Wall clock time and date at job start Tue Mar 31 2020 11:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47038 * 2 1 4 4 C 1.53000 * 109.47262 * 177.31195 * 3 2 1 5 5 H 1.08994 * 109.46998 * 53.36207 * 4 3 2 6 6 C 1.52999 * 109.47092 * 173.36346 * 4 3 2 7 7 C 1.50698 * 109.47090 * 184.99810 * 6 4 3 8 8 C 1.38238 * 120.00179 * 89.99810 * 7 6 4 9 9 C 1.38236 * 120.00109 * 180.02562 * 8 7 6 10 10 C 1.38234 * 119.99875 * 0.02562 * 9 8 7 11 11 C 1.38232 * 119.99979 * 0.25794 * 10 9 8 12 12 C 1.38234 * 120.00283 * 359.46641 * 11 10 9 13 13 N 1.46896 * 109.46801 * 293.36531 * 4 3 2 14 14 C 1.46898 * 111.00107 * 135.40956 * 13 4 3 15 15 C 1.53042 * 109.46118 * 278.43967 * 14 13 4 16 16 C 1.53187 * 109.31333 * 178.60023 * 15 14 13 17 17 N 1.46928 * 108.76708 * 54.65656 * 16 15 14 18 18 C 1.36930 * 120.63318 * 126.36356 * 17 16 15 19 19 H 1.08007 * 119.99852 * 206.46193 * 18 17 16 20 20 C 1.38814 * 120.00453 * 26.46172 * 18 17 16 21 21 N 1.31615 * 119.99520 * 18.72693 * 20 18 17 22 22 Si 1.86800 * 120.00243 * 198.73160 * 20 18 17 23 23 H 1.48488 * 109.47029 * 94.98276 * 22 20 18 24 24 H 1.48499 * 109.46738 * 214.98187 * 22 20 18 25 25 H 1.48500 * 109.47032 * 334.98040 * 22 20 18 26 26 C 1.46931 * 118.73611 * 306.38112 * 17 16 15 27 27 C 1.53038 * 109.46218 * 158.38206 * 14 13 4 28 28 H 1.09003 * 109.47215 * 60.00273 * 1 2 3 29 29 H 1.08999 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47093 * 300.00040 * 1 2 3 31 31 H 1.08997 * 109.47093 * 239.99960 * 2 1 3 32 32 H 1.09001 * 109.46981 * 120.00219 * 2 1 3 33 33 H 1.09000 * 109.47471 * 57.30646 * 3 2 1 34 34 H 1.09002 * 109.47168 * 297.31128 * 3 2 1 35 35 H 1.08999 * 109.47278 * 65.00233 * 6 4 3 36 36 H 1.08994 * 109.47397 * 304.99681 * 6 4 3 37 37 H 1.08000 * 119.99743 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99478 * 179.97438 * 9 8 7 39 39 H 1.08001 * 119.99701 * 179.97438 * 10 9 8 40 40 H 1.08006 * 119.99338 * 179.72468 * 11 10 9 41 41 H 1.07991 * 119.99969 * 180.27732 * 12 11 10 42 42 H 1.00900 * 111.00260 * 11.45504 * 13 4 3 43 43 H 1.09004 * 109.45902 * 38.40789 * 14 13 4 44 44 H 1.09004 * 109.49251 * 298.56300 * 15 14 13 45 45 H 1.08997 * 109.49717 * 58.65963 * 15 14 13 46 46 H 1.08991 * 109.59954 * 294.86215 * 16 15 14 47 47 H 1.09001 * 109.58536 * 174.43140 * 16 15 14 48 48 H 0.97003 * 119.99896 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.58440 * 293.82363 * 26 17 16 50 50 H 1.08998 * 109.70276 * 173.46923 * 26 17 16 51 51 H 1.08995 * 109.49945 * 301.33895 * 27 14 13 52 52 H 1.08999 * 109.49944 * 61.43395 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5685 1.4431 0.0676 5 1 3.9678 0.8172 -0.7304 6 6 4.0858 2.8733 -0.0987 7 6 5.5917 2.8594 -0.1552 8 6 6.2367 2.7311 -1.3711 9 6 7.6180 2.7179 -1.4228 10 6 8.3544 2.8324 -0.2585 11 6 7.7094 2.9548 0.9580 12 6 6.3281 2.9738 1.0092 13 7 4.0013 0.9139 1.3679 14 6 5.1061 -0.0406 1.2065 15 6 4.5440 -1.4104 0.8192 16 6 5.7008 -2.3942 0.6177 17 7 6.5301 -2.4035 1.8305 18 6 6.8150 -3.5793 2.4719 19 1 7.0316 -3.5786 3.5300 20 6 6.8256 -4.7723 1.7622 21 7 6.9315 -4.7566 0.4504 22 14 6.6892 -6.3998 2.6689 23 1 5.2702 -6.8363 2.6916 24 1 7.5110 -7.4234 1.9747 25 1 7.1783 -6.2332 4.0611 26 6 7.0475 -1.1271 2.3424 27 6 5.8756 -0.1574 2.5242 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6378 1.9701 0.8648 34 1 1.7166 1.9422 -0.9131 35 1 3.7596 3.4784 0.7471 36 1 3.6916 3.2972 -1.0222 37 1 5.6614 2.6404 -2.2806 38 1 8.1218 2.6172 -2.3727 39 1 9.4336 2.8216 -0.2988 40 1 8.2847 3.0398 1.8681 41 1 5.8243 3.0739 1.9591 42 1 3.2289 0.4929 1.8621 43 1 5.7781 0.3107 0.4234 44 1 3.8915 -1.7735 1.6133 45 1 3.9763 -1.3220 -0.1070 46 1 6.3034 -2.0804 -0.2346 47 1 5.3037 -3.3934 0.4389 48 1 6.9393 -5.5902 -0.0455 49 1 7.7600 -0.7100 1.6306 50 1 7.5406 -1.2884 3.3010 51 1 6.2558 0.8228 2.8116 52 1 5.2104 -0.5325 3.3020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610812937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:15 Heat of formation + Delta-G solvation = 22.483127 kcal Electronic energy + Delta-G solvation = -28116.182925 eV Core-core repulsion = 24693.789903 eV Total energy + Delta-G solvation = -3422.393022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.53901 -38.12913 -36.51366 -33.84407 -33.04278 -31.51160 -30.66530 -29.99585 -29.64656 -27.80764 -26.22154 -24.46978 -22.40013 -22.37392 -22.05054 -21.33748 -20.78792 -20.25984 -19.02355 -16.83535 -16.50873 -15.83481 -15.23402 -14.97953 -14.81996 -14.58552 -14.19836 -13.87587 -13.76708 -13.44898 -13.22786 -13.17658 -12.95176 -12.80591 -12.65711 -12.51159 -12.34068 -12.01457 -11.65828 -11.50371 -11.35876 -11.19708 -10.99192 -10.83605 -10.72487 -10.70303 -10.66617 -10.57725 -10.39364 -10.26452 -10.08391 -9.92691 -9.59480 -9.42687 -8.66902 -8.47734 -8.42380 -7.88255 -6.62992 -5.74332 -3.14048 1.59496 1.66075 3.39638 3.46861 3.48311 4.01096 4.45161 4.53694 4.68310 4.92802 4.98170 5.07045 5.14319 5.22919 5.32846 5.38824 5.43590 5.45768 5.52858 5.54906 5.59436 5.67151 5.72003 5.75486 5.78607 5.83734 5.90086 5.91871 6.02954 6.08066 6.11847 6.16509 6.23267 6.27567 6.29305 6.34342 6.42362 6.60404 6.64315 6.68933 6.71875 6.75685 6.78680 6.90647 6.91485 7.09345 7.25235 7.40538 7.52441 7.68614 7.80310 7.84566 8.49159 9.26224 9.91020 10.47610 11.34037 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.004682 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.865378 B = 5979.121059 C = 7768.826235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.127 4.127 4 C 0.092 3.908 5 H 0.055 0.945 6 C -0.067 4.067 7 C -0.070 4.070 8 C -0.126 4.126 9 C -0.123 4.123 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.091 4.091 13 N -0.680 5.680 14 C 0.100 3.900 15 C -0.167 4.167 16 C 0.175 3.825 17 N -0.591 5.591 18 C -0.248 4.248 19 H 0.065 0.935 20 C 0.000 4.000 21 N -0.903 5.903 22 Si 0.899 3.101 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.147 3.853 27 C -0.115 4.115 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.336 0.664 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.013 0.987 47 H 0.085 0.915 48 H 0.252 0.748 49 H 0.015 0.985 50 H 0.051 0.949 51 H 0.054 0.946 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 16.870 -2.640 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.165 4.165 4 C -0.019 4.019 5 H 0.074 0.926 6 C -0.105 4.105 7 C -0.070 4.070 8 C -0.144 4.144 9 C -0.141 4.141 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.109 4.109 13 N -0.311 5.311 14 C -0.009 4.009 15 C -0.208 4.208 16 C 0.049 3.951 17 N -0.314 5.314 18 C -0.378 4.378 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.020 3.980 27 C -0.155 4.155 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.155 0.845 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.032 0.968 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.033 0.967 50 H 0.069 0.931 51 H 0.073 0.927 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.073 17.264 -2.601 18.837 hybrid contribution -0.452 -1.845 -0.077 1.901 sum -7.525 15.419 -2.678 17.365 Atomic orbital electron populations 1.21748 0.95961 1.01554 1.01416 1.21635 0.95737 0.96806 1.02583 1.21945 0.95232 0.97025 1.02311 1.21509 0.93098 0.94982 0.92284 0.92643 1.20667 0.91197 0.97061 1.01622 1.19755 0.95524 0.98794 0.92952 1.20994 0.94498 1.01553 0.97321 1.21037 0.94122 1.00763 0.98149 1.21070 0.99567 1.00926 0.92875 1.21131 0.94850 1.00313 0.97525 1.21007 0.93367 0.98501 0.98001 1.60741 1.12086 1.40058 1.18233 1.21539 0.91854 0.89463 0.98040 1.22895 1.00578 0.97860 0.99424 1.20678 0.88763 0.97964 0.87710 1.44062 1.56212 1.01526 1.29604 1.19230 1.42543 0.84372 0.91619 0.91683 1.24979 1.01225 0.98151 0.95483 1.70060 1.53564 1.25736 1.05471 0.86305 0.77578 0.83997 0.79148 1.21614 1.21860 1.20402 1.20886 0.93005 0.86975 0.97163 1.21944 0.98409 0.98791 0.96334 0.93047 0.92827 0.92867 0.91983 0.91568 0.91385 0.91698 0.90780 0.91722 0.86853 0.86717 0.86706 0.86550 0.85890 0.84491 0.91050 0.92926 0.93792 0.96849 0.89651 0.93787 0.96735 0.93058 0.92701 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.13 -1.40 5.32 -26.73 -0.14 -1.55 16 3 C -0.13 -1.27 4.61 -26.73 -0.12 -1.39 16 4 C 0.09 1.09 1.88 -67.72 -0.13 0.96 16 5 H 0.06 0.78 6.99 -51.93 -0.36 0.41 16 6 C -0.07 -0.74 5.03 -27.88 -0.14 -0.88 16 7 C -0.07 -0.89 3.86 -104.62 -0.40 -1.30 16 8 C -0.13 -1.61 9.70 -39.58 -0.38 -1.99 16 9 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16 10 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 11 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 12 C -0.09 -1.19 8.09 -39.58 -0.32 -1.51 16 13 N -0.68 -9.12 5.56 -99.70 -0.55 -9.67 16 14 C 0.10 1.68 1.45 -67.67 -0.10 1.58 16 15 C -0.17 -3.18 4.87 -26.61 -0.13 -3.31 16 16 C 0.18 4.26 5.33 -3.71 -0.02 4.25 16 17 N -0.59 -15.05 3.00 -172.32 -0.52 -15.56 16 18 C -0.25 -6.92 9.59 -15.06 -0.14 -7.07 16 19 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 20 C 0.00 -0.01 4.89 -17.43 -0.09 -0.09 16 21 N -0.90 -26.67 11.18 55.49 0.62 -26.05 16 22 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.15 3.17 6.51 -3.71 -0.02 3.15 16 27 C -0.12 -2.06 5.69 -26.61 -0.15 -2.21 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.07 0.80 6.31 -51.93 -0.33 0.47 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 41 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.34 4.47 6.52 -39.29 -0.26 4.21 16 43 H 0.07 1.34 6.57 -51.93 -0.34 0.99 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.04 0.78 6.90 -51.93 -0.36 0.42 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 2.33 5.98 -51.93 -0.31 2.02 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 51 H 0.05 0.90 7.73 -51.93 -0.40 0.49 16 52 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -29.30 396.44 -12.12 -41.42 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -9.50 Total: 5.26 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.12 Total: -18.36 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.45 Total: -51.29 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.30 -12.12 -41.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.902 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds