Wall clock time and date at job start Tue Mar 31 2020 11:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46751 * 2 1 4 4 N 1.46895 * 109.47462 * 239.99774 * 2 1 3 5 5 C 1.46899 * 110.99925 * 88.86514 * 4 2 1 6 6 C 1.53045 * 109.46203 * 257.10357 * 5 4 2 7 7 C 1.53188 * 109.31379 * 178.61847 * 6 5 4 8 8 N 1.46926 * 108.77901 * 54.63253 * 7 6 5 9 9 C 1.36935 * 120.62768 * 126.37144 * 8 7 6 10 10 H 1.08000 * 120.00126 * 332.12638 * 9 8 7 11 11 C 1.38812 * 119.99791 * 152.13283 * 9 8 7 12 12 N 1.31623 * 119.99881 * 343.37365 * 11 9 8 13 13 Si 1.86798 * 120.00054 * 163.37734 * 11 9 8 14 14 H 1.48498 * 109.46989 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47062 * 119.99656 * 13 11 9 16 16 H 1.48502 * 109.47258 * 239.99560 * 13 11 9 17 17 C 1.46928 * 118.73787 * 306.39411 * 8 7 6 18 18 C 1.53041 * 109.45856 * 137.03714 * 5 4 2 19 19 C 1.53002 * 109.46967 * 119.99328 * 2 1 3 20 20 C 1.52992 * 109.47079 * 64.69223 * 19 2 1 21 21 C 1.52997 * 109.47317 * 304.68767 * 19 2 1 22 22 C 1.50703 * 109.46744 * 184.69054 * 19 2 1 23 23 C 1.38239 * 119.99763 * 186.23382 * 22 19 2 24 24 C 1.38230 * 119.99851 * 180.02562 * 23 22 19 25 25 C 1.38237 * 120.00206 * 359.95219 * 24 23 22 26 26 C 1.38239 * 119.99948 * 0.28119 * 25 24 23 27 27 C 1.38235 * 120.00094 * 6.24941 * 22 19 2 28 28 H 1.09005 * 109.46986 * 295.34950 * 1 2 3 29 29 H 1.08994 * 109.47225 * 55.35232 * 1 2 3 30 30 H 1.08999 * 109.46656 * 175.35231 * 1 2 3 31 31 H 1.00891 * 111.00357 * 212.82415 * 4 2 1 32 32 H 1.08998 * 109.46154 * 17.06274 * 5 4 2 33 33 H 1.09004 * 109.49596 * 298.56587 * 6 5 4 34 34 H 1.09004 * 109.49417 * 58.66231 * 6 5 4 35 35 H 1.09006 * 109.58549 * 294.84701 * 7 6 5 36 36 H 1.08997 * 109.70642 * 174.49703 * 7 6 5 37 37 H 0.97002 * 120.00070 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.58542 * 293.81566 * 17 8 7 39 39 H 1.08998 * 109.70296 * 173.46294 * 17 8 7 40 40 H 1.09001 * 109.49754 * 301.33519 * 18 5 4 41 41 H 1.08999 * 109.50041 * 61.40359 * 18 5 4 42 42 H 1.08996 * 109.47539 * 179.97438 * 20 19 2 43 43 H 1.09003 * 109.47214 * 299.99691 * 20 19 2 44 44 H 1.09007 * 109.47596 * 59.99332 * 20 19 2 45 45 H 1.08997 * 109.47410 * 300.00349 * 21 19 2 46 46 H 1.09003 * 109.46859 * 60.00380 * 21 19 2 47 47 H 1.09004 * 109.46975 * 179.97438 * 21 19 2 48 48 H 1.08000 * 119.99661 * 359.97438 * 23 22 19 49 49 H 1.08001 * 119.99916 * 179.97438 * 24 23 22 50 50 H 1.08002 * 120.00241 * 180.02562 * 25 24 23 51 51 H 1.07999 * 119.99744 * 179.72565 * 26 25 24 52 52 H 1.07994 * 120.00223 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.1696 0.2422 -2.3226 6 6 0.9982 0.0668 -3.2918 7 6 1.1396 1.0667 -4.4437 8 7 2.4627 0.8953 -5.0591 9 6 2.5832 0.6834 -6.4066 10 1 1.7831 0.2047 -6.9516 11 6 3.7338 1.0839 -7.0719 12 7 4.5561 1.9421 -6.5064 13 14 4.1151 0.4050 -8.7699 14 1 3.0414 -0.5356 -9.1794 15 1 4.1925 1.5231 -9.7441 16 1 5.4147 -0.3126 -8.7357 17 6 3.6539 0.9549 -4.2011 18 6 3.4844 -0.0437 -3.0519 19 6 2.0400 -0.7211 1.2494 20 6 1.6286 -2.1936 1.1919 21 6 1.4360 -0.0710 2.4957 22 6 3.5425 -0.6213 1.3088 23 6 4.2429 -1.3087 2.2823 24 6 5.6211 -1.2167 2.3372 25 6 6.2990 -0.4381 1.4179 26 6 5.5982 0.2533 0.4473 27 6 4.2203 0.1580 0.3899 28 1 -0.3633 0.4400 0.9288 29 1 -0.3633 0.5842 -0.8454 30 1 -0.3632 -1.0243 -0.0833 31 1 2.8865 -1.1732 -1.0108 32 1 2.1786 1.2648 -1.9454 33 1 1.0032 -0.9484 -3.6886 34 1 0.0607 0.2478 -2.7658 35 1 1.0440 2.0824 -4.0597 36 1 0.3641 0.8828 -5.1872 37 1 5.3599 2.2222 -6.9714 38 1 3.7634 1.9615 -3.7974 39 1 4.5389 0.6962 -4.7825 40 1 4.3165 0.0586 -2.3553 41 1 3.4662 -1.0581 -3.4505 42 1 1.9922 -2.7075 2.0817 43 1 0.5418 -2.2658 1.1489 44 1 2.0589 -2.6568 0.3039 45 1 1.7291 0.9780 2.5366 46 1 0.3492 -0.1433 2.4527 47 1 1.7990 -0.5851 3.3858 48 1 3.7133 -1.9170 3.0006 49 1 6.1683 -1.7535 3.0980 50 1 7.3758 -0.3665 1.4605 51 1 6.1275 0.8651 -0.2682 52 1 3.6731 0.6956 -0.3702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:32 Heat of formation + Delta-G solvation = 27.230249 kcal Electronic energy + Delta-G solvation = -28150.247804 eV Core-core repulsion = 24728.060632 eV Total energy + Delta-G solvation = -3422.187171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42698 -39.44337 -38.08065 -35.76517 -33.72366 -32.13161 -31.82148 -31.30558 -30.60606 -29.20742 -27.97849 -26.64562 -24.93356 -23.88095 -23.33371 -23.08319 -22.26643 -20.87407 -19.55595 -18.77177 -17.98391 -16.90931 -16.82497 -16.24378 -15.99298 -15.68084 -15.56552 -15.32970 -15.19629 -14.79179 -14.57774 -14.36211 -14.24371 -14.05715 -13.91075 -13.44522 -13.24748 -13.14455 -13.09652 -13.00410 -12.79356 -12.59812 -12.40462 -12.36845 -12.26295 -12.14362 -12.01178 -11.93960 -11.91012 -11.73844 -11.45407 -11.30283 -11.20073 -10.85631 -10.56381 -9.83394 -9.57610 -9.23806 -8.69702 -7.88539 -5.33908 0.47668 0.50646 1.44648 1.46450 1.57413 2.50290 2.89788 3.16701 3.30277 3.64978 3.66918 3.68679 3.98834 4.10126 4.13933 4.18066 4.26354 4.27985 4.37052 4.42998 4.53740 4.54557 4.60798 4.63663 4.70146 4.72804 4.77016 4.86078 4.91649 4.95326 4.99342 5.01770 5.07137 5.08239 5.14507 5.17231 5.24447 5.26328 5.29525 5.30994 5.39381 5.52371 5.53800 5.56324 5.63843 5.65427 5.66846 5.71100 5.75800 6.14003 6.25903 6.38271 6.54531 7.13713 7.85009 8.37105 9.18013 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.003694 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.552303 B = 7577.027330 C = 8765.510822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.093 3.907 3 H 0.030 0.970 4 N -0.675 5.675 5 C 0.111 3.889 6 C -0.100 4.100 7 C 0.140 3.860 8 N -0.609 5.609 9 C -0.262 4.262 10 H 0.066 0.934 11 C -0.050 4.050 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.184 3.816 18 C -0.132 4.132 19 C -0.022 4.022 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.076 4.076 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.145 4.145 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.340 0.660 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.009 0.991 36 H 0.053 0.947 37 H 0.249 0.751 38 H -0.008 1.008 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.141 0.859 49 H 0.145 0.855 50 H 0.135 0.865 51 H 0.116 0.884 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -7.300 22.666 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.017 4.017 3 H 0.048 0.952 4 N -0.308 5.308 5 C 0.001 3.999 6 C -0.139 4.139 7 C 0.014 3.986 8 N -0.333 5.333 9 C -0.392 4.392 10 H 0.083 0.917 11 C -0.246 4.246 12 N -0.583 5.583 13 Si 0.795 3.205 14 H -0.191 1.191 15 H -0.218 1.218 16 H -0.216 1.216 17 C 0.057 3.943 18 C -0.172 4.172 19 C -0.023 4.023 20 C -0.186 4.186 21 C -0.193 4.193 22 C -0.076 4.076 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.163 4.163 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.159 0.841 49 H 0.163 0.837 50 H 0.153 0.847 51 H 0.134 0.866 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.955 -7.458 22.406 23.943 hybrid contribution 1.516 0.840 -1.259 2.143 sum -2.439 -6.618 21.147 22.292 Atomic orbital electron populations 1.21950 0.93633 1.02580 1.01554 1.21687 0.96583 0.94808 0.88622 0.95166 1.60704 1.35851 1.29183 1.05029 1.21284 0.94351 0.93289 0.90983 1.21852 0.97765 0.99022 0.95289 1.21094 0.87322 0.95621 0.94565 1.44308 1.01388 1.83932 1.03673 1.19568 1.03329 1.31208 0.85128 0.91678 1.25786 0.99545 0.97759 1.01468 1.70192 1.14592 1.33548 1.39919 0.85217 0.77764 0.77716 0.79833 1.19099 1.21786 1.21634 1.20481 0.90537 0.93473 0.89787 1.22327 0.96911 1.00015 0.97939 1.19705 0.89792 0.97440 0.95356 1.21808 1.02014 0.92961 1.01792 1.21929 1.01608 1.00037 0.95717 1.20013 0.95609 0.96705 0.95315 1.21207 0.94334 0.99485 0.98485 1.21453 0.94578 0.98640 0.99107 1.21388 1.00765 0.97518 0.95406 1.21326 0.94501 1.00021 0.99152 1.21355 0.94925 1.00280 0.99700 0.90721 0.93786 0.91485 0.83883 0.94776 0.93027 0.90767 0.97290 0.92827 0.94143 0.99001 0.92798 0.92165 0.93019 0.91572 0.91296 0.93246 0.93420 0.90431 0.91169 0.84087 0.83724 0.84703 0.86604 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.70 71.98 0.63 -2.23 16 2 C 0.09 2.13 1.26 44.92 0.06 2.19 16 3 H 0.03 0.81 6.03 -2.39 -0.01 0.79 16 4 N -0.68 -18.59 5.12 -469.33 -2.40 -21.00 16 5 C 0.11 3.75 1.63 44.94 0.07 3.83 16 6 C -0.10 -3.57 5.69 30.67 0.17 -3.39 16 7 C 0.14 6.09 6.52 86.36 0.56 6.65 16 8 N -0.61 -31.86 2.99 -699.10 -2.09 -33.95 16 9 C -0.26 -14.92 9.59 84.03 0.81 -14.11 16 10 H 0.07 3.63 7.88 -2.91 -0.02 3.60 16 11 C -0.05 -2.89 4.93 84.86 0.42 -2.47 16 12 N -0.94 -56.63 11.15 21.65 0.24 -56.39 16 13 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 17 C 0.18 9.22 5.30 86.36 0.46 9.67 16 18 C -0.13 -5.20 5.14 30.67 0.16 -5.05 16 19 C -0.02 -0.42 0.39 -52.93 -0.02 -0.44 16 20 C -0.13 -2.20 7.74 71.98 0.56 -1.64 16 21 C -0.14 -2.04 7.87 71.98 0.57 -1.47 16 22 C -0.08 -1.62 4.23 -19.86 -0.08 -1.71 16 23 C -0.12 -2.11 8.77 22.27 0.20 -1.92 16 24 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 25 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 26 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 27 C -0.14 -3.69 7.31 22.27 0.16 -3.53 16 28 H 0.07 1.22 6.08 -2.38 -0.01 1.20 16 29 H 0.04 1.01 6.65 -2.39 -0.02 1.00 16 30 H 0.07 1.34 6.79 -2.39 -0.02 1.32 16 31 H 0.34 9.63 5.14 -89.70 -0.46 9.17 16 32 H 0.03 1.23 6.94 -2.39 -0.02 1.22 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.31 6.57 -2.38 -0.02 2.30 16 35 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.05 3.06 6.03 -2.39 -0.01 3.04 16 40 H 0.06 2.17 7.06 -2.39 -0.02 2.16 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 0.91 7.07 -2.39 -0.02 0.89 16 43 H 0.07 1.09 6.66 -2.39 -0.02 1.08 16 44 H 0.05 1.02 7.09 -2.38 -0.02 1.01 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.99 6.25 -2.39 -0.01 0.97 16 47 H 0.07 0.88 7.78 -2.38 -0.02 0.86 16 48 H 0.14 1.87 7.11 -2.91 -0.02 1.85 16 49 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 50 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 51 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 52 H 0.11 3.13 3.68 -2.91 -0.01 3.12 16 Total: -1.00 -64.24 377.31 3.60 -60.64 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.44 Total: 25.79 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 5.38 Total: -23.01 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.25 Total: -111.34 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -64.24 3.60 -60.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.868 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds