Wall clock time and date at job start Tue Mar 31 2020 11:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47589 * 2 1 4 4 C 1.53002 * 109.47640 * 178.52541 * 3 2 1 5 5 H 1.09001 * 109.46671 * 306.46043 * 4 3 2 6 6 C 1.53000 * 109.47049 * 186.46038 * 4 3 2 7 7 C 1.50698 * 109.46689 * 174.99745 * 6 4 3 8 8 C 1.38233 * 120.00305 * 269.72360 * 7 6 4 9 9 C 1.38239 * 119.99971 * 179.76411 * 8 7 6 10 10 C 1.38230 * 120.00078 * 0.51709 * 9 8 7 11 11 C 1.38240 * 119.99899 * 359.73821 * 10 9 8 12 12 C 1.38235 * 120.00045 * 0.02562 * 11 10 9 13 13 N 1.46900 * 109.46873 * 66.45691 * 4 3 2 14 14 C 1.46894 * 111.00157 * 258.36793 * 13 4 3 15 15 C 1.53035 * 109.46423 * 273.53584 * 14 13 4 16 16 C 1.53194 * 109.31425 * 178.60402 * 15 14 13 17 17 N 1.46923 * 108.76608 * 54.65270 * 16 15 14 18 18 C 1.36939 * 120.63030 * 126.36165 * 17 16 15 19 19 H 1.08001 * 119.99788 * 328.50272 * 18 17 16 20 20 C 1.38811 * 119.99863 * 148.49893 * 18 17 16 21 21 N 1.31620 * 120.00144 * 344.27092 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 164.27088 * 20 18 17 23 23 H 1.48499 * 109.47485 * 90.00072 * 22 20 18 24 24 H 1.48496 * 109.47121 * 210.00503 * 22 20 18 25 25 H 1.48500 * 109.47025 * 330.00249 * 22 20 18 26 26 C 1.46921 * 118.74109 * 306.38666 * 17 16 15 27 27 C 1.53047 * 109.45824 * 153.47824 * 14 13 4 28 28 H 1.08996 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47155 * 299.99754 * 1 2 3 30 30 H 1.09004 * 109.47101 * 59.99784 * 1 2 3 31 31 H 1.09000 * 109.47155 * 240.00246 * 2 1 3 32 32 H 1.08998 * 109.47367 * 120.00553 * 2 1 3 33 33 H 1.09007 * 109.46806 * 58.52468 * 3 2 1 34 34 H 1.09000 * 109.47196 * 298.53165 * 3 2 1 35 35 H 1.08996 * 109.47089 * 295.00121 * 6 4 3 36 36 H 1.09003 * 109.47000 * 55.00226 * 6 4 3 37 37 H 1.08003 * 120.00035 * 0.02562 * 8 7 6 38 38 H 1.08000 * 119.99834 * 180.23320 * 9 8 7 39 39 H 1.07997 * 120.00625 * 179.71986 * 10 9 8 40 40 H 1.07998 * 120.00089 * 179.97438 * 11 10 9 41 41 H 1.07995 * 120.00043 * 179.97438 * 12 11 10 42 42 H 1.00903 * 110.99563 * 22.32839 * 13 4 3 43 43 H 1.09004 * 109.45893 * 33.51260 * 14 13 4 44 44 H 1.09002 * 109.49462 * 298.57023 * 15 14 13 45 45 H 1.09002 * 109.49735 * 58.66151 * 15 14 13 46 46 H 1.09003 * 109.59468 * 294.86152 * 16 15 14 47 47 H 1.09001 * 109.70321 * 174.50589 * 16 15 14 48 48 H 0.97000 * 119.99523 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.58661 * 293.82193 * 26 17 16 50 50 H 1.08999 * 109.70933 * 173.46357 * 26 17 16 51 51 H 1.09000 * 109.49693 * 301.33850 * 27 14 13 52 52 H 1.08993 * 109.49387 * 61.40525 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5696 1.4426 0.0371 5 1 3.9127 0.8390 0.8774 6 6 4.0757 2.8773 0.1994 7 6 5.5741 2.8663 0.3592 8 6 6.1342 2.7776 1.6199 9 6 7.5087 2.7626 1.7661 10 6 8.3232 2.8471 0.6524 11 6 7.7631 2.9411 -0.6079 12 6 6.3886 2.9512 -0.7545 13 7 4.0898 0.8786 -1.2156 14 6 4.5217 -0.5128 -1.0271 15 6 5.9699 -0.5347 -0.5327 16 6 6.4053 -1.9855 -0.3041 17 7 6.1781 -2.7475 -1.5396 18 6 7.1923 -3.4686 -2.1111 19 1 8.2139 -3.1306 -2.0185 20 6 6.9074 -4.6340 -2.8092 21 7 5.7345 -5.2147 -2.6697 22 14 8.1886 -5.3782 -3.9468 23 1 9.0307 -6.3352 -3.1852 24 1 7.5093 -6.0919 -5.0578 25 1 9.0443 -4.2989 -4.5019 26 6 4.8422 -2.7207 -2.1506 27 6 4.4242 -1.2616 -2.3583 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6553 1.9639 0.8765 34 1 1.6984 1.9486 -0.9029 35 1 3.8085 3.4588 -0.6829 36 1 3.6194 3.3258 1.0820 37 1 5.4978 2.7158 2.4904 38 1 7.9463 2.6895 2.7508 39 1 9.3971 2.8399 0.7668 40 1 8.3994 3.0075 -1.4780 41 1 5.9510 3.0251 -1.7391 42 1 3.4065 0.9482 -1.9547 43 1 3.8793 -0.9958 -0.2908 44 1 6.6163 -0.0740 -1.2798 45 1 6.0431 0.0188 0.4034 46 1 5.8193 -2.4197 0.5061 47 1 7.4639 -2.0152 -0.0459 48 1 5.5353 -6.0289 -3.1580 49 1 4.1288 -3.2148 -1.4911 50 1 4.8673 -3.2339 -3.1119 51 1 3.3971 -1.2256 -2.7216 52 1 5.0849 -0.7938 -3.0881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610812936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:12 Heat of formation + Delta-G solvation = 21.340438 kcal Electronic energy + Delta-G solvation = -27917.012612 eV Core-core repulsion = 24494.570040 eV Total energy + Delta-G solvation = -3422.442573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.46228 -38.21646 -36.50060 -33.71538 -33.11970 -31.53240 -30.65193 -30.11467 -29.55712 -27.80965 -26.21773 -24.48160 -22.57683 -22.34616 -22.07472 -21.19943 -20.88915 -20.21467 -18.88330 -16.70516 -16.54863 -15.89479 -15.30254 -14.95473 -14.77918 -14.63238 -14.20631 -13.96593 -13.66502 -13.55914 -13.41406 -13.18592 -12.95655 -12.85326 -12.60486 -12.41392 -12.20965 -12.04149 -11.67568 -11.50127 -11.27365 -11.26385 -11.04578 -10.81734 -10.77270 -10.69237 -10.67869 -10.59842 -10.48027 -10.25022 -10.09906 -9.87760 -9.52588 -9.32859 -8.67672 -8.44966 -8.41761 -7.96749 -6.54718 -5.74092 -3.18463 1.59283 1.66201 3.40043 3.46846 3.49938 4.00566 4.40995 4.54410 4.66731 4.92324 4.98253 5.04516 5.12854 5.21271 5.29374 5.38916 5.40336 5.44753 5.52211 5.54307 5.56690 5.66897 5.70443 5.73735 5.79186 5.80241 5.88308 5.91809 6.00185 6.06891 6.08208 6.14603 6.25409 6.28404 6.29628 6.30173 6.45147 6.61526 6.67255 6.70454 6.73765 6.75176 6.75905 6.90774 6.95620 7.16642 7.24830 7.41678 7.50094 7.68905 7.77659 7.86090 8.53351 9.28057 9.91047 10.50505 11.34608 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.004510 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.611585 B = 6206.689872 C = 8246.380422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.141 4.141 4 C 0.092 3.908 5 H 0.072 0.928 6 C -0.068 4.068 7 C -0.062 4.062 8 C -0.126 4.126 9 C -0.124 4.124 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.084 4.084 13 N -0.677 5.677 14 C 0.100 3.900 15 C -0.109 4.109 16 C 0.145 3.855 17 N -0.589 5.589 18 C -0.250 4.250 19 H 0.062 0.938 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.178 3.822 27 C -0.141 4.141 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.334 0.666 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.010 0.990 47 H 0.051 0.949 48 H 0.252 0.748 49 H 0.015 0.985 50 H 0.080 0.920 51 H 0.042 0.958 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 17.627 6.653 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.180 4.180 4 C -0.018 4.018 5 H 0.090 0.910 6 C -0.106 4.106 7 C -0.062 4.062 8 C -0.144 4.144 9 C -0.142 4.142 10 C -0.146 4.146 11 C -0.139 4.139 12 C -0.102 4.102 13 N -0.308 5.308 14 C -0.009 4.009 15 C -0.149 4.149 16 C 0.018 3.982 17 N -0.312 5.312 18 C -0.380 4.380 19 H 0.080 0.920 20 C -0.194 4.194 21 N -0.548 5.548 22 Si 0.729 3.271 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.052 3.948 27 C -0.181 4.181 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.033 0.967 50 H 0.098 0.902 51 H 0.061 0.939 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.478 17.719 6.658 19.706 hybrid contribution -0.224 -1.065 -0.497 1.197 sum -5.702 16.654 6.162 18.650 Atomic orbital electron populations 1.21751 0.96007 1.01602 1.01334 1.21612 0.95715 0.96718 1.02618 1.22281 0.96467 0.97071 1.02181 1.21601 0.91451 0.95030 0.93740 0.90996 1.20639 0.91575 0.96804 1.01564 1.19651 0.95289 0.98411 0.92811 1.20963 0.94900 1.01780 0.96760 1.21000 0.93755 1.01131 0.98336 1.21043 0.99372 1.01222 0.92934 1.21129 0.95357 1.00376 0.97041 1.20950 0.92862 0.98008 0.98399 1.60648 1.43533 1.20454 1.06164 1.21501 0.96327 0.85899 0.97197 1.21940 0.95340 0.97988 0.99629 1.20935 0.98172 0.89985 0.89104 1.43972 1.08618 1.55161 1.23459 1.19142 0.88394 1.01475 1.29020 0.92036 1.25106 0.96966 0.95710 1.01642 1.70029 1.22308 1.19218 1.43205 0.86346 0.81058 0.79005 0.80663 1.21404 1.21620 1.20451 1.20632 0.85685 0.89652 0.98876 1.22402 0.99203 1.00326 0.96137 0.92760 0.93087 0.92940 0.91509 0.92077 0.91832 0.91763 0.91135 0.91663 0.86962 0.86843 0.86836 0.86678 0.86128 0.84748 0.94485 0.92077 0.93660 0.97163 0.93062 0.93756 0.96732 0.90152 0.93942 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.13 -1.42 4.81 -26.74 -0.13 -1.55 16 3 C -0.14 -1.38 4.53 -26.73 -0.12 -1.50 16 4 C 0.09 1.05 1.99 -67.71 -0.13 0.92 16 5 H 0.07 0.95 7.25 -51.93 -0.38 0.58 16 6 C -0.07 -0.71 5.03 -27.88 -0.14 -0.85 16 7 C -0.06 -0.75 4.89 -104.62 -0.51 -1.26 16 8 C -0.13 -1.51 9.70 -39.58 -0.38 -1.89 16 9 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 10 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 11 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 12 C -0.08 -1.08 9.31 -39.58 -0.37 -1.45 16 13 N -0.68 -8.94 5.28 -99.70 -0.53 -9.46 16 14 C 0.10 1.65 1.45 -67.67 -0.10 1.55 16 15 C -0.11 -2.01 5.59 -26.61 -0.15 -2.16 16 16 C 0.14 3.20 6.52 -3.71 -0.02 3.17 16 17 N -0.59 -15.06 2.97 -172.32 -0.51 -15.58 16 18 C -0.25 -7.03 9.55 -15.06 -0.14 -7.17 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 21 N -0.90 -26.57 11.38 55.49 0.63 -25.94 16 22 Si 0.90 21.99 29.58 -169.99 -5.03 16.97 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.18 4.27 5.27 -3.71 -0.02 4.25 16 27 C -0.14 -2.66 5.35 -26.61 -0.14 -2.80 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.84 6.70 -51.93 -0.35 0.50 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.60 8.00 -51.93 -0.42 0.18 16 35 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.33 4.20 7.60 -39.29 -0.30 3.90 16 43 H 0.04 0.65 6.30 -51.93 -0.33 0.32 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.04 0.80 7.79 -51.93 -0.40 0.39 16 46 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 2.16 6.30 -51.93 -0.33 1.83 16 51 H 0.04 0.72 8.10 -51.93 -0.42 0.29 16 52 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -29.29 401.38 -12.30 -41.59 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -9.64 Total: 3.96 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.28 Total: -17.59 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.41 Total: -50.98 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.29 -12.30 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.926 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds