Wall clock time and date at job start Tue Mar 31 2020 11:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47740 * 2 1 4 4 C 1.50702 * 109.47065 * 120.00397 * 2 1 3 5 5 C 1.38233 * 120.00325 * 119.99893 * 4 2 1 6 6 C 1.38231 * 120.00067 * 179.97438 * 5 4 2 7 7 C 1.38234 * 120.00044 * 359.95698 * 6 5 4 8 8 C 1.50699 * 119.99911 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47363 * 339.99306 * 8 7 6 10 10 C 1.52995 * 109.47419 * 99.99544 * 8 7 6 11 11 N 1.46897 * 109.47013 * 219.99477 * 8 7 6 12 12 C 1.46901 * 111.00246 * 154.99727 * 11 8 7 13 13 C 1.53045 * 109.46300 * 275.02918 * 12 11 8 14 14 C 1.53191 * 109.31625 * 178.59787 * 13 12 11 15 15 N 1.46923 * 108.76304 * 54.65627 * 14 13 12 16 16 C 1.36937 * 120.63364 * 126.36151 * 15 14 13 17 17 H 1.07999 * 119.99897 * 331.86487 * 16 15 14 18 18 C 1.38810 * 120.00047 * 151.85833 * 16 15 14 19 19 N 1.31622 * 120.00305 * 343.07174 * 18 16 15 20 20 Si 1.86801 * 119.99749 * 163.06867 * 18 16 15 21 21 H 1.48500 * 109.46960 * 90.00283 * 20 18 16 22 22 H 1.48500 * 109.47214 * 210.00147 * 20 18 16 23 23 H 1.48495 * 109.47339 * 330.00188 * 20 18 16 24 24 C 1.46934 * 118.73738 * 306.38561 * 15 14 13 25 25 C 1.53038 * 109.46269 * 154.97536 * 12 11 8 26 26 C 1.38231 * 119.99996 * 0.27049 * 7 6 5 27 27 C 1.38232 * 119.99963 * 359.51974 * 26 7 6 28 28 H 1.08997 * 109.47039 * 300.00058 * 1 2 3 29 29 H 1.09002 * 109.47043 * 59.99815 * 1 2 3 30 30 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47095 * 240.00000 * 2 1 3 32 32 H 1.09002 * 109.47004 * 300.00209 * 3 2 1 33 33 H 1.09007 * 109.46827 * 59.99835 * 3 2 1 34 34 H 1.08990 * 109.47459 * 179.97438 * 3 2 1 35 35 H 1.08002 * 119.99858 * 359.97294 * 5 4 2 36 36 H 1.08008 * 119.99725 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47053 * 59.99932 * 10 8 7 38 38 H 1.09007 * 109.47450 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.47084 * 299.99680 * 10 8 7 40 40 H 1.00897 * 111.00589 * 278.95504 * 11 8 7 41 41 H 1.09004 * 109.45853 * 34.99776 * 12 11 8 42 42 H 1.08994 * 109.49660 * 298.56953 * 13 12 11 43 43 H 1.09008 * 109.49652 * 58.65939 * 13 12 11 44 44 H 1.09000 * 109.59761 * 294.87317 * 14 13 12 45 45 H 1.08991 * 109.70443 * 174.50456 * 14 13 12 46 46 H 0.96999 * 120.00050 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.58674 * 293.81725 * 24 15 14 48 48 H 1.08999 * 109.70091 * 173.46867 * 24 15 14 49 49 H 1.09004 * 109.49417 * 301.33750 * 25 12 11 50 50 H 1.09000 * 109.49862 * 61.43085 * 25 12 11 51 51 H 1.08003 * 119.99945 * 179.72894 * 26 7 6 52 52 H 1.08002 * 120.00275 * 180.25121 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8270 -1.8344 1.1036 6 6 3.2881 -2.4858 2.2323 7 6 2.9554 -2.0127 3.4878 8 6 3.4586 -2.7225 4.7182 9 1 3.7475 -3.7408 4.4577 10 6 4.6711 -1.9758 5.2777 11 7 2.3957 -2.7591 5.7315 12 6 2.5857 -3.8870 6.6533 13 6 1.9645 -5.1489 6.0499 14 6 2.1952 -6.3302 6.9976 15 7 1.6759 -5.9784 8.3263 16 6 0.7771 -6.7926 8.9622 17 1 0.1082 -7.4134 8.3846 18 6 0.7257 -6.8201 10.3490 19 7 1.7288 -6.3418 11.0544 20 14 -0.7670 -7.5360 11.2143 21 1 -0.5583 -8.9887 11.4410 22 1 -0.9571 -6.8537 12.5195 23 1 -1.9722 -7.3348 10.3705 24 6 2.1391 -4.7361 8.9596 25 6 1.9094 -3.5729 7.9897 26 6 2.1568 -0.8916 3.6146 27 6 1.6992 -0.2377 2.4860 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4423 0.0005 35 1 3.0875 -2.2036 0.1227 36 1 3.9087 -3.3642 2.1331 37 1 4.3822 -0.9576 5.5383 38 1 5.0348 -2.4890 6.1680 39 1 5.4598 -1.9487 4.5259 40 1 2.3451 -1.8858 6.2343 41 1 3.6515 -4.0485 6.8147 42 1 0.8942 -4.9970 5.9113 43 1 2.4303 -5.3590 5.0870 44 1 3.2624 -6.5408 7.0664 45 1 1.6726 -7.2099 6.6223 46 1 1.6927 -6.3607 12.0236 47 1 3.2018 -4.8168 9.1884 48 1 1.5798 -4.5615 9.8787 49 1 2.3359 -2.6610 8.4078 50 1 0.8395 -3.4359 7.8327 51 1 1.8932 -0.5245 4.5956 52 1 1.0786 0.6407 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:11 Heat of formation + Delta-G solvation = 23.602871 kcal Electronic energy + Delta-G solvation = -26587.446934 eV Core-core repulsion = 23165.102468 eV Total energy + Delta-G solvation = -3422.344466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.89867 -38.21934 -36.43588 -34.83635 -32.72625 -30.95571 -30.91544 -29.77702 -28.92735 -27.91969 -27.39911 -24.72831 -23.85198 -22.98468 -22.17652 -21.57286 -20.57092 -19.85707 -19.04739 -16.97877 -16.46723 -15.71377 -15.36710 -14.95775 -14.78483 -14.40432 -14.12624 -13.95080 -13.79486 -13.70652 -13.45381 -13.36859 -13.19134 -12.99247 -12.74409 -12.58994 -12.42287 -12.25468 -11.96163 -11.79553 -11.39747 -11.36673 -11.32720 -11.19762 -11.01165 -10.76354 -10.72791 -10.67546 -10.57555 -10.31155 -10.16536 -9.89521 -9.56632 -9.41921 -8.88751 -8.51628 -8.43277 -8.11231 -6.63067 -5.75962 -3.17562 1.35150 1.43962 3.39492 3.46397 3.49608 3.73492 4.36541 4.47131 4.52952 4.58971 4.84634 4.94721 4.96684 5.00748 5.18006 5.20872 5.27663 5.35488 5.39121 5.43638 5.45563 5.48945 5.56552 5.57821 5.64053 5.65934 5.72004 5.73856 5.83805 5.95380 5.96476 5.98461 6.02800 6.06386 6.13884 6.20446 6.38305 6.43721 6.51792 6.58268 6.60050 6.66712 6.69394 6.75014 6.87011 7.02040 7.09191 7.40263 7.41240 7.64826 7.69512 7.83147 8.48822 9.24985 9.88738 10.45801 11.32839 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.002426 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.087909 B =11541.175223 C =11939.399307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.062 4.062 8 C 0.120 3.880 9 H 0.085 0.915 10 C -0.176 4.176 11 N -0.679 5.679 12 C 0.097 3.903 13 C -0.116 4.116 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.249 4.249 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.905 5.905 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.174 3.826 25 C -0.140 4.140 26 C -0.095 4.095 27 C -0.116 4.116 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.335 0.665 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.253 0.747 47 H 0.015 0.985 48 H 0.088 0.912 49 H 0.044 0.956 50 H 0.063 0.937 51 H 0.120 0.880 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.589 14.690 -20.131 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.137 4.137 6 C -0.134 4.134 7 C -0.062 4.062 8 C 0.010 3.990 9 H 0.103 0.897 10 C -0.235 4.235 11 N -0.310 5.310 12 C -0.011 4.011 13 C -0.156 4.156 14 C 0.018 3.982 15 N -0.314 5.314 16 C -0.379 4.379 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.550 5.550 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.180 4.180 26 C -0.113 4.113 27 C -0.134 4.134 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.154 0.846 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.106 0.894 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.138 0.862 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.151 14.335 -20.331 25.076 hybrid contribution 0.078 -0.063 1.063 1.068 sum 3.228 14.272 -19.268 24.195 Atomic orbital electron populations 1.21856 0.94408 1.02113 1.01769 1.20100 0.95922 0.95894 0.95491 1.21851 1.01131 0.95287 1.01784 1.19773 0.98312 0.96016 0.94501 1.20938 0.98717 0.95842 0.98232 1.20970 1.00542 0.99886 0.91981 1.19820 0.97149 0.95262 0.94017 1.20467 0.89555 0.98594 0.90376 0.89703 1.22475 0.98823 1.00742 1.01442 1.60720 1.45968 1.06796 1.17495 1.21468 0.97485 0.90611 0.91567 1.22004 1.01017 0.95099 0.97452 1.20925 0.96058 0.94581 0.86658 1.44042 1.50374 1.21222 1.15796 1.19182 1.09899 1.19848 0.88922 0.91762 1.25039 0.97473 1.00330 0.96949 1.70031 1.29166 1.50423 1.05338 0.86313 0.83003 0.78589 0.78986 1.21437 1.21595 1.20482 1.20724 0.97298 0.82673 0.94536 1.22393 1.00613 0.99669 0.95325 1.20884 0.96931 0.95164 0.98344 1.20912 1.00501 1.00051 0.91980 0.92411 0.92611 0.92465 0.90764 0.92589 0.92460 0.92638 0.86568 0.86406 0.92455 0.92100 0.92229 0.84596 0.94552 0.91813 0.93688 0.96861 0.92785 0.93709 0.96673 0.89384 0.93724 0.91867 0.86234 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.01 37.16 0.33 -0.76 16 2 C -0.06 -0.44 3.09 -91.78 -0.28 -0.73 16 3 C -0.14 -1.00 9.01 37.15 0.33 -0.67 16 4 C -0.09 -0.86 4.78 -104.62 -0.50 -1.36 16 5 C -0.12 -1.23 9.67 -39.59 -0.38 -1.62 16 6 C -0.12 -1.30 9.67 -39.59 -0.38 -1.68 16 7 C -0.06 -0.75 4.96 -104.63 -0.52 -1.26 16 8 C 0.12 1.50 2.60 -68.87 -0.18 1.32 16 9 H 0.08 1.12 6.97 -51.93 -0.36 0.76 16 10 C -0.18 -1.94 9.12 37.16 0.34 -1.60 16 11 N -0.68 -9.65 5.50 -100.91 -0.56 -10.21 16 12 C 0.10 1.65 2.27 -67.67 -0.15 1.50 16 13 C -0.12 -2.13 5.57 -26.61 -0.15 -2.27 16 14 C 0.14 3.12 6.52 -3.71 -0.02 3.09 16 15 N -0.59 -15.06 2.99 -172.33 -0.52 -15.58 16 16 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 17 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 18 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 19 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 20 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 25 C -0.14 -2.68 5.36 -26.62 -0.14 -2.82 16 26 C -0.09 -1.10 9.33 -39.59 -0.37 -1.47 16 27 C -0.12 -1.23 8.71 -39.58 -0.34 -1.57 16 28 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.12 0.99 7.95 -52.49 -0.42 0.57 16 36 H 0.12 1.17 8.04 -52.48 -0.42 0.75 16 37 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.06 0.72 7.43 -51.92 -0.39 0.33 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.34 4.43 7.42 -39.29 -0.29 4.14 16 41 H 0.04 0.64 7.11 -51.93 -0.37 0.27 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.04 0.74 7.41 -51.92 -0.38 0.36 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 49 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 50 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 51 H 0.12 1.32 7.24 -52.48 -0.38 0.94 16 52 H 0.12 1.06 7.10 -52.49 -0.37 0.68 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -29.51 399.07 -11.62 -41.13 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -9.48 Total: 2.50 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.67 Total: -14.91 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.45 Total: -51.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.51 -11.62 -41.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.734 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds