Wall clock time and date at job start Tue Mar 31 2020 11:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47218 * 2 1 4 4 C 1.52997 * 109.46952 * 120.00019 * 2 1 3 5 5 C 1.52998 * 109.47210 * 63.29525 * 4 2 1 6 6 H 1.08993 * 109.47011 * 303.81874 * 5 4 2 7 7 N 1.46899 * 109.47081 * 183.81786 * 5 4 2 8 8 C 1.46895 * 111.00141 * 87.47964 * 7 5 4 9 9 C 1.53037 * 109.44828 * 86.02185 * 8 7 5 10 10 C 1.53196 * 109.31526 * 181.37825 * 9 8 7 11 11 N 1.46919 * 108.77627 * 305.36680 * 10 9 8 12 12 C 1.36936 * 120.63382 * 233.58492 * 11 10 9 13 13 H 1.07996 * 120.00391 * 152.43923 * 12 11 10 14 14 C 1.38816 * 119.99521 * 332.43788 * 12 11 10 15 15 N 1.31619 * 120.00180 * 335.89043 * 14 12 11 16 16 Si 1.86797 * 119.99712 * 155.89129 * 14 12 11 17 17 H 1.48499 * 109.47214 * 84.98695 * 16 14 12 18 18 H 1.48498 * 109.47117 * 204.98721 * 16 14 12 19 19 H 1.48505 * 109.47065 * 324.98340 * 16 14 12 20 20 C 1.46934 * 118.73911 * 53.60531 * 11 10 9 21 21 C 1.53043 * 109.46188 * 206.08283 * 8 7 5 22 22 C 1.50699 * 109.46754 * 63.82019 * 5 4 2 23 23 C 1.38230 * 120.00202 * 79.72918 * 22 5 4 24 24 C 1.38239 * 119.99881 * 179.78265 * 23 22 5 25 25 C 1.38236 * 120.00150 * 0.44554 * 24 23 22 26 26 C 1.38243 * 119.99845 * 359.80523 * 25 24 23 27 27 C 1.38234 * 119.99743 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46809 * 55.25578 * 1 2 3 29 29 H 1.08998 * 109.47484 * 175.25722 * 1 2 3 30 30 H 1.08999 * 109.46938 * 295.26269 * 1 2 3 31 31 H 1.08996 * 109.46968 * 240.00262 * 2 1 3 32 32 H 1.08991 * 109.46935 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46980 * 300.00036 * 3 2 1 34 34 H 1.08997 * 109.46637 * 59.99523 * 3 2 1 35 35 H 1.09006 * 109.47226 * 303.29417 * 4 2 1 36 36 H 1.09004 * 109.46715 * 183.29947 * 4 2 1 37 37 H 1.00901 * 111.00165 * 211.43490 * 7 5 4 38 38 H 1.08996 * 109.45922 * 326.05859 * 8 7 5 39 39 H 1.08998 * 109.49882 * 301.32978 * 9 8 7 40 40 H 1.09000 * 109.49647 * 61.43043 * 9 8 7 41 41 H 1.09000 * 109.59057 * 185.57624 * 10 9 8 42 42 H 1.09008 * 109.58211 * 65.15272 * 10 9 8 43 43 H 0.96999 * 119.99982 * 180.02562 * 15 14 12 44 44 H 1.08993 * 109.58448 * 186.60370 * 20 11 10 45 45 H 1.09004 * 109.70229 * 66.25005 * 20 11 10 46 46 H 1.08996 * 109.49695 * 298.57788 * 21 8 7 47 47 H 1.09003 * 109.49194 * 58.64803 * 21 8 7 48 48 H 1.07997 * 120.00060 * 359.97438 * 23 22 5 49 49 H 1.08000 * 119.99813 * 180.27048 * 24 23 22 50 50 H 1.07996 * 120.00163 * 179.83181 * 25 24 23 51 51 H 1.08000 * 119.99733 * 180.02562 * 26 25 24 52 52 H 1.08001 * 119.99638 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5988 -2.1857 1.2085 6 1 0.5145 -2.2358 1.1101 7 7 2.0093 -2.8555 2.4497 8 6 0.9880 -2.7008 3.4941 9 6 -0.0601 -3.8065 3.3496 10 6 -1.1419 -3.6221 4.4185 11 7 -0.4986 -3.5693 5.7382 12 6 -0.9021 -4.4051 6.7451 13 1 -0.2055 -4.6955 7.5177 14 6 -2.2065 -4.8792 6.7727 15 7 -3.1637 -4.2076 6.1687 16 14 -2.6031 -6.4705 7.6671 17 1 -2.8265 -6.1863 9.1075 18 1 -3.8294 -7.0729 7.0854 19 1 -1.4686 -7.4173 7.5195 20 6 0.5857 -2.6023 5.9575 21 6 1.6481 -2.7982 4.8714 22 6 2.2424 -2.8715 0.0310 23 6 3.5542 -3.2994 0.1127 24 6 4.1431 -3.9326 -0.9659 25 6 3.4231 -4.1295 -2.1294 26 6 2.1127 -3.6970 -2.2128 27 6 1.5224 -3.0679 -1.1327 28 1 -0.3633 0.5857 -0.8445 29 1 -0.3634 -1.0241 -0.0850 30 1 -0.3633 0.4386 0.9294 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6292 -0.2426 2.1383 36 1 3.1284 -0.6703 1.2793 37 1 2.2129 -3.8298 2.2846 38 1 0.5066 -1.7284 3.3900 39 1 -0.5134 -3.7511 2.3599 40 1 0.4164 -4.7784 3.4781 41 1 -1.8367 -4.4614 4.3839 42 1 -1.6802 -2.6918 4.2368 43 1 -4.0753 -4.5387 6.1883 44 1 1.0308 -2.7686 6.9383 45 1 0.1901 -1.5880 5.9030 46 1 2.1084 -3.7796 4.9856 47 1 2.4111 -2.0253 4.9645 48 1 4.1181 -3.1419 1.0202 49 1 5.1667 -4.2708 -0.9006 50 1 3.8840 -4.6217 -2.9729 51 1 1.5500 -3.8512 -3.1217 52 1 0.4989 -2.7296 -1.1981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610511979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:22 Heat of formation + Delta-G solvation = 23.952619 kcal Electronic energy + Delta-G solvation = -27493.224365 eV Core-core repulsion = 24070.895065 eV Total energy + Delta-G solvation = -3422.329300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.92702 -38.02507 -36.73056 -34.74005 -32.65845 -31.11387 -30.92996 -29.83827 -29.07779 -27.60030 -27.21042 -24.72999 -23.43360 -22.62968 -22.08229 -21.36353 -20.98107 -19.43597 -19.17591 -17.09325 -16.62374 -15.74947 -15.42600 -15.23661 -14.81063 -14.52479 -14.31365 -13.98057 -13.63055 -13.50981 -13.38831 -13.30771 -13.22836 -12.93079 -12.77739 -12.42503 -12.26022 -12.17810 -11.99673 -11.66423 -11.36220 -11.20191 -11.10001 -10.94895 -10.87058 -10.72540 -10.67530 -10.61773 -10.38704 -10.34014 -10.17172 -9.98089 -9.64238 -9.50386 -8.96562 -8.75542 -8.43732 -8.02307 -6.67055 -5.79540 -3.15983 1.28520 1.34684 3.38623 3.46047 3.49560 3.72428 4.28490 4.52750 4.61563 4.84379 4.91004 4.92562 4.96039 5.04726 5.09217 5.31256 5.36245 5.43172 5.45795 5.52244 5.56125 5.59558 5.60108 5.69063 5.73679 5.78884 5.82955 5.87947 5.95636 5.99439 6.02846 6.04476 6.16332 6.18161 6.33521 6.35559 6.37501 6.42281 6.44437 6.45677 6.57813 6.58790 6.69230 6.70376 6.86488 6.94562 7.03928 7.30435 7.42027 7.54855 7.69435 7.83650 8.45367 9.21761 9.87566 10.45239 11.29256 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.003299 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.058613 B = 8485.962200 C = 9165.263269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.095 4.095 5 C 0.124 3.876 6 H 0.057 0.943 7 N -0.682 5.682 8 C 0.097 3.903 9 C -0.166 4.166 10 C 0.178 3.822 11 N -0.591 5.591 12 C -0.256 4.256 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.145 3.855 21 C -0.116 4.116 22 C -0.078 4.078 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.114 4.114 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.339 0.661 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.054 0.946 45 H 0.015 0.985 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.130 0.870 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 5.921 -17.173 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.133 4.133 5 C 0.014 3.986 6 H 0.075 0.925 7 N -0.312 5.312 8 C -0.013 4.013 9 C -0.206 4.206 10 C 0.051 3.949 11 N -0.314 5.314 12 C -0.386 4.386 13 H 0.082 0.918 14 C -0.194 4.194 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.018 3.982 21 C -0.156 4.156 22 C -0.079 4.079 23 C -0.121 4.121 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.132 4.132 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.148 0.852 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.392 6.424 -16.933 21.945 hybrid contribution -1.079 -1.510 0.008 1.856 sum 11.313 4.914 -16.925 20.943 Atomic orbital electron populations 1.21917 0.95413 1.01668 1.01721 1.21146 0.95773 0.95998 0.98803 1.21813 1.00755 0.96145 1.01509 1.21600 1.01145 0.93225 0.97308 1.20529 0.97366 0.93834 0.86845 0.92538 1.60817 1.44363 1.19171 1.06867 1.21527 0.90205 0.98320 0.91206 1.22830 0.99577 0.98716 0.99511 1.20595 0.91711 1.00190 0.82387 1.44059 1.39018 1.39900 1.08377 1.19118 0.93379 1.20528 1.05548 0.91758 1.24955 0.95236 0.99569 0.99642 1.70127 0.99681 1.36675 1.47478 0.86454 0.77438 0.84495 0.79291 1.21295 1.21597 1.20566 1.20919 0.89151 0.92292 0.95819 1.21969 0.98271 1.01063 0.94284 1.20029 0.94476 0.98133 0.95242 1.21102 0.94637 0.97566 0.98792 1.21165 0.99867 0.99509 0.93576 1.21116 0.94779 1.00591 0.97982 1.21090 0.95356 0.99100 0.98550 1.21081 0.99807 0.99217 0.93121 0.93062 0.92648 0.92503 0.91183 0.92908 0.93050 0.92694 0.91482 0.91550 0.84215 0.91307 0.93868 0.92562 0.90502 0.96510 0.93718 0.92766 0.96675 0.92548 0.92625 0.85203 0.86320 0.86522 0.86387 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.79 37.16 0.33 -1.21 16 2 C -0.10 -1.00 2.71 -90.62 -0.25 -1.24 16 3 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 4 C -0.09 -1.09 4.41 -26.73 -0.12 -1.21 16 5 C 0.12 1.53 1.91 -68.87 -0.13 1.40 16 6 H 0.06 0.77 5.34 -51.93 -0.28 0.49 16 7 N -0.68 -9.45 5.49 -100.92 -0.55 -10.01 16 8 C 0.10 1.60 2.23 -67.67 -0.15 1.45 16 9 C -0.17 -3.13 5.31 -26.61 -0.14 -3.28 16 10 C 0.18 4.24 5.36 -3.71 -0.02 4.22 16 11 N -0.59 -14.89 2.99 -172.31 -0.51 -15.41 16 12 C -0.26 -7.12 9.53 -15.06 -0.14 -7.26 16 13 H 0.06 1.76 7.94 -52.49 -0.42 1.35 16 14 C 0.01 0.14 4.71 -17.43 -0.08 0.06 16 15 N -0.90 -26.27 11.65 55.49 0.65 -25.62 16 16 Si 0.89 21.79 29.62 -169.99 -5.03 16.75 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 21 C -0.12 -2.05 5.69 -26.61 -0.15 -2.20 16 22 C -0.08 -0.90 3.94 -104.62 -0.41 -1.32 16 23 C -0.10 -1.14 8.96 -39.58 -0.35 -1.50 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.11 -1.24 8.65 -39.58 -0.34 -1.58 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.58 5.96 -51.93 -0.31 0.27 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.74 6.52 -51.93 -0.34 0.40 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.34 4.78 7.63 -39.29 -0.30 4.48 16 38 H 0.07 1.20 7.29 -51.93 -0.38 0.82 16 39 H 0.04 0.76 7.53 -51.93 -0.39 0.37 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 2.06 6.26 -51.93 -0.33 1.73 16 42 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.13 1.43 7.73 -52.49 -0.41 1.02 16 49 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 52 H 0.12 1.21 7.33 -52.49 -0.38 0.83 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -28.95 396.21 -11.72 -40.67 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -9.39 Total: 4.12 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.84 Total: -16.47 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.42 Total: -51.03 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.95 -11.72 -40.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610511979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.619 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds