Wall clock time and date at job start Tue Mar 31 2020 11:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46751 * 2 1 4 4 N 1.46895 * 109.47462 * 239.99774 * 2 1 3 5 5 C 1.46899 * 110.99925 * 88.86514 * 4 2 1 6 6 C 1.53045 * 109.46203 * 257.10357 * 5 4 2 7 7 C 1.53188 * 109.31379 * 178.61847 * 6 5 4 8 8 N 1.46926 * 108.77901 * 54.63253 * 7 6 5 9 9 C 1.36935 * 120.62768 * 126.37144 * 8 7 6 10 10 H 1.08000 * 120.00126 * 332.12638 * 9 8 7 11 11 C 1.38812 * 119.99791 * 152.13283 * 9 8 7 12 12 N 1.31623 * 119.99881 * 343.37365 * 11 9 8 13 13 Si 1.86798 * 120.00054 * 163.37734 * 11 9 8 14 14 H 1.48498 * 109.46989 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47062 * 119.99656 * 13 11 9 16 16 H 1.48502 * 109.47258 * 239.99560 * 13 11 9 17 17 C 1.46928 * 118.73787 * 306.39411 * 8 7 6 18 18 C 1.53041 * 109.45856 * 137.03714 * 5 4 2 19 19 C 1.53002 * 109.46967 * 119.99328 * 2 1 3 20 20 C 1.52992 * 109.47079 * 64.69223 * 19 2 1 21 21 C 1.52997 * 109.47317 * 304.68767 * 19 2 1 22 22 C 1.50703 * 109.46744 * 184.69054 * 19 2 1 23 23 C 1.38239 * 119.99763 * 186.23382 * 22 19 2 24 24 C 1.38230 * 119.99851 * 180.02562 * 23 22 19 25 25 C 1.38237 * 120.00206 * 359.95219 * 24 23 22 26 26 C 1.38239 * 119.99948 * 0.28119 * 25 24 23 27 27 C 1.38235 * 120.00094 * 6.24941 * 22 19 2 28 28 H 1.09005 * 109.46986 * 295.34950 * 1 2 3 29 29 H 1.08994 * 109.47225 * 55.35232 * 1 2 3 30 30 H 1.08999 * 109.46656 * 175.35231 * 1 2 3 31 31 H 1.00891 * 111.00357 * 212.82415 * 4 2 1 32 32 H 1.08998 * 109.46154 * 17.06274 * 5 4 2 33 33 H 1.09004 * 109.49596 * 298.56587 * 6 5 4 34 34 H 1.09004 * 109.49417 * 58.66231 * 6 5 4 35 35 H 1.09006 * 109.58549 * 294.84701 * 7 6 5 36 36 H 1.08997 * 109.70642 * 174.49703 * 7 6 5 37 37 H 0.97002 * 120.00070 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.58542 * 293.81566 * 17 8 7 39 39 H 1.08998 * 109.70296 * 173.46294 * 17 8 7 40 40 H 1.09001 * 109.49754 * 301.33519 * 18 5 4 41 41 H 1.08999 * 109.50041 * 61.40359 * 18 5 4 42 42 H 1.08996 * 109.47539 * 179.97438 * 20 19 2 43 43 H 1.09003 * 109.47214 * 299.99691 * 20 19 2 44 44 H 1.09007 * 109.47596 * 59.99332 * 20 19 2 45 45 H 1.08997 * 109.47410 * 300.00349 * 21 19 2 46 46 H 1.09003 * 109.46859 * 60.00380 * 21 19 2 47 47 H 1.09004 * 109.46975 * 179.97438 * 21 19 2 48 48 H 1.08000 * 119.99661 * 359.97438 * 23 22 19 49 49 H 1.08001 * 119.99916 * 179.97438 * 24 23 22 50 50 H 1.08002 * 120.00241 * 180.02562 * 25 24 23 51 51 H 1.07999 * 119.99744 * 179.72565 * 26 25 24 52 52 H 1.07994 * 120.00223 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.1696 0.2422 -2.3226 6 6 0.9982 0.0668 -3.2918 7 6 1.1396 1.0667 -4.4437 8 7 2.4627 0.8953 -5.0591 9 6 2.5832 0.6834 -6.4066 10 1 1.7831 0.2047 -6.9516 11 6 3.7338 1.0839 -7.0719 12 7 4.5561 1.9421 -6.5064 13 14 4.1151 0.4050 -8.7699 14 1 3.0414 -0.5356 -9.1794 15 1 4.1925 1.5231 -9.7441 16 1 5.4147 -0.3126 -8.7357 17 6 3.6539 0.9549 -4.2011 18 6 3.4844 -0.0437 -3.0519 19 6 2.0400 -0.7211 1.2494 20 6 1.6286 -2.1936 1.1919 21 6 1.4360 -0.0710 2.4957 22 6 3.5425 -0.6213 1.3088 23 6 4.2429 -1.3087 2.2823 24 6 5.6211 -1.2167 2.3372 25 6 6.2990 -0.4381 1.4179 26 6 5.5982 0.2533 0.4473 27 6 4.2203 0.1580 0.3899 28 1 -0.3633 0.4400 0.9288 29 1 -0.3633 0.5842 -0.8454 30 1 -0.3632 -1.0243 -0.0833 31 1 2.8865 -1.1732 -1.0108 32 1 2.1786 1.2648 -1.9454 33 1 1.0032 -0.9484 -3.6886 34 1 0.0607 0.2478 -2.7658 35 1 1.0440 2.0824 -4.0597 36 1 0.3641 0.8828 -5.1872 37 1 5.3599 2.2222 -6.9714 38 1 3.7634 1.9615 -3.7974 39 1 4.5389 0.6962 -4.7825 40 1 4.3165 0.0586 -2.3553 41 1 3.4662 -1.0581 -3.4505 42 1 1.9922 -2.7075 2.0817 43 1 0.5418 -2.2658 1.1489 44 1 2.0589 -2.6568 0.3039 45 1 1.7291 0.9780 2.5366 46 1 0.3492 -0.1433 2.4527 47 1 1.7990 -0.5851 3.3858 48 1 3.7133 -1.9170 3.0006 49 1 6.1683 -1.7535 3.0980 50 1 7.3758 -0.3665 1.4605 51 1 6.1275 0.8651 -0.2682 52 1 3.6731 0.6956 -0.3702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:34 Heat of formation + Delta-G solvation = 41.544006 kcal Electronic energy + Delta-G solvation = -28149.627113 eV Core-core repulsion = 24728.060632 eV Total energy + Delta-G solvation = -3421.566480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49313 -38.07425 -36.87989 -34.24418 -32.02573 -30.96293 -30.77155 -29.81309 -29.17382 -28.16484 -27.12694 -24.94030 -23.78319 -22.59507 -22.00575 -21.71211 -21.06230 -19.31383 -18.49734 -17.25981 -16.66098 -15.77214 -15.21920 -15.14600 -14.70235 -14.55668 -14.39718 -13.92093 -13.57386 -13.51714 -13.41821 -13.21326 -13.03601 -12.79376 -12.47864 -12.42901 -12.31643 -12.07807 -11.83282 -11.58379 -11.47101 -11.27290 -11.17538 -11.13811 -10.96054 -10.70542 -10.66835 -10.50004 -10.30796 -10.25672 -10.04872 -9.90534 -9.54662 -9.34273 -8.95486 -8.72998 -8.44774 -8.01518 -6.62212 -5.75103 -3.16742 1.32129 1.36791 3.39307 3.47246 3.49818 3.74770 4.36934 4.48300 4.53335 4.56023 4.94977 4.98441 5.07317 5.09875 5.16129 5.37269 5.39468 5.44766 5.46014 5.50015 5.54229 5.59666 5.65939 5.69042 5.75418 5.83929 5.84971 5.93734 5.95606 5.99284 6.01947 6.07302 6.09959 6.23773 6.29857 6.38324 6.40763 6.48022 6.51460 6.59335 6.59547 6.68133 6.69975 6.74898 6.90828 6.97414 7.11068 7.40981 7.49943 7.68543 7.76264 7.84170 8.49471 9.25856 9.89742 10.46585 11.33454 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.003694 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.552303 B = 7577.027330 C = 8765.510822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.093 3.907 3 H 0.045 0.955 4 N -0.684 5.684 5 C 0.096 3.904 6 C -0.114 4.114 7 C 0.143 3.857 8 N -0.591 5.591 9 C -0.248 4.248 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.905 5.905 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.289 1.289 17 C 0.175 3.825 18 C -0.150 4.150 19 C -0.029 4.029 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.071 4.071 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.112 4.112 27 C -0.126 4.126 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.340 0.660 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.013 0.987 36 H 0.053 0.947 37 H 0.252 0.748 38 H 0.014 0.986 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.123 0.877 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -5.545 20.460 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 H 0.063 0.937 4 N -0.317 5.317 5 C -0.013 4.013 6 C -0.154 4.154 7 C 0.017 3.983 8 N -0.314 5.314 9 C -0.378 4.378 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.550 5.550 13 Si 0.731 3.269 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.216 1.216 17 C 0.049 3.951 18 C -0.190 4.190 19 C -0.029 4.029 20 C -0.189 4.189 21 C -0.196 4.196 22 C -0.071 4.071 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.130 4.130 27 C -0.144 4.144 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.141 0.859 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.035 -5.693 20.178 21.184 hybrid contribution 1.240 0.253 -0.628 1.412 sum -1.795 -5.440 19.550 20.372 Atomic orbital electron populations 1.21968 0.94684 1.02427 1.00979 1.21620 0.95909 0.95487 0.88634 0.93726 1.60723 1.36007 1.30111 1.04854 1.21564 0.96303 0.93030 0.90369 1.22033 0.96169 1.00899 0.96289 1.20950 0.89083 0.94801 0.93509 1.44044 0.99815 1.83651 1.03921 1.19249 1.03147 1.31509 0.83850 0.91691 1.25024 0.99599 0.97372 0.97763 1.70038 1.14282 1.32265 1.38405 0.86244 0.78014 0.78440 0.84238 1.20253 1.21785 1.21623 1.20707 0.91916 0.93465 0.89036 1.22590 0.94707 1.02377 0.99316 1.19740 0.90352 0.97103 0.95731 1.21830 1.01648 0.93638 1.01785 1.21936 1.00953 1.00521 0.96151 1.19871 0.95011 0.96859 0.95348 1.20924 0.94018 0.99855 0.98657 1.21095 0.94380 0.99318 0.99114 1.21143 0.99782 0.97786 0.95741 1.21229 0.94360 0.99132 0.98285 1.21427 0.94665 0.99159 0.99103 0.92782 0.92472 0.91850 0.83881 0.94000 0.92092 0.93213 0.96940 0.92886 0.93793 0.96774 0.89399 0.93627 0.92084 0.93270 0.91976 0.91548 0.92655 0.91598 0.92587 0.86360 0.86418 0.86348 0.85918 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.70 37.16 0.32 -1.29 16 2 C 0.09 1.14 1.26 -67.71 -0.08 1.05 16 3 H 0.04 0.60 6.03 -51.93 -0.31 0.29 16 4 N -0.68 -9.68 5.12 -99.69 -0.51 -10.19 16 5 C 0.10 1.63 1.63 -67.67 -0.11 1.52 16 6 C -0.11 -2.07 5.69 -26.61 -0.15 -2.22 16 7 C 0.14 3.08 6.52 -3.71 -0.02 3.06 16 8 N -0.59 -15.02 2.99 -172.32 -0.52 -15.53 16 9 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 10 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 11 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 12 N -0.90 -26.46 11.15 55.49 0.62 -25.84 16 13 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 C 0.18 4.20 5.30 -3.71 -0.02 4.18 16 18 C -0.15 -2.87 5.14 -26.61 -0.14 -3.01 16 19 C -0.03 -0.30 0.39 -155.66 -0.06 -0.36 16 20 C -0.13 -1.32 7.74 37.15 0.29 -1.03 16 21 C -0.14 -1.24 7.87 37.16 0.29 -0.95 16 22 C -0.07 -0.81 4.23 -104.62 -0.44 -1.25 16 23 C -0.12 -1.21 8.77 -39.58 -0.35 -1.56 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 25 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.11 -1.37 10.05 -39.58 -0.40 -1.77 16 27 C -0.13 -1.60 7.31 -39.58 -0.29 -1.89 16 28 H 0.05 0.52 6.08 -51.93 -0.32 0.20 16 29 H 0.06 0.71 6.65 -51.93 -0.35 0.37 16 30 H 0.06 0.72 6.79 -51.93 -0.35 0.37 16 31 H 0.34 4.91 5.14 -39.30 -0.20 4.71 16 32 H 0.04 0.74 6.94 -51.93 -0.36 0.38 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.81 6.57 -51.93 -0.34 0.47 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 2.37 6.03 -51.93 -0.31 2.06 16 40 H 0.05 0.79 7.06 -51.93 -0.37 0.43 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.43 7.07 -51.93 -0.37 0.06 16 43 H 0.06 0.59 6.66 -51.93 -0.35 0.25 16 44 H 0.07 0.76 7.09 -51.93 -0.37 0.39 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.54 6.25 -51.93 -0.32 0.21 16 47 H 0.06 0.46 7.78 -51.93 -0.40 0.05 16 48 H 0.12 1.03 7.11 -52.49 -0.37 0.66 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 51 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 52 H 0.13 1.78 3.68 -52.49 -0.19 1.59 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -29.08 377.31 -10.57 -39.65 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.63 Total: 5.36 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.19 Total: -16.04 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.41 Total: -51.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.08 -10.57 -39.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.190 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds