Wall clock time and date at job start Tue Mar 31 2020 11:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47038 * 2 1 4 4 C 1.53000 * 109.47262 * 177.31195 * 3 2 1 5 5 H 1.08994 * 109.46998 * 53.36207 * 4 3 2 6 6 C 1.52999 * 109.47092 * 173.36346 * 4 3 2 7 7 C 1.50698 * 109.47090 * 184.99810 * 6 4 3 8 8 C 1.38238 * 120.00179 * 89.99810 * 7 6 4 9 9 C 1.38236 * 120.00109 * 180.02562 * 8 7 6 10 10 C 1.38234 * 119.99875 * 0.02562 * 9 8 7 11 11 C 1.38232 * 119.99979 * 0.25794 * 10 9 8 12 12 C 1.38234 * 120.00283 * 359.46641 * 11 10 9 13 13 N 1.46896 * 109.46801 * 293.36531 * 4 3 2 14 14 C 1.46898 * 111.00107 * 135.40956 * 13 4 3 15 15 C 1.53042 * 109.46118 * 278.43967 * 14 13 4 16 16 C 1.53187 * 109.31333 * 178.60023 * 15 14 13 17 17 N 1.46928 * 108.76708 * 54.65656 * 16 15 14 18 18 C 1.36930 * 120.63318 * 126.36356 * 17 16 15 19 19 H 1.08007 * 119.99852 * 206.46193 * 18 17 16 20 20 C 1.38814 * 120.00453 * 26.46172 * 18 17 16 21 21 N 1.31615 * 119.99520 * 18.72693 * 20 18 17 22 22 Si 1.86800 * 120.00243 * 198.73160 * 20 18 17 23 23 H 1.48488 * 109.47029 * 94.98276 * 22 20 18 24 24 H 1.48499 * 109.46738 * 214.98187 * 22 20 18 25 25 H 1.48500 * 109.47032 * 334.98040 * 22 20 18 26 26 C 1.46931 * 118.73611 * 306.38112 * 17 16 15 27 27 C 1.53038 * 109.46218 * 158.38206 * 14 13 4 28 28 H 1.09003 * 109.47215 * 60.00273 * 1 2 3 29 29 H 1.08999 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47093 * 300.00040 * 1 2 3 31 31 H 1.08997 * 109.47093 * 239.99960 * 2 1 3 32 32 H 1.09001 * 109.46981 * 120.00219 * 2 1 3 33 33 H 1.09000 * 109.47471 * 57.30646 * 3 2 1 34 34 H 1.09002 * 109.47168 * 297.31128 * 3 2 1 35 35 H 1.08999 * 109.47278 * 65.00233 * 6 4 3 36 36 H 1.08994 * 109.47397 * 304.99681 * 6 4 3 37 37 H 1.08000 * 119.99743 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99478 * 179.97438 * 9 8 7 39 39 H 1.08001 * 119.99701 * 179.97438 * 10 9 8 40 40 H 1.08006 * 119.99338 * 179.72468 * 11 10 9 41 41 H 1.07991 * 119.99969 * 180.27732 * 12 11 10 42 42 H 1.00900 * 111.00260 * 11.45504 * 13 4 3 43 43 H 1.09004 * 109.45902 * 38.40789 * 14 13 4 44 44 H 1.09004 * 109.49251 * 298.56300 * 15 14 13 45 45 H 1.08997 * 109.49717 * 58.65963 * 15 14 13 46 46 H 1.08991 * 109.59954 * 294.86215 * 16 15 14 47 47 H 1.09001 * 109.58536 * 174.43140 * 16 15 14 48 48 H 0.97003 * 119.99896 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.58440 * 293.82363 * 26 17 16 50 50 H 1.08998 * 109.70276 * 173.46923 * 26 17 16 51 51 H 1.08995 * 109.49945 * 301.33895 * 27 14 13 52 52 H 1.08999 * 109.49944 * 61.43395 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5685 1.4431 0.0676 5 1 3.9678 0.8172 -0.7304 6 6 4.0858 2.8733 -0.0987 7 6 5.5917 2.8594 -0.1552 8 6 6.2367 2.7311 -1.3711 9 6 7.6180 2.7179 -1.4228 10 6 8.3544 2.8324 -0.2585 11 6 7.7094 2.9548 0.9580 12 6 6.3281 2.9738 1.0092 13 7 4.0013 0.9139 1.3679 14 6 5.1061 -0.0406 1.2065 15 6 4.5440 -1.4104 0.8192 16 6 5.7008 -2.3942 0.6177 17 7 6.5301 -2.4035 1.8305 18 6 6.8150 -3.5793 2.4719 19 1 7.0316 -3.5786 3.5300 20 6 6.8256 -4.7723 1.7622 21 7 6.9315 -4.7566 0.4504 22 14 6.6892 -6.3998 2.6689 23 1 5.2702 -6.8363 2.6916 24 1 7.5110 -7.4234 1.9747 25 1 7.1783 -6.2332 4.0611 26 6 7.0475 -1.1271 2.3424 27 6 5.8756 -0.1574 2.5242 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6378 1.9701 0.8648 34 1 1.7166 1.9422 -0.9131 35 1 3.7596 3.4784 0.7471 36 1 3.6916 3.2972 -1.0222 37 1 5.6614 2.6404 -2.2806 38 1 8.1218 2.6172 -2.3727 39 1 9.4336 2.8216 -0.2988 40 1 8.2847 3.0398 1.8681 41 1 5.8243 3.0739 1.9591 42 1 3.2289 0.4929 1.8621 43 1 5.7781 0.3107 0.4234 44 1 3.8915 -1.7735 1.6133 45 1 3.9763 -1.3220 -0.1070 46 1 6.3034 -2.0804 -0.2346 47 1 5.3037 -3.3934 0.4389 48 1 6.9393 -5.5902 -0.0455 49 1 7.7600 -0.7100 1.6306 50 1 7.5406 -1.2884 3.3010 51 1 6.2558 0.8228 2.8116 52 1 5.2104 -0.5325 3.3020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:14 Heat of formation + Delta-G solvation = 8.683755 kcal Electronic energy + Delta-G solvation = -28116.781310 eV Core-core repulsion = 24693.789903 eV Total energy + Delta-G solvation = -3422.991408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62139 -39.41109 -37.89147 -35.28019 -34.19102 -33.12507 -31.70415 -31.45204 -31.20971 -29.18386 -27.06944 -26.36623 -23.84493 -23.45259 -23.28773 -22.90861 -21.68983 -21.34571 -20.61691 -18.77150 -17.52490 -17.00397 -16.70973 -16.35640 -15.94779 -15.72593 -15.46024 -15.33585 -15.15367 -14.87145 -14.77665 -14.31046 -14.15606 -14.12709 -13.95525 -13.71058 -13.42425 -13.19668 -13.04397 -12.79155 -12.65210 -12.59252 -12.36487 -12.35928 -12.15047 -12.06317 -11.93359 -11.84161 -11.72620 -11.59204 -11.53286 -11.36125 -11.25767 -11.04257 -10.56915 -9.65528 -9.49188 -9.08943 -8.70120 -7.88248 -5.31852 0.61593 0.67278 1.44665 1.45873 1.55523 2.50136 3.02761 3.22462 3.33590 3.69433 3.79385 4.01088 4.08795 4.12934 4.16467 4.23072 4.24883 4.31695 4.40307 4.47524 4.53668 4.57509 4.64933 4.67840 4.72481 4.76336 4.79720 4.85811 4.87853 4.92415 4.95598 5.02365 5.08807 5.13165 5.17174 5.25957 5.29058 5.32473 5.33988 5.37267 5.40308 5.41220 5.50427 5.51387 5.63200 5.71016 5.71823 5.77739 5.91531 6.28470 6.30158 6.37098 6.65654 7.13287 7.85718 8.37548 9.17916 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.004682 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.865378 B = 5979.121059 C = 7768.826235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.117 4.117 4 C 0.094 3.906 5 H 0.034 0.966 6 C -0.062 4.062 7 C -0.077 4.077 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.142 4.142 11 C -0.132 4.132 12 C -0.100 4.100 13 N -0.667 5.667 14 C 0.120 3.880 15 C -0.149 4.149 16 C 0.183 3.817 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.144 3.856 27 C -0.101 4.101 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.341 0.659 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.055 0.945 46 H -0.015 1.015 47 H 0.050 0.950 48 H 0.249 0.751 49 H 0.004 0.996 50 H 0.052 0.948 51 H 0.077 0.923 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 18.351 -1.801 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.155 4.155 4 C -0.016 4.016 5 H 0.052 0.948 6 C -0.100 4.100 7 C -0.077 4.077 8 C -0.156 4.156 9 C -0.154 4.154 10 C -0.160 4.160 11 C -0.150 4.150 12 C -0.118 4.118 13 N -0.298 5.298 14 C 0.010 3.990 15 C -0.189 4.189 16 C 0.057 3.943 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.085 0.915 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.018 3.982 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.003 0.997 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.022 0.978 50 H 0.070 0.930 51 H 0.095 0.905 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.662 18.781 -1.745 20.755 hybrid contribution 0.096 -2.275 -0.379 2.308 sum -8.566 16.506 -2.124 18.717 Atomic orbital electron populations 1.21719 0.94671 1.01590 1.02385 1.21612 0.96900 0.97152 1.01137 1.21878 0.93367 0.96591 1.03703 1.21537 0.94572 0.95057 0.90464 0.94752 1.20661 0.89981 0.96344 1.02972 1.19995 0.96578 0.98368 0.92794 1.21257 0.94739 1.01538 0.98081 1.21318 0.94564 1.00697 0.98829 1.21328 1.00419 1.01145 0.93088 1.21374 0.95261 1.00323 0.98079 1.21140 0.93493 0.98818 0.98368 1.60702 1.11504 1.38273 1.19318 1.21182 0.92512 0.88563 0.96759 1.22680 0.98391 0.97862 0.99992 1.20458 0.89777 0.97400 0.86669 1.44312 1.56847 1.02263 1.29648 1.19560 1.42007 0.85571 0.91923 0.91535 1.25750 1.01417 1.01372 0.96191 1.70219 1.54934 1.26205 1.06967 0.85268 0.77331 0.79645 0.78373 1.21322 1.22202 1.19128 1.21015 0.94393 0.86240 0.96543 1.21757 0.96897 0.98588 0.96763 0.92007 0.93333 0.91944 0.93432 0.93043 0.90145 0.90073 0.89869 0.89926 0.85602 0.85482 0.85589 0.85438 0.85444 0.83943 0.92687 0.93158 0.92605 0.99735 0.93112 0.94215 0.97820 0.92993 0.90491 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.13 -2.58 5.32 30.60 0.16 -2.41 16 3 C -0.12 -1.99 4.61 30.59 0.14 -1.85 16 4 C 0.09 2.01 1.88 44.92 0.08 2.10 16 5 H 0.03 0.91 6.99 -2.39 -0.02 0.90 16 6 C -0.06 -1.19 5.03 29.85 0.15 -1.04 16 7 C -0.08 -1.84 3.86 -19.87 -0.08 -1.92 16 8 C -0.14 -3.39 9.70 22.27 0.22 -3.18 16 9 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16 10 C -0.14 -3.60 10.05 22.27 0.22 -3.38 16 11 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 12 C -0.10 -2.48 8.09 22.27 0.18 -2.30 16 13 N -0.67 -16.50 5.56 -469.35 -2.61 -19.11 16 14 C 0.12 3.91 1.45 44.94 0.06 3.98 16 15 C -0.15 -5.67 4.87 30.67 0.15 -5.52 16 16 C 0.18 9.23 5.33 86.36 0.46 9.69 16 17 N -0.61 -31.52 3.00 -699.09 -2.10 -33.62 16 18 C -0.26 -14.73 9.59 84.04 0.81 -13.93 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 20 C -0.05 -2.99 4.89 84.86 0.41 -2.58 16 21 N -0.94 -57.03 11.18 21.65 0.24 -56.79 16 22 Si 0.97 45.81 29.59 68.60 2.03 47.84 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.14 6.25 6.51 86.36 0.56 6.81 16 27 C -0.10 -3.47 5.69 30.67 0.17 -3.30 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.07 8.04 -2.39 -0.02 1.05 16 32 H 0.05 1.16 6.31 -2.39 -0.02 1.15 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 36 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.13 2.98 8.06 -2.92 -0.02 2.95 16 42 H 0.34 8.23 6.52 -89.69 -0.58 7.64 16 43 H 0.05 2.03 6.57 -2.38 -0.02 2.02 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.06 1.98 6.90 -2.39 -0.02 1.97 16 46 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 47 H 0.05 2.89 5.98 -2.39 -0.01 2.88 16 48 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 49 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 50 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 51 H 0.08 2.35 7.73 -2.39 -0.02 2.33 16 52 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.34 396.44 2.72 -61.63 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.28 Total: 26.89 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 4.87 Total: -26.84 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.47 Total: -109.52 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -64.34 2.72 -61.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.310 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds