Wall clock time and date at job start Tue Mar 31 2020 11:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47740 * 2 1 4 4 C 1.50702 * 109.47065 * 120.00397 * 2 1 3 5 5 C 1.38233 * 120.00325 * 119.99893 * 4 2 1 6 6 C 1.38231 * 120.00067 * 179.97438 * 5 4 2 7 7 C 1.38234 * 120.00044 * 359.95698 * 6 5 4 8 8 C 1.50699 * 119.99911 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47363 * 339.99306 * 8 7 6 10 10 C 1.52995 * 109.47419 * 99.99544 * 8 7 6 11 11 N 1.46897 * 109.47013 * 219.99477 * 8 7 6 12 12 C 1.46901 * 111.00246 * 154.99727 * 11 8 7 13 13 C 1.53045 * 109.46300 * 275.02918 * 12 11 8 14 14 C 1.53191 * 109.31625 * 178.59787 * 13 12 11 15 15 N 1.46923 * 108.76304 * 54.65627 * 14 13 12 16 16 C 1.36937 * 120.63364 * 126.36151 * 15 14 13 17 17 H 1.07999 * 119.99897 * 331.86487 * 16 15 14 18 18 C 1.38810 * 120.00047 * 151.85833 * 16 15 14 19 19 N 1.31622 * 120.00305 * 343.07174 * 18 16 15 20 20 Si 1.86801 * 119.99749 * 163.06867 * 18 16 15 21 21 H 1.48500 * 109.46960 * 90.00283 * 20 18 16 22 22 H 1.48500 * 109.47214 * 210.00147 * 20 18 16 23 23 H 1.48495 * 109.47339 * 330.00188 * 20 18 16 24 24 C 1.46934 * 118.73738 * 306.38561 * 15 14 13 25 25 C 1.53038 * 109.46269 * 154.97536 * 12 11 8 26 26 C 1.38231 * 119.99996 * 0.27049 * 7 6 5 27 27 C 1.38232 * 119.99963 * 359.51974 * 26 7 6 28 28 H 1.08997 * 109.47039 * 300.00058 * 1 2 3 29 29 H 1.09002 * 109.47043 * 59.99815 * 1 2 3 30 30 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47095 * 240.00000 * 2 1 3 32 32 H 1.09002 * 109.47004 * 300.00209 * 3 2 1 33 33 H 1.09007 * 109.46827 * 59.99835 * 3 2 1 34 34 H 1.08990 * 109.47459 * 179.97438 * 3 2 1 35 35 H 1.08002 * 119.99858 * 359.97294 * 5 4 2 36 36 H 1.08008 * 119.99725 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47053 * 59.99932 * 10 8 7 38 38 H 1.09007 * 109.47450 * 179.97438 * 10 8 7 39 39 H 1.08997 * 109.47084 * 299.99680 * 10 8 7 40 40 H 1.00897 * 111.00589 * 278.95504 * 11 8 7 41 41 H 1.09004 * 109.45853 * 34.99776 * 12 11 8 42 42 H 1.08994 * 109.49660 * 298.56953 * 13 12 11 43 43 H 1.09008 * 109.49652 * 58.65939 * 13 12 11 44 44 H 1.09000 * 109.59761 * 294.87317 * 14 13 12 45 45 H 1.08991 * 109.70443 * 174.50456 * 14 13 12 46 46 H 0.96999 * 120.00050 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.58674 * 293.81725 * 24 15 14 48 48 H 1.08999 * 109.70091 * 173.46867 * 24 15 14 49 49 H 1.09004 * 109.49417 * 301.33750 * 25 12 11 50 50 H 1.09000 * 109.49862 * 61.43085 * 25 12 11 51 51 H 1.08003 * 119.99945 * 179.72894 * 26 7 6 52 52 H 1.08002 * 120.00275 * 180.25121 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8270 -1.8344 1.1036 6 6 3.2881 -2.4858 2.2323 7 6 2.9554 -2.0127 3.4878 8 6 3.4586 -2.7225 4.7182 9 1 3.7475 -3.7408 4.4577 10 6 4.6711 -1.9758 5.2777 11 7 2.3957 -2.7591 5.7315 12 6 2.5857 -3.8870 6.6533 13 6 1.9645 -5.1489 6.0499 14 6 2.1952 -6.3302 6.9976 15 7 1.6759 -5.9784 8.3263 16 6 0.7771 -6.7926 8.9622 17 1 0.1082 -7.4134 8.3846 18 6 0.7257 -6.8201 10.3490 19 7 1.7288 -6.3418 11.0544 20 14 -0.7670 -7.5360 11.2143 21 1 -0.5583 -8.9887 11.4410 22 1 -0.9571 -6.8537 12.5195 23 1 -1.9722 -7.3348 10.3705 24 6 2.1391 -4.7361 8.9596 25 6 1.9094 -3.5729 7.9897 26 6 2.1568 -0.8916 3.6146 27 6 1.6992 -0.2377 2.4860 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4423 0.0005 35 1 3.0875 -2.2036 0.1227 36 1 3.9087 -3.3642 2.1331 37 1 4.3822 -0.9576 5.5383 38 1 5.0348 -2.4890 6.1680 39 1 5.4598 -1.9487 4.5259 40 1 2.3451 -1.8858 6.2343 41 1 3.6515 -4.0485 6.8147 42 1 0.8942 -4.9970 5.9113 43 1 2.4303 -5.3590 5.0870 44 1 3.2624 -6.5408 7.0664 45 1 1.6726 -7.2099 6.6223 46 1 1.6927 -6.3607 12.0236 47 1 3.2018 -4.8168 9.1884 48 1 1.5798 -4.5615 9.8787 49 1 2.3359 -2.6610 8.4078 50 1 0.8395 -3.4359 7.8327 51 1 1.8932 -0.5245 4.5956 52 1 1.0786 0.6407 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:10 Heat of formation + Delta-G solvation = 9.708719 kcal Electronic energy + Delta-G solvation = -26588.049429 eV Core-core repulsion = 23165.102468 eV Total energy + Delta-G solvation = -3422.946962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75876 -39.60641 -37.63833 -35.92433 -34.34323 -32.54576 -31.73478 -31.47479 -30.09144 -29.09437 -27.94741 -26.52149 -24.87089 -23.99888 -23.59975 -23.11842 -21.57480 -20.74642 -20.60551 -18.76941 -17.54023 -16.91261 -16.58128 -16.32877 -15.87847 -15.66036 -15.34834 -15.31716 -14.95754 -14.84257 -14.61160 -14.43566 -14.22159 -13.97992 -13.93350 -13.89031 -13.56201 -13.21821 -13.10761 -12.99532 -12.83229 -12.61666 -12.57113 -12.44324 -12.15226 -12.08486 -12.02771 -11.95022 -11.90754 -11.75636 -11.48754 -11.41983 -11.23248 -11.11016 -10.53999 -9.70490 -9.40677 -9.21649 -8.68654 -7.88219 -5.33146 0.53149 0.62254 1.45805 1.47364 1.57520 2.51092 2.88885 3.19741 3.31413 3.69202 3.78272 3.87510 3.98328 4.00693 4.13908 4.20839 4.23165 4.34015 4.37555 4.40446 4.44671 4.54635 4.58847 4.65978 4.69560 4.70585 4.78501 4.83573 4.86886 4.90736 4.98658 5.01422 5.02573 5.07679 5.10548 5.14097 5.18626 5.25910 5.26831 5.31750 5.39305 5.41030 5.41728 5.52684 5.63555 5.65595 5.74289 5.80586 5.84102 6.18974 6.25059 6.39192 6.53112 7.14709 7.85885 8.37805 9.18423 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.002426 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.087909 B =11541.175223 C =11939.399307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.088 4.088 5 C -0.126 4.126 6 C -0.125 4.125 7 C -0.076 4.076 8 C 0.124 3.876 9 H 0.078 0.922 10 C -0.170 4.170 11 N -0.677 5.677 12 C 0.110 3.890 13 C -0.102 4.102 14 C 0.141 3.859 15 N -0.610 5.610 16 C -0.263 4.263 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.272 1.272 24 C 0.180 3.820 25 C -0.125 4.125 26 C -0.107 4.107 27 C -0.123 4.123 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.343 0.657 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.013 0.987 45 H 0.052 0.948 46 H 0.250 0.750 47 H -0.004 1.004 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.121 0.879 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 15.821 -22.153 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.088 4.088 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.076 4.076 8 C 0.014 3.986 9 H 0.096 0.904 10 C -0.229 4.229 11 N -0.308 5.308 12 C 0.001 3.999 13 C -0.142 4.142 14 C 0.016 3.984 15 N -0.334 5.334 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.197 1.197 24 C 0.054 3.946 25 C -0.165 4.165 26 C -0.125 4.125 27 C -0.141 4.141 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.014 0.986 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.139 0.861 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.862 15.478 -22.388 27.368 hybrid contribution 0.200 -0.408 1.607 1.670 sum 3.062 15.071 -20.782 25.853 Atomic orbital electron populations 1.21847 0.94131 1.01682 1.02372 1.20148 0.96090 0.96338 0.94774 1.21831 1.00915 0.94684 1.02386 1.20069 0.97677 0.95868 0.95164 1.21211 0.98503 0.95850 0.98845 1.21163 1.00818 1.00364 0.92013 1.19803 0.98083 0.95762 0.94000 1.20440 0.89449 0.98594 0.90067 0.90396 1.22401 0.98465 1.00725 1.01261 1.60611 1.47034 1.06216 1.16987 1.21181 0.96782 0.91153 0.90797 1.21809 1.00424 0.94378 0.97578 1.21056 0.95677 0.96091 0.85620 1.44316 1.50483 1.21653 1.16957 1.19490 1.10390 1.19952 0.89459 0.91873 1.25797 1.00002 1.01269 0.97583 1.70180 1.30863 1.51858 1.05221 0.85288 0.79860 0.77754 0.77625 1.21043 1.21689 1.19704 1.20538 0.95300 0.84159 0.94623 1.22145 1.00400 0.98419 0.95516 1.20999 0.97271 0.95399 0.98863 1.21102 1.00571 1.00425 0.91994 0.92695 0.91169 0.93390 0.89976 0.91258 0.92629 0.92949 0.84822 0.85499 0.91810 0.92908 0.91206 0.83700 0.94690 0.93166 0.91422 0.96949 0.92944 0.94072 0.98631 0.92728 0.91376 0.92867 0.86112 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.01 71.98 0.65 -1.23 16 2 C -0.06 -0.75 3.09 -11.54 -0.04 -0.79 16 3 C -0.14 -1.65 9.01 71.98 0.65 -1.00 16 4 C -0.09 -1.59 4.78 -19.86 -0.09 -1.69 16 5 C -0.13 -2.36 9.67 22.27 0.22 -2.15 16 6 C -0.13 -2.60 9.67 22.27 0.22 -2.38 16 7 C -0.08 -1.71 4.96 -19.87 -0.10 -1.81 16 8 C 0.12 2.89 2.60 44.17 0.11 3.00 16 9 H 0.08 1.92 6.97 -2.39 -0.02 1.91 16 10 C -0.17 -3.45 9.12 71.98 0.66 -2.80 16 11 N -0.68 -18.17 5.50 -473.17 -2.60 -20.78 16 12 C 0.11 3.62 2.27 44.94 0.10 3.72 16 13 C -0.10 -3.65 5.57 30.67 0.17 -3.48 16 14 C 0.14 6.11 6.52 86.36 0.56 6.67 16 15 N -0.61 -31.63 2.99 -699.12 -2.09 -33.72 16 16 C -0.26 -14.87 9.58 84.03 0.81 -14.07 16 17 H 0.06 3.51 7.88 -2.91 -0.02 3.48 16 18 C -0.05 -2.92 4.92 84.86 0.42 -2.51 16 19 N -0.94 -56.08 11.19 21.65 0.24 -55.84 16 20 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.18 8.84 5.30 86.36 0.46 9.30 16 25 C -0.13 -4.74 5.36 30.67 0.16 -4.57 16 26 C -0.11 -2.33 9.33 22.27 0.21 -2.12 16 27 C -0.12 -2.40 8.71 22.27 0.19 -2.20 16 28 H 0.05 0.74 7.39 -2.39 -0.02 0.73 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.00 7.88 -2.38 -0.02 0.98 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.67 7.39 -2.38 -0.02 0.65 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.13 1.95 7.95 -2.91 -0.02 1.93 16 36 H 0.13 2.30 8.04 -2.91 -0.02 2.28 16 37 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 38 H 0.05 1.16 7.43 -2.38 -0.02 1.14 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.34 8.45 7.42 -89.70 -0.67 7.79 16 41 H 0.04 1.18 7.11 -2.38 -0.02 1.17 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.12 7.41 -2.38 -0.02 2.10 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 48 H 0.05 3.03 6.06 -2.39 -0.01 3.02 16 49 H 0.07 2.24 8.10 -2.38 -0.02 2.22 16 50 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 51 H 0.12 2.51 7.24 -2.91 -0.02 2.48 16 52 H 0.13 2.11 7.10 -2.91 -0.02 2.09 16 Total: -1.00 -63.70 399.07 3.13 -60.57 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.20 Total: 22.17 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 5.35 Total: -20.10 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.45 Total: -110.33 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -63.70 3.13 -60.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.282 kcal (2) G-P(sol) polarization free energy of solvation -63.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds