Wall clock time and date at job start Tue Mar 31 2020 11:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 C 1.53004 * 109.47049 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47049 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47056 * 305.00190 * 5 4 3 7 7 N 1.46900 * 109.47107 * 65.00207 * 5 4 3 8 8 C 1.46901 * 110.99884 * 204.99845 * 7 5 4 9 9 C 1.53043 * 109.44899 * 84.96735 * 8 7 5 10 10 C 1.53188 * 109.31421 * 181.38061 * 9 8 7 11 11 N 1.46926 * 108.77470 * 305.36395 * 10 9 8 12 12 C 1.36945 * 120.63247 * 233.58801 * 11 10 9 13 13 H 1.08003 * 119.99538 * 27.69046 * 12 11 10 14 14 C 1.38804 * 119.99927 * 207.69116 * 12 11 10 15 15 N 1.31618 * 120.00488 * 17.36142 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 197.36620 * 14 12 11 17 17 H 1.48504 * 109.46977 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47161 * 120.00192 * 16 14 12 19 19 H 1.48493 * 109.47159 * 240.00031 * 16 14 12 20 20 C 1.46929 * 118.73924 * 53.60504 * 11 10 9 21 21 C 1.53037 * 109.46150 * 205.02373 * 8 7 5 22 22 C 1.50698 * 109.47220 * 185.00091 * 5 4 3 23 23 C 1.38235 * 120.00136 * 279.72795 * 22 5 4 24 24 C 1.38235 * 120.00084 * 179.78179 * 23 22 5 25 25 C 1.38234 * 119.99780 * 0.44717 * 24 23 22 26 26 C 1.38234 * 120.00463 * 359.80761 * 25 24 23 27 27 C 1.38238 * 119.99754 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47372 * 300.00281 * 1 2 3 29 29 H 1.09004 * 109.47132 * 60.00195 * 1 2 3 30 30 H 1.09000 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47554 * 240.00127 * 2 1 3 32 32 H 1.08991 * 109.47261 * 119.99520 * 2 1 3 33 33 H 1.09000 * 109.47655 * 60.00013 * 3 2 1 34 34 H 1.09000 * 109.47585 * 299.99892 * 3 2 1 35 35 H 1.09006 * 109.46851 * 60.00077 * 4 3 2 36 36 H 1.08991 * 109.47359 * 299.99719 * 4 3 2 37 37 H 1.00896 * 110.99589 * 328.95066 * 7 5 4 38 38 H 1.09004 * 109.46413 * 325.00149 * 8 7 5 39 39 H 1.09004 * 109.49690 * 301.32428 * 9 8 7 40 40 H 1.08999 * 109.49980 * 61.42497 * 9 8 7 41 41 H 1.09003 * 109.58923 * 185.57864 * 10 9 8 42 42 H 1.09001 * 109.59191 * 65.14633 * 10 9 8 43 43 H 0.97003 * 120.00197 * 179.97438 * 15 14 12 44 44 H 1.09001 * 109.58690 * 186.60588 * 20 11 10 45 45 H 1.09001 * 109.70191 * 66.25611 * 20 11 10 46 46 H 1.08997 * 109.50227 * 298.58466 * 21 8 7 47 47 H 1.09007 * 109.49301 * 58.64848 * 21 8 7 48 48 H 1.08003 * 119.99693 * 0.02562 * 23 22 5 49 49 H 1.07998 * 119.99906 * 180.27343 * 24 23 22 50 50 H 1.08005 * 119.99952 * 179.82833 * 25 24 23 51 51 H 1.07995 * 120.00470 * 179.97438 * 26 25 24 52 52 H 1.07995 * 119.99991 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6455 3.4244 -0.8406 7 7 3.6907 3.5415 1.2566 8 6 3.6120 4.9985 1.0864 9 6 2.2332 5.3736 0.5382 10 6 2.1664 6.8898 0.3294 11 7 2.5160 7.5567 1.5910 12 6 1.6801 8.4916 2.1410 13 1 0.6181 8.4451 1.9504 14 6 2.1979 9.4990 2.9434 15 7 3.4849 9.7723 2.9085 16 14 1.0679 10.4668 4.0731 17 1 -0.3233 9.9683 3.9271 18 1 1.5095 10.2952 5.4805 19 1 1.1193 11.9058 3.7102 20 6 3.7798 7.2018 2.2511 21 6 3.8285 5.6822 2.4383 22 6 5.5818 2.8871 -0.1219 23 6 6.3670 2.6511 0.9911 24 6 7.7446 2.6484 0.8771 25 6 8.3372 2.8908 -0.3480 26 6 7.5523 3.1320 -1.4600 27 6 6.1745 3.1302 -1.3469 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8892 36 1 3.9330 0.9290 0.8908 37 1 2.8190 3.1703 1.6035 38 1 4.3818 5.3246 0.3870 39 1 2.0702 4.8679 -0.4136 40 1 1.4643 5.0700 1.2485 41 1 1.1564 7.1738 0.0336 42 1 2.8729 7.1833 -0.4470 43 1 3.8466 10.4765 3.4690 44 1 3.8344 7.6917 3.2233 45 1 4.6193 7.5210 1.6335 46 1 3.0446 5.3756 3.1308 47 1 4.8007 5.3955 2.8393 48 1 5.9039 2.4650 1.9489 49 1 8.3579 2.4597 1.7458 50 1 9.4137 2.8915 -0.4365 51 1 8.0153 3.3218 -2.4170 52 1 5.5612 3.3190 -2.2156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610420576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:12 Heat of formation + Delta-G solvation = 8.191818 kcal Electronic energy + Delta-G solvation = -27250.537243 eV Core-core repulsion = 23827.524504 eV Total energy + Delta-G solvation = -3423.012740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66916 -39.35118 -37.71149 -35.84067 -34.34650 -32.71263 -31.66840 -31.59775 -30.91330 -29.93103 -26.97269 -25.90799 -23.84157 -23.64321 -23.32883 -23.00504 -21.83525 -21.11615 -20.74341 -18.74927 -17.60154 -17.04677 -16.76508 -16.38094 -16.08557 -15.95134 -15.36178 -15.32182 -15.09279 -14.87641 -14.77978 -14.47547 -14.15352 -14.07215 -13.86806 -13.72426 -13.54853 -13.37158 -13.09683 -13.00708 -12.64094 -12.49939 -12.47751 -12.21541 -12.05798 -11.97099 -11.92845 -11.83553 -11.78593 -11.73455 -11.49229 -11.38744 -11.26683 -11.12087 -10.55619 -9.70380 -9.50059 -9.25289 -8.69921 -7.87793 -5.33176 0.54960 0.63164 1.45501 1.47316 1.58020 2.50825 2.96388 3.19017 3.30446 3.68707 3.77399 3.92566 4.03541 4.07723 4.15077 4.17043 4.25488 4.29070 4.39231 4.40025 4.45909 4.53155 4.54358 4.59937 4.72514 4.74457 4.82252 4.84764 4.87772 4.92649 4.97326 4.99518 5.06446 5.12028 5.16741 5.20767 5.22570 5.28325 5.30702 5.32727 5.36876 5.44972 5.51712 5.52872 5.64437 5.66952 5.72406 5.73349 5.81508 6.22040 6.24832 6.38872 6.59573 7.14208 7.85529 8.37653 9.18882 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.003758 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.455288 B = 7448.175174 C = 9381.347405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.120 4.120 4 C -0.104 4.104 5 C 0.129 3.871 6 H 0.047 0.953 7 N -0.674 5.674 8 C 0.115 3.885 9 C -0.142 4.142 10 C 0.144 3.856 11 N -0.609 5.609 12 C -0.263 4.263 13 H 0.067 0.933 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.290 1.290 19 H -0.292 1.292 20 C 0.180 3.820 21 C -0.108 4.108 22 C -0.082 4.082 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.133 4.133 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.346 0.654 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.007 0.993 43 H 0.250 0.750 44 H 0.053 0.947 45 H -0.012 1.012 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.124 0.876 49 H 0.132 0.868 50 H 0.137 0.863 51 H 0.137 0.863 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -21.676 -7.842 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.158 4.158 4 C -0.142 4.142 5 C 0.020 3.980 6 H 0.065 0.935 7 N -0.306 5.306 8 C 0.005 3.995 9 C -0.182 4.182 10 C 0.018 3.982 11 N -0.333 5.333 12 C -0.394 4.394 13 H 0.084 0.916 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.795 3.205 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.219 1.219 20 C 0.054 3.946 21 C -0.148 4.148 22 C -0.083 4.083 23 C -0.118 4.118 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.152 4.152 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.006 0.994 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.142 0.858 49 H 0.150 0.850 50 H 0.155 0.845 51 H 0.155 0.845 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.341 -21.570 -7.513 23.084 hybrid contribution -1.009 1.313 0.127 1.660 sum 2.332 -20.258 -7.385 21.688 Atomic orbital electron populations 1.21788 0.95788 1.01878 1.01718 1.21470 0.95892 0.96051 1.02250 1.21658 0.94652 0.97628 1.01864 1.21662 0.95492 0.94006 1.03053 1.20417 0.90895 0.95432 0.91288 0.93490 1.60589 1.38459 1.02965 1.28589 1.21157 0.95187 0.87249 0.95898 1.22502 0.98099 0.96843 1.00801 1.20967 0.97841 0.92004 0.87364 1.44327 1.21677 1.44996 1.22261 1.19559 0.89772 1.04019 1.26006 0.91566 1.25797 0.97334 0.98059 1.03400 1.70208 1.13470 1.32837 1.41662 0.85218 0.78949 0.77829 0.78522 1.18998 1.21626 1.21901 1.20544 0.85866 0.91595 0.96579 1.21895 1.00436 0.95539 0.96892 1.19992 0.95519 0.99253 0.93502 1.21111 0.93451 0.98498 0.98749 1.21447 0.95118 1.00613 0.98342 1.21411 1.00740 1.00074 0.92912 1.21352 0.93687 1.00396 0.99560 1.21248 0.95551 1.00920 0.97432 0.93058 0.92885 0.92166 0.91650 0.91838 0.92253 0.92175 0.90764 0.91102 0.83223 0.92970 0.90898 0.92204 0.92895 0.97470 0.94137 0.92889 0.99372 0.93169 0.92280 0.85774 0.85019 0.84519 0.84549 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.44 16 2 C -0.12 -1.69 5.93 30.59 0.18 -1.50 16 3 C -0.12 -1.96 5.05 30.60 0.15 -1.81 16 4 C -0.10 -1.85 4.79 30.60 0.15 -1.70 16 5 C 0.13 2.92 2.06 44.17 0.09 3.01 16 6 H 0.05 1.12 6.97 -2.38 -0.02 1.10 16 7 N -0.67 -17.48 5.29 -473.16 -2.50 -19.98 16 8 C 0.12 3.81 2.24 44.94 0.10 3.91 16 9 C -0.14 -4.69 5.31 30.67 0.16 -4.52 16 10 C 0.14 6.12 6.52 86.36 0.56 6.68 16 11 N -0.61 -31.44 3.00 -699.09 -2.09 -33.53 16 12 C -0.26 -14.81 9.59 84.03 0.81 -14.01 16 13 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 14 C -0.05 -2.88 4.91 84.86 0.42 -2.47 16 15 N -0.94 -56.71 11.19 21.65 0.24 -56.47 16 16 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 C 0.18 9.09 5.31 86.36 0.46 9.55 16 21 C -0.11 -4.27 5.69 30.67 0.17 -4.09 16 22 C -0.08 -2.01 4.61 -19.86 -0.09 -2.10 16 23 C -0.10 -2.50 9.33 22.27 0.21 -2.29 16 24 C -0.14 -3.12 10.05 22.27 0.22 -2.90 16 25 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 26 C -0.13 -2.82 10.05 22.27 0.22 -2.59 16 27 C -0.13 -3.08 9.67 22.27 0.22 -2.87 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.05 6.42 -2.39 -0.02 1.03 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.35 8.33 6.22 -89.70 -0.56 7.78 16 38 H 0.05 1.93 7.63 -2.38 -0.02 1.91 16 39 H 0.07 2.02 7.41 -2.38 -0.02 2.01 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.05 3.02 6.04 -2.39 -0.01 3.00 16 45 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 48 H 0.12 3.14 7.71 -2.91 -0.02 3.12 16 49 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 50 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 51 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 52 H 0.13 2.55 8.04 -2.91 -0.02 2.52 16 Total: -1.00 -64.00 402.00 2.95 -61.06 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.30 Total: 25.09 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.97 Total: -23.74 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.35 Total: -109.99 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -64.00 2.95 -61.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610420576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.247 kcal (2) G-P(sol) polarization free energy of solvation -64.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds