Wall clock time and date at job start Tue Mar 31 2020 11:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46760 * 2 1 4 4 C 1.53003 * 109.47152 * 240.00206 * 2 1 3 5 5 C 1.52994 * 109.46898 * 295.56444 * 4 2 1 6 6 H 1.09001 * 109.47174 * 54.10263 * 5 4 2 7 7 N 1.46899 * 109.46970 * 174.09923 * 5 4 2 8 8 C 1.46896 * 111.00582 * 273.11022 * 7 5 4 9 9 C 1.53041 * 109.46055 * 274.31914 * 8 7 5 10 10 C 1.53189 * 109.31293 * 178.59691 * 9 8 7 11 11 N 1.46928 * 108.76842 * 54.65447 * 10 9 8 12 12 C 1.36930 * 120.63031 * 126.35765 * 11 10 9 13 13 H 1.08004 * 120.00270 * 208.97254 * 12 11 10 14 14 C 1.38815 * 120.00449 * 28.97280 * 12 11 10 15 15 N 1.31621 * 119.99504 * 15.44429 * 14 12 11 16 16 Si 1.86795 * 120.00373 * 195.43974 * 14 12 11 17 17 H 1.48499 * 109.46869 * 94.97336 * 16 14 12 18 18 H 1.48503 * 109.47149 * 214.97319 * 16 14 12 19 19 H 1.48493 * 109.47346 * 334.97150 * 16 14 12 20 20 C 1.46921 * 118.73473 * 306.38724 * 11 10 9 21 21 C 1.53032 * 109.46541 * 154.26301 * 8 7 5 22 22 C 1.50699 * 109.47668 * 294.10090 * 5 4 2 23 23 C 1.38232 * 119.99959 * 279.72980 * 22 5 4 24 24 C 1.38242 * 119.99885 * 179.80786 * 23 22 5 25 25 C 1.38230 * 119.99944 * 0.39695 * 24 23 22 26 26 C 1.38236 * 120.00233 * 359.85268 * 25 24 23 27 27 C 1.38236 * 120.00065 * 100.00102 * 22 5 4 28 28 H 1.09000 * 109.46556 * 182.74850 * 1 2 3 29 29 H 1.08993 * 109.47234 * 302.74440 * 1 2 3 30 30 H 1.08998 * 109.47382 * 62.75156 * 1 2 3 31 31 H 1.09003 * 109.47254 * 120.00040 * 2 1 3 32 32 H 1.09004 * 109.46999 * 60.00336 * 3 2 1 33 33 H 1.09008 * 109.46790 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47353 * 299.99646 * 3 2 1 35 35 H 1.08996 * 109.46869 * 55.56818 * 4 2 1 36 36 H 1.09005 * 109.46801 * 175.56914 * 4 2 1 37 37 H 1.00907 * 110.99684 * 37.06808 * 7 5 4 38 38 H 1.09004 * 109.45903 * 34.28743 * 8 7 5 39 39 H 1.09000 * 109.49968 * 298.56483 * 9 8 7 40 40 H 1.09006 * 109.50092 * 58.65712 * 9 8 7 41 41 H 1.09006 * 109.60040 * 294.86413 * 10 9 8 42 42 H 1.09008 * 109.70329 * 174.50533 * 10 9 8 43 43 H 0.96996 * 120.00019 * 180.02562 * 15 14 12 44 44 H 1.09005 * 109.58704 * 293.81285 * 20 11 10 45 45 H 1.09001 * 109.70325 * 173.46083 * 20 11 10 46 46 H 1.09006 * 109.49605 * 301.33938 * 21 8 7 47 47 H 1.08997 * 109.50277 * 61.43410 * 21 8 7 48 48 H 1.07996 * 120.00128 * 359.97438 * 23 22 5 49 49 H 1.07998 * 119.99772 * 180.22830 * 24 23 22 50 50 H 1.08002 * 120.00082 * 179.83839 * 25 24 23 51 51 H 1.08003 * 120.00485 * 179.97438 * 26 25 24 52 52 H 1.08007 * 119.99939 * 359.97438 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6231 -2.1922 -1.1948 6 1 0.5450 -2.2592 -1.0488 7 7 1.9884 -2.8517 -2.4556 8 6 0.9256 -2.6973 -3.4578 9 6 -0.1136 -3.8056 -3.2739 10 6 -1.2380 -3.6208 -4.2978 11 7 -0.6483 -3.5640 -5.6423 12 6 -1.0897 -4.3992 -6.6336 13 1 -0.4173 -4.7046 -7.4217 14 6 -2.4014 -4.8534 -6.6257 15 7 -3.2979 -4.2620 -5.8649 16 14 -2.8941 -6.3037 -7.6948 17 1 -2.8299 -7.5530 -6.8945 18 1 -4.2794 -6.1046 -8.1913 19 1 -1.9649 -6.4066 -8.8485 20 6 0.4245 -2.5945 -5.9027 21 6 1.5300 -2.7905 -4.8606 22 6 2.3283 -2.8722 -0.0496 23 6 3.6379 -3.2900 -0.1945 24 6 4.2860 -3.9102 0.8574 25 6 3.6218 -4.1199 2.0513 26 6 2.3104 -3.7067 2.1946 27 6 1.6636 -3.0831 1.1440 28 1 -0.3632 -1.0265 0.0493 29 1 -0.3633 0.5558 0.8643 30 1 -0.3634 0.4705 -0.9136 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6133 -0.2552 -2.1374 36 1 3.1272 -0.6529 -1.2898 37 1 2.8683 -2.5023 -2.8047 38 1 0.4467 -1.7261 -3.3325 39 1 0.3592 -4.7762 -3.4236 40 1 -0.5269 -3.7533 -2.2666 41 1 -1.7703 -2.6920 -4.0927 42 1 -1.9311 -4.4600 -4.2379 43 1 -4.2144 -4.5796 -5.8590 44 1 0.0278 -1.5819 -5.8286 45 1 0.8309 -2.7554 -6.9012 46 1 2.2869 -2.0156 -4.9829 47 1 1.9873 -3.7707 -4.9953 48 1 4.1557 -3.1296 -1.1286 49 1 5.3104 -4.2333 0.7453 50 1 4.1272 -4.6068 2.8722 51 1 1.7912 -3.8709 3.1273 52 1 0.6390 -2.7602 1.2559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610511978.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:19 Heat of formation + Delta-G solvation = 24.700903 kcal Electronic energy + Delta-G solvation = -27485.755587 eV Core-core repulsion = 24063.458735 eV Total energy + Delta-G solvation = -3422.296852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.85547 -38.02442 -36.77726 -34.71699 -32.64894 -31.07304 -30.84258 -29.89036 -29.12520 -27.48252 -27.22491 -24.68775 -23.62311 -22.56232 -22.13968 -21.36487 -20.72859 -19.63900 -19.04739 -17.02621 -16.60640 -15.79271 -15.34700 -15.17880 -14.88096 -14.54287 -14.30552 -14.11511 -13.83728 -13.53585 -13.42751 -13.31844 -12.98918 -12.84441 -12.69871 -12.34288 -12.23198 -12.13906 -12.01422 -11.71952 -11.39743 -11.28814 -11.07373 -11.03933 -10.90140 -10.75643 -10.70924 -10.61936 -10.46627 -10.17275 -10.13968 -9.88259 -9.51466 -9.47598 -8.86924 -8.65595 -8.44608 -8.07389 -6.62035 -5.74850 -3.18592 1.40677 1.45010 3.40472 3.47337 3.48568 3.80762 4.32470 4.52843 4.66705 4.76820 4.84958 4.93818 4.96665 5.04108 5.14709 5.31237 5.34610 5.41171 5.46882 5.50135 5.55089 5.55869 5.59541 5.62611 5.68885 5.74436 5.81611 5.83797 5.90528 5.95482 6.03367 6.05725 6.10026 6.17350 6.24063 6.30990 6.36815 6.45262 6.50075 6.53353 6.59544 6.68548 6.77632 6.80284 6.83141 7.02475 7.04105 7.42281 7.45969 7.65093 7.74366 7.83894 8.50206 9.25897 9.88899 10.46119 11.33570 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003271 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.731109 B = 8557.437970 C = 9207.741775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.122 3.878 6 H 0.090 0.910 7 N -0.679 5.679 8 C 0.098 3.902 9 C -0.123 4.123 10 C 0.171 3.829 11 N -0.591 5.591 12 C -0.251 4.251 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.149 3.851 21 C -0.133 4.133 22 C -0.053 4.053 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.117 4.117 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.333 0.667 38 H 0.037 0.963 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.014 0.986 42 H 0.088 0.912 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.119 0.881 49 H 0.116 0.884 50 H 0.115 0.885 51 H 0.117 0.883 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.190 7.377 15.693 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.176 4.176 5 C 0.012 3.988 6 H 0.108 0.892 7 N -0.308 5.308 8 C -0.010 4.010 9 C -0.163 4.163 10 C 0.045 3.955 11 N -0.314 5.314 12 C -0.381 4.381 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.549 5.549 16 Si 0.733 3.267 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.022 3.978 21 C -0.173 4.173 22 C -0.054 4.054 23 C -0.117 4.117 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.151 0.849 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.133 0.867 51 H 0.135 0.865 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.784 6.710 15.856 21.444 hybrid contribution -0.205 0.159 -0.691 0.738 sum 12.579 6.869 15.165 20.866 Atomic orbital electron populations 1.21917 0.95160 1.01965 1.01747 1.21080 0.95934 0.95843 0.98457 1.21835 1.00680 0.96246 1.01587 1.22355 1.00948 0.95863 0.98454 1.20609 0.99572 0.89999 0.88664 0.89227 1.60742 1.05647 1.60558 1.03890 1.21475 0.91706 0.97734 0.90120 1.22194 0.97185 0.98051 0.98875 1.20798 0.92048 1.00621 0.82030 1.44038 1.40403 1.39483 1.07484 1.19210 0.93126 1.20681 1.05046 0.91769 1.25064 0.95410 0.99901 0.99240 1.70022 1.01964 1.40252 1.42615 0.86266 0.77581 0.82802 0.80093 1.21475 1.21806 1.20400 1.20841 0.88957 0.92380 0.95670 1.22215 0.98615 1.01142 0.95314 1.19810 0.94048 0.97345 0.94167 1.20904 0.94509 0.98072 0.98212 1.21111 0.99770 0.99696 0.93588 1.21060 0.95103 1.00982 0.97699 1.21060 0.95053 0.99197 0.98729 1.21020 0.99737 0.99594 0.93159 0.92377 0.92884 0.92567 0.90868 0.92897 0.92979 0.92787 0.91523 0.91880 0.84884 0.94529 0.92194 0.93869 0.96824 0.89421 0.93709 0.96772 0.92767 0.93616 0.91546 0.86287 0.86547 0.86668 0.86496 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.88 37.16 0.33 -1.20 16 2 C -0.09 -0.92 2.76 -90.62 -0.25 -1.17 16 3 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 4 C -0.14 -1.48 4.10 -26.73 -0.11 -1.59 16 5 C 0.12 1.51 1.93 -68.87 -0.13 1.37 16 6 H 0.09 1.24 5.22 -51.93 -0.27 0.97 16 7 N -0.68 -9.49 5.48 -100.92 -0.55 -10.05 16 8 C 0.10 1.65 2.25 -67.68 -0.15 1.50 16 9 C -0.12 -2.45 5.58 -26.61 -0.15 -2.60 16 10 C 0.17 4.15 5.29 -3.71 -0.02 4.13 16 11 N -0.59 -14.99 2.99 -172.32 -0.52 -15.50 16 12 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 13 H 0.06 1.76 7.88 -52.48 -0.41 1.34 16 14 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 15 N -0.90 -26.48 11.16 55.49 0.62 -25.86 16 16 Si 0.90 21.96 29.58 -169.99 -5.03 16.94 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.15 3.13 6.51 -3.71 -0.02 3.11 16 21 C -0.13 -2.30 5.35 -26.62 -0.14 -2.44 16 22 C -0.05 -0.64 4.26 -104.63 -0.45 -1.09 16 23 C -0.10 -1.15 9.33 -39.58 -0.37 -1.52 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 25 C -0.13 -1.33 10.05 -39.59 -0.40 -1.73 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.12 -1.34 8.65 -39.58 -0.34 -1.68 16 28 H 0.06 0.61 6.32 -51.93 -0.33 0.29 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.75 6.53 -51.93 -0.34 0.41 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.33 4.19 7.48 -39.29 -0.29 3.89 16 38 H 0.04 0.64 7.24 -51.93 -0.38 0.26 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.04 0.81 7.49 -51.93 -0.39 0.42 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 2.40 6.06 -51.92 -0.31 2.08 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 46 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.12 1.30 7.30 -52.49 -0.38 0.92 16 49 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 50 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 51 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 52 H 0.12 1.25 7.80 -52.48 -0.41 0.84 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -29.45 396.07 -11.77 -41.23 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -9.37 Total: 3.69 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.89 Total: -16.41 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.45 Total: -51.41 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.45 -11.77 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610511978.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.926 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds