Wall clock time and date at job start Tue Mar 31 2020 11:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 C 1.53004 * 109.47049 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47049 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47056 * 305.00190 * 5 4 3 7 7 N 1.46900 * 109.47107 * 65.00207 * 5 4 3 8 8 C 1.46901 * 110.99884 * 204.99845 * 7 5 4 9 9 C 1.53043 * 109.44899 * 84.96735 * 8 7 5 10 10 C 1.53188 * 109.31421 * 181.38061 * 9 8 7 11 11 N 1.46926 * 108.77470 * 305.36395 * 10 9 8 12 12 C 1.36945 * 120.63247 * 233.58801 * 11 10 9 13 13 H 1.08003 * 119.99538 * 27.69046 * 12 11 10 14 14 C 1.38804 * 119.99927 * 207.69116 * 12 11 10 15 15 N 1.31618 * 120.00488 * 17.36142 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 197.36620 * 14 12 11 17 17 H 1.48504 * 109.46977 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47161 * 120.00192 * 16 14 12 19 19 H 1.48493 * 109.47159 * 240.00031 * 16 14 12 20 20 C 1.46929 * 118.73924 * 53.60504 * 11 10 9 21 21 C 1.53037 * 109.46150 * 205.02373 * 8 7 5 22 22 C 1.50698 * 109.47220 * 185.00091 * 5 4 3 23 23 C 1.38235 * 120.00136 * 279.72795 * 22 5 4 24 24 C 1.38235 * 120.00084 * 179.78179 * 23 22 5 25 25 C 1.38234 * 119.99780 * 0.44717 * 24 23 22 26 26 C 1.38234 * 120.00463 * 359.80761 * 25 24 23 27 27 C 1.38238 * 119.99754 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47372 * 300.00281 * 1 2 3 29 29 H 1.09004 * 109.47132 * 60.00195 * 1 2 3 30 30 H 1.09000 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47554 * 240.00127 * 2 1 3 32 32 H 1.08991 * 109.47261 * 119.99520 * 2 1 3 33 33 H 1.09000 * 109.47655 * 60.00013 * 3 2 1 34 34 H 1.09000 * 109.47585 * 299.99892 * 3 2 1 35 35 H 1.09006 * 109.46851 * 60.00077 * 4 3 2 36 36 H 1.08991 * 109.47359 * 299.99719 * 4 3 2 37 37 H 1.00896 * 110.99589 * 328.95066 * 7 5 4 38 38 H 1.09004 * 109.46413 * 325.00149 * 8 7 5 39 39 H 1.09004 * 109.49690 * 301.32428 * 9 8 7 40 40 H 1.08999 * 109.49980 * 61.42497 * 9 8 7 41 41 H 1.09003 * 109.58923 * 185.57864 * 10 9 8 42 42 H 1.09001 * 109.59191 * 65.14633 * 10 9 8 43 43 H 0.97003 * 120.00197 * 179.97438 * 15 14 12 44 44 H 1.09001 * 109.58690 * 186.60588 * 20 11 10 45 45 H 1.09001 * 109.70191 * 66.25611 * 20 11 10 46 46 H 1.08997 * 109.50227 * 298.58466 * 21 8 7 47 47 H 1.09007 * 109.49301 * 58.64848 * 21 8 7 48 48 H 1.08003 * 119.99693 * 0.02562 * 23 22 5 49 49 H 1.07998 * 119.99906 * 180.27343 * 24 23 22 50 50 H 1.08005 * 119.99952 * 179.82833 * 25 24 23 51 51 H 1.07995 * 120.00470 * 179.97438 * 26 25 24 52 52 H 1.07995 * 119.99991 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6455 3.4244 -0.8406 7 7 3.6907 3.5415 1.2566 8 6 3.6120 4.9985 1.0864 9 6 2.2332 5.3736 0.5382 10 6 2.1664 6.8898 0.3294 11 7 2.5160 7.5567 1.5910 12 6 1.6801 8.4916 2.1410 13 1 0.6181 8.4451 1.9504 14 6 2.1979 9.4990 2.9434 15 7 3.4849 9.7723 2.9085 16 14 1.0679 10.4668 4.0731 17 1 -0.3233 9.9683 3.9271 18 1 1.5095 10.2952 5.4805 19 1 1.1193 11.9058 3.7102 20 6 3.7798 7.2018 2.2511 21 6 3.8285 5.6822 2.4383 22 6 5.5818 2.8871 -0.1219 23 6 6.3670 2.6511 0.9911 24 6 7.7446 2.6484 0.8771 25 6 8.3372 2.8908 -0.3480 26 6 7.5523 3.1320 -1.4600 27 6 6.1745 3.1302 -1.3469 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8892 36 1 3.9330 0.9290 0.8908 37 1 2.8190 3.1703 1.6035 38 1 4.3818 5.3246 0.3870 39 1 2.0702 4.8679 -0.4136 40 1 1.4643 5.0700 1.2485 41 1 1.1564 7.1738 0.0336 42 1 2.8729 7.1833 -0.4470 43 1 3.8466 10.4765 3.4690 44 1 3.8344 7.6917 3.2233 45 1 4.6193 7.5210 1.6335 46 1 3.0446 5.3756 3.1308 47 1 4.8007 5.3955 2.8393 48 1 5.9039 2.4650 1.9489 49 1 8.3579 2.4597 1.7458 50 1 9.4137 2.8915 -0.4365 51 1 8.0153 3.3218 -2.4170 52 1 5.5612 3.3190 -2.2156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610420576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:13 Heat of formation + Delta-G solvation = 21.538263 kcal Electronic energy + Delta-G solvation = -27249.958498 eV Core-core repulsion = 23827.524504 eV Total energy + Delta-G solvation = -3422.433994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.64435 -37.98464 -36.55297 -34.65796 -32.86004 -31.10390 -30.73555 -30.15585 -29.77539 -28.48560 -25.73495 -24.30579 -22.81566 -22.42427 -22.08824 -21.38352 -21.11767 -20.10439 -19.10674 -16.79905 -16.69358 -15.98486 -15.36677 -15.14944 -15.00796 -14.63156 -14.14066 -14.07208 -13.66978 -13.51858 -13.32333 -13.22700 -13.08201 -12.96885 -12.75088 -12.56621 -12.50500 -12.19261 -11.65782 -11.43750 -11.41203 -11.25703 -11.12244 -10.98409 -10.90133 -10.74124 -10.69186 -10.67913 -10.47024 -10.19755 -10.14370 -9.94502 -9.66583 -9.41285 -8.78635 -8.57581 -8.44935 -8.03953 -6.63397 -5.75019 -3.16890 1.46386 1.55161 3.39060 3.46889 3.49067 3.89134 4.33441 4.52616 4.61531 4.76377 4.81497 5.01514 5.03227 5.09905 5.20342 5.23528 5.29976 5.37962 5.40689 5.47023 5.53785 5.57706 5.63391 5.66517 5.72034 5.75115 5.77468 5.80435 5.88445 5.94593 6.02966 6.09760 6.12222 6.15050 6.20241 6.23784 6.36200 6.54625 6.56324 6.61190 6.63698 6.68128 6.74702 6.85203 6.90378 6.99037 7.13243 7.40873 7.45436 7.70577 7.75370 7.83651 8.49145 9.25536 9.89288 10.46152 11.33394 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.003758 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.455288 B = 7448.175174 C = 9381.347405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.115 4.115 5 C 0.125 3.875 6 H 0.051 0.949 7 N -0.680 5.680 8 C 0.099 3.901 9 C -0.158 4.158 10 C 0.150 3.850 11 N -0.592 5.592 12 C -0.251 4.251 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.902 5.902 16 Si 0.900 3.100 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.291 1.291 20 C 0.171 3.829 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.083 4.083 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.339 0.661 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.015 0.985 43 H 0.253 0.747 44 H 0.087 0.913 45 H 0.015 0.985 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.129 0.871 49 H 0.117 0.883 50 H 0.115 0.885 51 H 0.116 0.884 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -19.864 -7.206 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.162 4.162 4 C -0.152 4.152 5 C 0.015 3.985 6 H 0.069 0.931 7 N -0.312 5.312 8 C -0.010 4.010 9 C -0.199 4.199 10 C 0.022 3.978 11 N -0.315 5.315 12 C -0.381 4.381 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.730 3.270 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.218 1.218 20 C 0.045 3.955 21 C -0.163 4.163 22 C -0.069 4.069 23 C -0.102 4.102 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.138 4.138 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.147 0.853 49 H 0.135 0.865 50 H 0.133 0.867 51 H 0.134 0.866 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.947 -19.720 -6.858 21.248 hybrid contribution -1.247 0.760 0.000 1.461 sum 2.699 -18.960 -6.858 20.342 Atomic orbital electron populations 1.21784 0.95952 1.01390 1.01991 1.21495 0.95781 0.96803 1.01850 1.21693 0.95284 0.96903 1.02272 1.21748 0.95115 0.95658 1.02727 1.20401 0.91083 0.94386 0.92642 0.93099 1.60739 1.38022 1.05115 1.27322 1.21515 0.95867 0.85357 0.98306 1.22680 0.97993 0.99953 0.99263 1.20802 0.98132 0.89617 0.89202 1.44076 1.21844 1.44856 1.20692 1.19219 0.89236 1.03711 1.25935 0.91780 1.25019 0.95976 0.96767 1.01879 1.70051 1.11697 1.32109 1.40785 0.86257 0.80280 0.79575 0.80874 1.20309 1.21556 1.21773 1.20784 0.86855 0.88757 0.99089 1.22147 1.00179 0.98846 0.95104 1.19857 0.95183 0.98729 0.93150 1.21036 0.92775 0.97528 0.98831 1.21185 0.95196 1.00853 0.97349 1.21088 0.99459 1.00742 0.93204 1.21026 0.93780 1.01087 0.98500 1.21019 0.94846 1.00742 0.97208 0.92592 0.92810 0.92976 0.92253 0.92026 0.91650 0.92038 0.91547 0.91011 0.84062 0.91429 0.93768 0.92337 0.93069 0.96749 0.93727 0.89448 0.96671 0.92989 0.92864 0.85282 0.86479 0.86665 0.86564 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.15 5.05 -26.73 -0.13 -1.28 16 4 C -0.11 -1.13 4.79 -26.73 -0.13 -1.26 16 5 C 0.12 1.51 2.06 -68.87 -0.14 1.37 16 6 H 0.05 0.66 6.97 -51.92 -0.36 0.30 16 7 N -0.68 -9.33 5.29 -100.91 -0.53 -9.86 16 8 C 0.10 1.68 2.24 -67.67 -0.15 1.52 16 9 C -0.16 -2.73 5.31 -26.61 -0.14 -2.87 16 10 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 11 N -0.59 -15.04 3.00 -172.32 -0.52 -15.56 16 12 C -0.25 -7.00 9.59 -15.06 -0.14 -7.14 16 13 H 0.06 1.76 7.89 -52.48 -0.41 1.34 16 14 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 15 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 16 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 21 C -0.12 -2.42 5.69 -26.62 -0.15 -2.57 16 22 C -0.07 -0.88 4.61 -104.62 -0.48 -1.36 16 23 C -0.08 -1.08 9.33 -39.58 -0.37 -1.45 16 24 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 26 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.12 -1.47 9.67 -39.58 -0.38 -1.85 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.65 6.42 -51.93 -0.33 0.32 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.34 4.43 6.22 -39.29 -0.24 4.18 16 38 H 0.07 1.27 7.63 -51.93 -0.40 0.87 16 39 H 0.04 0.67 7.41 -51.93 -0.38 0.29 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.13 1.68 7.71 -52.48 -0.40 1.27 16 49 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 50 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 52 H 0.12 1.26 8.04 -52.49 -0.42 0.84 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -29.37 402.00 -12.33 -41.69 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -9.59 Total: 3.96 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -3.34 Total: -17.24 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.43 Total: -51.35 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.37 -12.33 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610420576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.231 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds