Wall clock time and date at job start Tue Mar 31 2020 11:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47589 * 2 1 4 4 C 1.53002 * 109.47640 * 178.52541 * 3 2 1 5 5 H 1.09001 * 109.46671 * 306.46043 * 4 3 2 6 6 C 1.53000 * 109.47049 * 186.46038 * 4 3 2 7 7 C 1.50698 * 109.46689 * 174.99745 * 6 4 3 8 8 C 1.38233 * 120.00305 * 269.72360 * 7 6 4 9 9 C 1.38239 * 119.99971 * 179.76411 * 8 7 6 10 10 C 1.38230 * 120.00078 * 0.51709 * 9 8 7 11 11 C 1.38240 * 119.99899 * 359.73821 * 10 9 8 12 12 C 1.38235 * 120.00045 * 0.02562 * 11 10 9 13 13 N 1.46900 * 109.46873 * 66.45691 * 4 3 2 14 14 C 1.46894 * 111.00157 * 258.36793 * 13 4 3 15 15 C 1.53035 * 109.46423 * 273.53584 * 14 13 4 16 16 C 1.53194 * 109.31425 * 178.60402 * 15 14 13 17 17 N 1.46923 * 108.76608 * 54.65270 * 16 15 14 18 18 C 1.36939 * 120.63030 * 126.36165 * 17 16 15 19 19 H 1.08001 * 119.99788 * 328.50272 * 18 17 16 20 20 C 1.38811 * 119.99863 * 148.49893 * 18 17 16 21 21 N 1.31620 * 120.00144 * 344.27092 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 164.27088 * 20 18 17 23 23 H 1.48499 * 109.47485 * 90.00072 * 22 20 18 24 24 H 1.48496 * 109.47121 * 210.00503 * 22 20 18 25 25 H 1.48500 * 109.47025 * 330.00249 * 22 20 18 26 26 C 1.46921 * 118.74109 * 306.38666 * 17 16 15 27 27 C 1.53047 * 109.45824 * 153.47824 * 14 13 4 28 28 H 1.08996 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47155 * 299.99754 * 1 2 3 30 30 H 1.09004 * 109.47101 * 59.99784 * 1 2 3 31 31 H 1.09000 * 109.47155 * 240.00246 * 2 1 3 32 32 H 1.08998 * 109.47367 * 120.00553 * 2 1 3 33 33 H 1.09007 * 109.46806 * 58.52468 * 3 2 1 34 34 H 1.09000 * 109.47196 * 298.53165 * 3 2 1 35 35 H 1.08996 * 109.47089 * 295.00121 * 6 4 3 36 36 H 1.09003 * 109.47000 * 55.00226 * 6 4 3 37 37 H 1.08003 * 120.00035 * 0.02562 * 8 7 6 38 38 H 1.08000 * 119.99834 * 180.23320 * 9 8 7 39 39 H 1.07997 * 120.00625 * 179.71986 * 10 9 8 40 40 H 1.07998 * 120.00089 * 179.97438 * 11 10 9 41 41 H 1.07995 * 120.00043 * 179.97438 * 12 11 10 42 42 H 1.00903 * 110.99563 * 22.32839 * 13 4 3 43 43 H 1.09004 * 109.45893 * 33.51260 * 14 13 4 44 44 H 1.09002 * 109.49462 * 298.57023 * 15 14 13 45 45 H 1.09002 * 109.49735 * 58.66151 * 15 14 13 46 46 H 1.09003 * 109.59468 * 294.86152 * 16 15 14 47 47 H 1.09001 * 109.70321 * 174.50589 * 16 15 14 48 48 H 0.97000 * 119.99523 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.58661 * 293.82193 * 26 17 16 50 50 H 1.08999 * 109.70933 * 173.46357 * 26 17 16 51 51 H 1.09000 * 109.49693 * 301.33850 * 27 14 13 52 52 H 1.08993 * 109.49387 * 61.40525 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5696 1.4426 0.0371 5 1 3.9127 0.8390 0.8774 6 6 4.0757 2.8773 0.1994 7 6 5.5741 2.8663 0.3592 8 6 6.1342 2.7776 1.6199 9 6 7.5087 2.7626 1.7661 10 6 8.3232 2.8471 0.6524 11 6 7.7631 2.9411 -0.6079 12 6 6.3886 2.9512 -0.7545 13 7 4.0898 0.8786 -1.2156 14 6 4.5217 -0.5128 -1.0271 15 6 5.9699 -0.5347 -0.5327 16 6 6.4053 -1.9855 -0.3041 17 7 6.1781 -2.7475 -1.5396 18 6 7.1923 -3.4686 -2.1111 19 1 8.2139 -3.1306 -2.0185 20 6 6.9074 -4.6340 -2.8092 21 7 5.7345 -5.2147 -2.6697 22 14 8.1886 -5.3782 -3.9468 23 1 9.0307 -6.3352 -3.1852 24 1 7.5093 -6.0919 -5.0578 25 1 9.0443 -4.2989 -4.5019 26 6 4.8422 -2.7207 -2.1506 27 6 4.4242 -1.2616 -2.3583 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6553 1.9639 0.8765 34 1 1.6984 1.9486 -0.9029 35 1 3.8085 3.4588 -0.6829 36 1 3.6194 3.3258 1.0820 37 1 5.4978 2.7158 2.4904 38 1 7.9463 2.6895 2.7508 39 1 9.3971 2.8399 0.7668 40 1 8.3994 3.0075 -1.4780 41 1 5.9510 3.0251 -1.7391 42 1 3.4065 0.9482 -1.9547 43 1 3.8793 -0.9958 -0.2908 44 1 6.6163 -0.0740 -1.2798 45 1 6.0431 0.0188 0.4034 46 1 5.8193 -2.4197 0.5061 47 1 7.4639 -2.0152 -0.0459 48 1 5.5353 -6.0289 -3.1580 49 1 4.1288 -3.2148 -1.4911 50 1 4.8673 -3.2339 -3.1119 51 1 3.3971 -1.2256 -2.7216 52 1 5.0849 -0.7938 -3.0881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:10 Heat of formation + Delta-G solvation = 7.791192 kcal Electronic energy + Delta-G solvation = -27917.600152 eV Core-core repulsion = 24494.570040 eV Total energy + Delta-G solvation = -3423.030112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49710 -39.45813 -37.90166 -35.17861 -34.18824 -33.16404 -31.65452 -31.54766 -31.13407 -29.15485 -27.03235 -26.38328 -23.99522 -23.49799 -23.26895 -22.70309 -21.78788 -21.21037 -20.54644 -18.66606 -17.50320 -17.03844 -16.73932 -16.27102 -15.87272 -15.78040 -15.54635 -15.32532 -15.11523 -14.93818 -14.73613 -14.45924 -14.10692 -14.05538 -13.82894 -13.69735 -13.42395 -13.12836 -13.03933 -12.82972 -12.67901 -12.52642 -12.40479 -12.37674 -12.13955 -12.08411 -11.97367 -11.79938 -11.71548 -11.55887 -11.55023 -11.36965 -11.20110 -11.02596 -10.55154 -9.61786 -9.40188 -9.06952 -8.63645 -7.88591 -5.36981 0.66589 0.72898 1.44979 1.46162 1.56490 2.50321 3.07328 3.22306 3.34002 3.70162 3.80516 4.05053 4.10052 4.12946 4.17353 4.19102 4.27479 4.34531 4.43563 4.47613 4.54580 4.57250 4.65330 4.71408 4.72355 4.76792 4.83897 4.85356 4.89302 4.95427 4.97856 5.01410 5.08578 5.12685 5.15419 5.19440 5.28627 5.30840 5.36051 5.40329 5.41376 5.42881 5.48046 5.52558 5.64898 5.74694 5.76119 5.82251 5.97074 6.31131 6.35531 6.40518 6.69335 7.15282 7.85203 8.39447 9.17720 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.004510 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.611585 B = 6206.689872 C = 8246.380422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.132 4.132 4 C 0.096 3.904 5 H 0.056 0.944 6 C -0.062 4.062 7 C -0.068 4.068 8 C -0.135 4.135 9 C -0.133 4.133 10 C -0.141 4.141 11 C -0.137 4.137 12 C -0.097 4.097 13 N -0.671 5.671 14 C 0.116 3.884 15 C -0.088 4.088 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.266 4.266 19 H 0.059 0.941 20 C -0.045 4.045 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.271 1.271 26 C 0.185 3.815 27 C -0.125 4.125 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.342 0.658 43 H 0.031 0.969 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.005 0.995 47 H 0.045 0.955 48 H 0.250 0.750 49 H -0.007 1.007 50 H 0.046 0.954 51 H 0.066 0.934 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 19.554 7.084 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C -0.170 4.170 4 C -0.014 4.014 5 H 0.074 0.926 6 C -0.099 4.099 7 C -0.068 4.068 8 C -0.153 4.153 9 C -0.151 4.151 10 C -0.159 4.159 11 C -0.155 4.155 12 C -0.115 4.115 13 N -0.302 5.302 14 C 0.007 3.993 15 C -0.127 4.127 16 C 0.016 3.984 17 N -0.330 5.330 18 C -0.396 4.396 19 H 0.077 0.923 20 C -0.241 4.241 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.196 1.196 26 C 0.059 3.941 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.162 0.838 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.023 0.977 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.011 0.989 50 H 0.065 0.935 51 H 0.084 0.916 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.157 19.680 7.103 21.810 hybrid contribution -0.003 -1.662 -0.559 1.754 sum -6.159 18.018 6.544 20.135 Atomic orbital electron populations 1.21725 0.94836 1.01517 1.02338 1.21586 0.96773 0.97311 1.01008 1.22194 0.94881 0.96338 1.03606 1.21599 0.92678 0.95214 0.91901 0.92618 1.20626 0.90437 0.95982 1.02902 1.19871 0.96241 0.98054 0.92666 1.21245 0.95234 1.01427 0.97358 1.21297 0.94045 1.00665 0.99068 1.21287 1.00284 1.01308 0.92985 1.21327 0.95743 1.00839 0.97614 1.21053 0.93082 0.98670 0.98719 1.60543 1.44435 1.17701 1.07566 1.21157 0.95122 0.87689 0.95369 1.21659 0.96191 0.95079 0.99789 1.21044 0.97879 0.91741 0.87715 1.44218 1.08607 1.55432 1.24734 1.19430 0.88989 1.01869 1.29338 0.92328 1.25851 0.98949 0.96186 1.03079 1.70177 1.24108 1.19549 1.44093 0.85318 0.78684 0.78173 0.78531 1.20997 1.21594 1.19614 1.20445 0.84797 0.92449 0.96397 1.22149 1.00125 0.96828 0.97358 0.93473 0.91880 0.92102 0.93425 0.93443 0.90083 0.90553 0.90357 0.89638 0.85299 0.85163 0.85648 0.86255 0.86284 0.83817 0.95077 0.93443 0.92442 0.97726 0.93677 0.94066 0.98943 0.93501 0.91589 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.13 -2.62 4.81 30.59 0.15 -2.47 16 3 C -0.13 -2.16 4.53 30.59 0.14 -2.02 16 4 C 0.10 1.94 1.99 44.92 0.09 2.03 16 5 H 0.06 1.35 7.25 -2.39 -0.02 1.33 16 6 C -0.06 -1.10 5.03 29.85 0.15 -0.95 16 7 C -0.07 -1.52 4.89 -19.87 -0.10 -1.62 16 8 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 9 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 10 C -0.14 -3.32 10.05 22.27 0.22 -3.10 16 11 C -0.14 -3.42 10.05 22.27 0.22 -3.19 16 12 C -0.10 -2.38 9.31 22.27 0.21 -2.18 16 13 N -0.67 -16.43 5.28 -469.33 -2.48 -18.91 16 14 C 0.12 3.76 1.45 44.94 0.07 3.83 16 15 C -0.09 -3.19 5.59 30.67 0.17 -3.02 16 16 C 0.14 6.37 6.52 86.36 0.56 6.93 16 17 N -0.61 -31.77 2.97 -699.11 -2.08 -33.85 16 18 C -0.27 -15.23 9.55 84.03 0.80 -14.42 16 19 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 20 C -0.04 -2.57 4.92 84.86 0.42 -2.16 16 21 N -0.93 -56.37 11.38 21.65 0.25 -56.12 16 22 Si 0.97 45.83 29.58 68.60 2.03 47.86 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 26 C 0.19 9.15 5.27 86.36 0.46 9.61 16 27 C -0.13 -4.70 5.35 30.67 0.16 -4.53 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.05 1.14 6.70 -2.39 -0.02 1.12 16 32 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 1.13 8.00 -2.39 -0.02 1.11 16 35 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 36 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.34 7.74 7.60 -89.69 -0.68 7.06 16 43 H 0.03 1.07 6.30 -2.38 -0.02 1.06 16 44 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 1.96 7.79 -2.39 -0.02 1.95 16 46 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.04 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 49 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 50 H 0.05 2.61 6.30 -2.39 -0.02 2.59 16 51 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 52 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -64.24 401.38 2.77 -61.47 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.18 Total: 24.07 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.87 Total: -24.52 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -4.31 Total: -108.88 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -64.24 2.77 -61.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.265 kcal (2) G-P(sol) polarization free energy of solvation -64.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds