Wall clock time and date at job start Tue Mar 31 2020 11:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47218 * 2 1 4 4 C 1.52997 * 109.46952 * 120.00019 * 2 1 3 5 5 C 1.52998 * 109.47210 * 63.29525 * 4 2 1 6 6 H 1.08993 * 109.47011 * 303.81874 * 5 4 2 7 7 N 1.46899 * 109.47081 * 183.81786 * 5 4 2 8 8 C 1.46895 * 111.00141 * 87.47964 * 7 5 4 9 9 C 1.53037 * 109.44828 * 86.02185 * 8 7 5 10 10 C 1.53196 * 109.31526 * 181.37825 * 9 8 7 11 11 N 1.46919 * 108.77627 * 305.36680 * 10 9 8 12 12 C 1.36936 * 120.63382 * 233.58492 * 11 10 9 13 13 H 1.07996 * 120.00391 * 152.43923 * 12 11 10 14 14 C 1.38816 * 119.99521 * 332.43788 * 12 11 10 15 15 N 1.31619 * 120.00180 * 335.89043 * 14 12 11 16 16 Si 1.86797 * 119.99712 * 155.89129 * 14 12 11 17 17 H 1.48499 * 109.47214 * 84.98695 * 16 14 12 18 18 H 1.48498 * 109.47117 * 204.98721 * 16 14 12 19 19 H 1.48505 * 109.47065 * 324.98340 * 16 14 12 20 20 C 1.46934 * 118.73911 * 53.60531 * 11 10 9 21 21 C 1.53043 * 109.46188 * 206.08283 * 8 7 5 22 22 C 1.50699 * 109.46754 * 63.82019 * 5 4 2 23 23 C 1.38230 * 120.00202 * 79.72918 * 22 5 4 24 24 C 1.38239 * 119.99881 * 179.78265 * 23 22 5 25 25 C 1.38236 * 120.00150 * 0.44554 * 24 23 22 26 26 C 1.38243 * 119.99845 * 359.80523 * 25 24 23 27 27 C 1.38234 * 119.99743 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46809 * 55.25578 * 1 2 3 29 29 H 1.08998 * 109.47484 * 175.25722 * 1 2 3 30 30 H 1.08999 * 109.46938 * 295.26269 * 1 2 3 31 31 H 1.08996 * 109.46968 * 240.00262 * 2 1 3 32 32 H 1.08991 * 109.46935 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46980 * 300.00036 * 3 2 1 34 34 H 1.08997 * 109.46637 * 59.99523 * 3 2 1 35 35 H 1.09006 * 109.47226 * 303.29417 * 4 2 1 36 36 H 1.09004 * 109.46715 * 183.29947 * 4 2 1 37 37 H 1.00901 * 111.00165 * 211.43490 * 7 5 4 38 38 H 1.08996 * 109.45922 * 326.05859 * 8 7 5 39 39 H 1.08998 * 109.49882 * 301.32978 * 9 8 7 40 40 H 1.09000 * 109.49647 * 61.43043 * 9 8 7 41 41 H 1.09000 * 109.59057 * 185.57624 * 10 9 8 42 42 H 1.09008 * 109.58211 * 65.15272 * 10 9 8 43 43 H 0.96999 * 119.99982 * 180.02562 * 15 14 12 44 44 H 1.08993 * 109.58448 * 186.60370 * 20 11 10 45 45 H 1.09004 * 109.70229 * 66.25005 * 20 11 10 46 46 H 1.08996 * 109.49695 * 298.57788 * 21 8 7 47 47 H 1.09003 * 109.49194 * 58.64803 * 21 8 7 48 48 H 1.07997 * 120.00060 * 359.97438 * 23 22 5 49 49 H 1.08000 * 119.99813 * 180.27048 * 24 23 22 50 50 H 1.07996 * 120.00163 * 179.83181 * 25 24 23 51 51 H 1.08000 * 119.99733 * 180.02562 * 26 25 24 52 52 H 1.08001 * 119.99638 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5988 -2.1857 1.2085 6 1 0.5145 -2.2358 1.1101 7 7 2.0093 -2.8555 2.4497 8 6 0.9880 -2.7008 3.4941 9 6 -0.0601 -3.8065 3.3496 10 6 -1.1419 -3.6221 4.4185 11 7 -0.4986 -3.5693 5.7382 12 6 -0.9021 -4.4051 6.7451 13 1 -0.2055 -4.6955 7.5177 14 6 -2.2065 -4.8792 6.7727 15 7 -3.1637 -4.2076 6.1687 16 14 -2.6031 -6.4705 7.6671 17 1 -2.8265 -6.1863 9.1075 18 1 -3.8294 -7.0729 7.0854 19 1 -1.4686 -7.4173 7.5195 20 6 0.5857 -2.6023 5.9575 21 6 1.6481 -2.7982 4.8714 22 6 2.2424 -2.8715 0.0310 23 6 3.5542 -3.2994 0.1127 24 6 4.1431 -3.9326 -0.9659 25 6 3.4231 -4.1295 -2.1294 26 6 2.1127 -3.6970 -2.2128 27 6 1.5224 -3.0679 -1.1327 28 1 -0.3633 0.5857 -0.8445 29 1 -0.3634 -1.0241 -0.0850 30 1 -0.3633 0.4386 0.9294 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6292 -0.2426 2.1383 36 1 3.1284 -0.6703 1.2793 37 1 2.2129 -3.8298 2.2846 38 1 0.5066 -1.7284 3.3900 39 1 -0.5134 -3.7511 2.3599 40 1 0.4164 -4.7784 3.4781 41 1 -1.8367 -4.4614 4.3839 42 1 -1.6802 -2.6918 4.2368 43 1 -4.0753 -4.5387 6.1883 44 1 1.0308 -2.7686 6.9383 45 1 0.1901 -1.5880 5.9030 46 1 2.1084 -3.7796 4.9856 47 1 2.4111 -2.0253 4.9645 48 1 4.1181 -3.1419 1.0202 49 1 5.1667 -4.2708 -0.9006 50 1 3.8840 -4.6217 -2.9729 51 1 1.5500 -3.8512 -3.1217 52 1 0.4989 -2.7296 -1.1981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610511979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:21 Heat of formation + Delta-G solvation = 10.443970 kcal Electronic energy + Delta-G solvation = -27493.810144 eV Core-core repulsion = 24070.895065 eV Total energy + Delta-G solvation = -3422.915079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.85750 -39.41453 -37.80348 -36.11302 -34.23050 -32.55247 -31.75210 -31.54060 -30.40057 -28.70815 -28.02525 -26.51779 -24.52533 -23.78469 -23.53266 -22.78097 -21.93913 -20.81643 -20.30498 -18.81353 -17.72552 -16.92587 -16.62146 -16.39800 -16.17173 -15.77796 -15.38174 -15.28354 -15.22910 -14.79469 -14.74079 -14.48553 -14.23828 -14.16172 -13.91631 -13.75839 -13.36068 -13.12643 -13.03889 -13.00337 -12.90813 -12.58425 -12.54922 -12.40586 -12.19761 -12.01026 -11.89585 -11.87079 -11.78629 -11.66737 -11.49226 -11.36002 -11.26221 -11.13176 -10.54024 -9.74451 -9.56829 -9.28887 -8.71972 -7.91608 -5.31511 0.49303 0.56709 1.44303 1.46752 1.56466 2.50483 2.92588 3.13411 3.24324 3.67674 3.70837 3.98001 4.01686 4.09901 4.12642 4.15612 4.19693 4.23866 4.35540 4.41626 4.42504 4.52512 4.66141 4.68651 4.70926 4.77351 4.81394 4.82185 4.82936 4.93611 4.96317 5.01464 5.03355 5.07990 5.17995 5.20426 5.23037 5.25152 5.26504 5.34526 5.37609 5.44139 5.47484 5.55429 5.61747 5.63195 5.66811 5.68940 5.74489 6.16003 6.21131 6.35762 6.49998 7.11895 7.84583 8.37516 9.15072 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.003299 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.058613 B = 8485.962200 C = 9165.263269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.089 4.089 5 C 0.128 3.872 6 H 0.044 0.956 7 N -0.671 5.671 8 C 0.110 3.890 9 C -0.149 4.149 10 C 0.186 3.814 11 N -0.608 5.608 12 C -0.269 4.269 13 H 0.065 0.935 14 C -0.046 4.046 15 N -0.930 5.930 16 Si 0.960 3.040 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.273 1.273 20 C 0.141 3.859 21 C -0.102 4.102 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.125 4.125 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.341 0.659 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.042 0.958 42 H -0.005 1.005 43 H 0.250 0.750 44 H 0.054 0.946 45 H 0.011 0.989 46 H 0.052 0.948 47 H 0.079 0.921 48 H 0.128 0.872 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.137 0.863 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.038 5.582 -18.670 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.201 4.201 4 C -0.127 4.127 5 C 0.019 3.981 6 H 0.062 0.938 7 N -0.300 5.300 8 C 0.000 4.000 9 C -0.189 4.189 10 C 0.059 3.941 11 N -0.332 5.332 12 C -0.399 4.399 13 H 0.083 0.917 14 C -0.242 4.242 15 N -0.575 5.575 16 Si 0.788 3.212 17 H -0.208 1.208 18 H -0.218 1.218 19 H -0.198 1.198 20 C 0.015 3.985 21 C -0.142 4.142 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.146 0.854 49 H 0.155 0.845 50 H 0.158 0.842 51 H 0.155 0.845 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.271 6.096 -18.437 24.099 hybrid contribution -1.627 -1.363 0.438 2.168 sum 12.644 4.733 -17.999 22.499 Atomic orbital electron populations 1.21907 0.95586 1.01435 1.01705 1.21079 0.95530 0.96493 0.97958 1.21799 1.01015 0.95373 1.01865 1.21539 1.00986 0.92685 0.97483 1.20495 0.96730 0.94319 0.86566 0.93781 1.60781 1.42716 1.19397 1.07138 1.21274 0.89970 0.96892 0.91836 1.22621 0.98660 0.99418 0.98241 1.20397 0.92511 0.97568 0.83621 1.44328 1.39787 1.40697 1.08392 1.19453 0.93527 1.20945 1.06009 0.91726 1.25712 0.95111 1.02313 1.01055 1.70256 0.99784 1.38092 1.49366 0.85419 0.77038 0.80632 0.78151 1.20763 1.21842 1.19788 1.21070 0.88936 0.91146 0.97347 1.21783 0.97381 1.01614 0.93372 1.19930 0.94892 0.99030 0.95079 1.21163 0.94493 0.98145 0.99308 1.21432 1.00838 0.98944 0.93306 1.21447 0.94634 0.99980 0.98546 1.21370 0.95809 0.98473 0.98894 1.21197 1.00040 0.99699 0.93390 0.91852 0.93231 0.93504 0.91156 0.92497 0.92038 0.93016 0.92811 0.91556 0.84029 0.91905 0.92589 0.93050 0.93970 0.98698 0.94104 0.92765 0.97055 0.92902 0.90274 0.85398 0.84454 0.84214 0.84528 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.79 71.98 0.63 -2.32 16 2 C -0.09 -1.76 2.71 -10.79 -0.03 -1.79 16 3 C -0.14 -2.42 9.19 71.98 0.66 -1.76 16 4 C -0.09 -1.97 4.41 30.59 0.13 -1.84 16 5 C 0.13 3.06 1.91 44.17 0.08 3.14 16 6 H 0.04 1.18 5.34 -2.39 -0.01 1.17 16 7 N -0.67 -17.80 5.49 -473.20 -2.60 -20.39 16 8 C 0.11 3.59 2.23 44.94 0.10 3.69 16 9 C -0.15 -5.65 5.31 30.67 0.16 -5.48 16 10 C 0.19 9.12 5.36 86.37 0.46 9.59 16 11 N -0.61 -31.26 2.99 -699.08 -2.09 -33.34 16 12 C -0.27 -15.18 9.53 84.03 0.80 -14.38 16 13 H 0.07 3.56 7.94 -2.91 -0.02 3.54 16 14 C -0.05 -2.61 4.71 84.86 0.40 -2.21 16 15 N -0.93 -56.08 11.65 21.65 0.25 -55.83 16 16 Si 0.96 45.43 29.62 68.60 2.03 47.46 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 C 0.14 5.97 6.52 86.36 0.56 6.54 16 21 C -0.10 -3.49 5.69 30.67 0.17 -3.31 16 22 C -0.09 -1.93 3.94 -19.87 -0.08 -2.01 16 23 C -0.11 -2.31 8.96 22.27 0.20 -2.11 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 26 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 27 C -0.12 -2.54 8.65 22.27 0.19 -2.35 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.03 5.96 -2.39 -0.01 1.01 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.38 6.52 -2.39 -0.02 1.36 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.90 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 1.33 7.60 -2.38 -0.02 1.32 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.34 9.12 7.63 -89.69 -0.68 8.44 16 38 H 0.06 2.16 7.29 -2.39 -0.02 2.15 16 39 H 0.06 1.97 7.53 -2.39 -0.02 1.95 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.04 2.34 6.26 -2.39 -0.01 2.33 16 42 H -0.01 -0.26 8.14 -2.38 -0.02 -0.28 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.13 2.61 7.73 -2.91 -0.02 2.59 16 49 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 50 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 51 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 52 H 0.12 2.33 7.33 -2.91 -0.02 2.31 16 Total: -1.00 -62.76 396.21 2.92 -59.84 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.18 Total: 24.76 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 5.13 Total: -22.50 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.43 Total: -109.57 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -62.76 2.92 -59.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610511979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.289 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds