 0.7652 7.2220 26 6 1.5833 0.1000 7.2531 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6768 -1.7489 -1.2492 35 1 1.6668 -0.1934 -5.6868 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7489 1.2492 38 1 0.5439 0.0414 2.4401 39 1 3.1109 -0.6953 3.6873 40 1 1.6571 -1.7225 3.6869 41 1 0.4016 0.0525 4.8784 42 1 1.8548 1.0802 4.8791 43 1 3.6174 -1.5326 5.2131 44 1 3.9364 0.0686 5.9257 45 1 3.1980 -2.4015 7.5670 46 1 4.8755 -1.8695 7.2794 47 1 4.4959 0.2283 8.3943 48 1 3.7912 -1.0189 9.4497 49 1 2.5224 0.9251 10.3876 50 1 0.3575 2.0861 10.3220 51 1 -1.0353 1.9794 8.2916 52 1 -0.2547 0.7229 6.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610270765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:27 Heat of formation + Delta-G solvation = 0.045727 kcal Electronic energy + Delta-G solvation = -26360.444862 eV Core-core repulsion = 22937.078882 eV Total energy + Delta-G solvation = -3423.365981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55968 -39.32919 -38.02438 -36.15967 -35.04237 -34.10192 -31.30923 -31.02648 -29.85872 -28.88589 -27.92252 -26.59204 -25.68567 -24.29334 -23.96978 -23.07526 -21.79535 -20.38755 -19.43750 -18.86805 -18.10800 -17.21595 -17.03616 -16.55785 -16.32142 -15.97244 -15.70276 -15.47494 -15.16639 -14.92012 -14.61402 -14.48830 -14.38210 -14.24184 -14.05460 -13.91889 -13.70819 -13.57604 -13.19657 -12.94788 -12.75881 -12.67595 -12.50033 -12.38215 -12.23574 -12.16674 -12.07742 -11.95978 -11.72008 -11.59339 -11.37349 -11.33594 -10.99981 -10.83682 -10.73126 -10.69899 -9.62426 -9.32979 -8.60700 -8.21593 -6.21846 0.48576 0.51142 1.35496 1.37516 1.48467 2.39461 2.51654 2.94057 3.13306 3.38831 3.72079 3.78755 3.89122 4.00425 4.07162 4.13976 4.18240 4.23237 4.25964 4.32651 4.43260 4.46346 4.52700 4.56962 4.63299 4.70409 4.75495 4.76248 4.84254 4.87742 4.91668 4.95918 5.00290 5.03322 5.05217 5.09512 5.18782 5.20694 5.24475 5.34256 5.37357 5.44799 5.52375 5.57250 5.61959 5.69518 5.75605 5.81739 5.89528 6.01929 6.12902 6.38889 6.41754 6.49040 6.85583 7.40497 8.94561 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.002257 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.712550 B =12401.665828 C =13153.461025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.048 4.048 3 C -0.109 4.109 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.044 0.956 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.249 1.249 13 C 0.082 3.918 14 N -0.685 5.685 15 C 0.062 3.938 16 C 0.069 3.931 17 N -0.498 5.498 18 C 0.048 3.952 19 C -0.119 4.119 20 C -0.077 4.077 21 C -0.141 4.141 22 C -0.101 4.101 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.178 4.178 26 C 0.111 3.889 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.345 0.655 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.137 0.863 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -1.688 32.434 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.049 4.049 3 C -0.166 4.166 4 C -0.042 4.042 5 C -0.541 4.541 6 H 0.063 0.937 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.172 1.172 13 C -0.047 4.047 14 N -0.318 5.318 15 C -0.068 4.068 16 C -0.057 4.057 17 N -0.212 5.212 18 C -0.078 4.078 19 C -0.156 4.156 20 C -0.114 4.114 21 C -0.144 4.144 22 C -0.119 4.119 23 C -0.177 4.177 24 C -0.123 4.123 25 C -0.199 4.199 26 C 0.012 3.988 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.165 0.835 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.158 0.842 50 H 0.157 0.843 51 H 0.155 0.845 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.244 -1.725 32.195 32.404 hybrid contribution -0.127 -0.616 -1.098 1.265 sum 3.117 -2.341 31.098 31.341 Atomic orbital electron populations 1.21706 0.94999 1.00720 1.00839 1.20349 0.95598 0.95870 0.93043 1.21515 0.99442 0.95573 1.00112 1.19605 0.95770 0.95316 0.93478 1.21428 1.30069 1.12096 0.90469 0.93745 1.25946 0.97647 1.00283 0.95803 1.70067 1.48309 1.42856 0.98434 0.85791 0.79714 0.79967 0.77949 1.19610 1.21513 1.17233 1.21848 0.99634 0.94485 0.88720 1.60419 1.16966 1.53587 1.00816 1.21989 1.00665 0.95616 0.88488 1.22099 1.01042 0.95885 0.86684 1.58149 1.16268 1.45213 1.01538 1.22323 0.84834 1.00405 1.00195 1.21715 1.02752 0.98079 0.93095 1.20563 0.92959 0.97731 1.00125 1.19842 0.97728 1.02697 0.94165 1.21249 0.96592 0.96242 0.97862 1.21294 0.95442 1.01948 0.99031 1.21220 1.00202 0.98011 0.92882 1.21350 0.96529 1.01341 1.00651 1.18818 0.94968 0.93273 0.91697 0.91458 0.94510 0.93666 0.94386 0.95346 0.91526 0.96843 0.96993 0.92920 0.91558 0.95326 0.83549 0.90584 0.94502 0.89676 0.93522 0.88941 0.93831 0.91476 0.88577 0.90211 0.89308 0.84230 0.84267 0.84494 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 7.89 71.98 0.57 -3.86 16 2 C -0.05 -1.78 0.60 -52.18 -0.03 -1.81 16 3 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.08 16 5 C -0.50 -28.21 8.20 25.60 0.21 -28.00 16 6 H 0.04 2.74 5.92 -2.91 -0.02 2.72 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 8 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 9 Si 0.94 44.72 27.47 68.60 1.88 46.60 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 13 C 0.08 2.43 4.65 86.30 0.40 2.84 16 14 N -0.69 -16.69 5.71 -513.89 -2.94 -19.62 16 15 C 0.06 1.27 5.04 86.30 0.44 1.71 16 16 C 0.07 1.33 4.59 86.30 0.40 1.73 16 17 N -0.50 -9.74 4.65 -695.86 -3.24 -12.98 16 18 C 0.05 0.80 4.72 86.52 0.41 1.21 16 19 C -0.12 -1.58 6.19 30.74 0.19 -1.39 16 20 C -0.08 -1.01 5.81 29.90 0.17 -0.84 16 21 C -0.14 -2.52 5.74 -19.71 -0.11 -2.63 16 22 C -0.10 -1.56 9.63 22.32 0.21 -1.35 16 23 C -0.16 -2.40 10.05 22.24 0.22 -2.18 16 24 C -0.10 -1.75 10.04 22.19 0.22 -1.53 16 25 C -0.18 -3.48 9.03 22.50 0.20 -3.28 16 26 C 0.11 2.27 5.81 38.30 0.22 2.50 16 27 H 0.07 1.93 6.57 -2.39 -0.02 1.91 16 28 H 0.04 1.53 6.62 -2.39 -0.02 1.52 16 29 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.03 1.22 6.62 -2.39 -0.02 1.20 16 32 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 33 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 34 H 0.01 0.53 7.57 -2.39 -0.02 0.52 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.34 7.93 6.77 -89.69 -0.61 7.32 16 39 H 0.08 1.54 6.35 -2.39 -0.02 1.53 16 40 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.09 1.58 6.35 -2.39 -0.02 1.57 16 42 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 43 H 0.09 1.44 6.28 -2.39 -0.01 1.43 16 44 H 0.04 0.76 8.11 -2.39 -0.02 0.74 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 50 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 51 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 52 H 0.13 2.32 5.98 -2.91 -0.02 2.30 16 Total: -1.00 -66.10 389.00 1.09 -65.01 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.22 Total: 21.00 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 4.86 Total: -40.11 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -5.87 Total: -92.51 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -66.10 1.09 -65.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.056 kcal (2) G-P(sol) polarization free energy of solvation -66.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds