Wall clock time and date at job start Tue Mar 31 2020 11:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46985 * 2 1 4 4 N 1.46896 * 109.47186 * 120.00497 * 2 1 3 5 5 C 1.46893 * 111.00087 * 274.99974 * 4 2 1 6 6 C 1.53044 * 109.46049 * 275.02586 * 5 4 2 7 7 C 1.53192 * 109.31470 * 178.59645 * 6 5 4 8 8 N 1.46931 * 108.76162 * 54.65839 * 7 6 5 9 9 C 1.36936 * 120.62758 * 126.35941 * 8 7 6 10 10 H 1.08006 * 120.00086 * 207.92740 * 9 8 7 11 11 C 1.38812 * 120.00398 * 27.93981 * 9 8 7 12 12 N 1.31621 * 119.99543 * 12.05262 * 11 9 8 13 13 Si 1.86799 * 120.00151 * 192.06244 * 11 9 8 14 14 H 1.48495 * 109.47263 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47374 * 119.99430 * 13 11 9 16 16 H 1.48504 * 109.46956 * 239.99254 * 13 11 9 17 17 C 1.46923 * 118.73904 * 306.38358 * 8 7 6 18 18 C 1.53040 * 109.46363 * 154.97511 * 5 4 2 19 19 C 1.53000 * 109.46614 * 240.00471 * 2 1 3 20 20 C 1.53001 * 109.47349 * 58.26356 * 19 2 1 21 21 C 1.53004 * 109.46665 * 178.26443 * 19 2 1 22 22 C 1.50708 * 109.47417 * 298.26024 * 19 2 1 23 23 C 1.38236 * 119.99500 * 353.74934 * 22 19 2 24 24 C 1.38240 * 119.99353 * 179.76720 * 23 22 19 25 25 C 1.38229 * 120.00007 * 0.50855 * 24 23 22 26 26 C 1.38230 * 120.00078 * 359.74425 * 25 24 23 27 27 C 1.38229 * 119.99999 * 174.02510 * 22 19 2 28 28 H 1.09002 * 109.47276 * 175.85140 * 1 2 3 29 29 H 1.08996 * 109.46929 * 295.84670 * 1 2 3 30 30 H 1.08997 * 109.47170 * 55.85161 * 1 2 3 31 31 H 1.00901 * 110.99989 * 151.03863 * 4 2 1 32 32 H 1.09002 * 109.46526 * 35.00028 * 5 4 2 33 33 H 1.08999 * 109.49938 * 298.56565 * 6 5 4 34 34 H 1.08998 * 109.49339 * 58.66431 * 6 5 4 35 35 H 1.09001 * 109.60335 * 294.87535 * 7 6 5 36 36 H 1.09001 * 109.58568 * 174.43570 * 7 6 5 37 37 H 0.97003 * 119.99681 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.58841 * 293.81855 * 17 8 7 39 39 H 1.09002 * 109.70406 * 173.46457 * 17 8 7 40 40 H 1.09005 * 109.49642 * 301.33831 * 18 5 4 41 41 H 1.08997 * 109.50104 * 61.43093 * 18 5 4 42 42 H 1.09002 * 109.46818 * 179.97438 * 20 19 2 43 43 H 1.08997 * 109.46734 * 299.99325 * 20 19 2 44 44 H 1.08997 * 109.46966 * 59.99652 * 20 19 2 45 45 H 1.08997 * 109.46883 * 299.99474 * 21 19 2 46 46 H 1.09000 * 109.47518 * 60.00002 * 21 19 2 47 47 H 1.09001 * 109.46765 * 180.02562 * 21 19 2 48 48 H 1.08000 * 120.00198 * 359.97438 * 23 22 19 49 49 H 1.08002 * 119.99672 * 180.23162 * 24 23 22 50 50 H 1.07999 * 120.00044 * 179.72944 * 25 24 23 51 51 H 1.08010 * 120.00126 * 179.97438 * 26 25 24 52 52 H 1.08007 * 120.00454 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3468 6 6 3.4114 0.9812 2.3217 7 6 3.4585 1.9594 3.4997 8 7 3.2124 1.2150 4.7423 9 6 4.0897 1.2978 5.7905 10 1 4.1847 0.4732 6.4815 11 6 4.8566 2.4415 5.9652 12 7 4.5798 3.5304 5.2796 13 14 6.2815 2.4352 7.1731 14 1 6.3821 1.0989 7.8129 15 1 7.5440 2.7350 6.4510 16 1 6.0508 3.4669 8.2161 17 6 2.0075 0.3799 4.8387 18 6 1.9765 -0.5804 3.6455 19 6 2.0399 -0.7212 -1.2493 20 6 1.4945 -0.0255 -2.4981 21 6 3.5693 -0.6834 -1.2714 22 6 1.5731 -2.1540 -1.2281 23 6 0.9162 -2.6504 -0.1177 24 6 0.4837 -3.9633 -0.1002 25 6 0.7174 -4.7825 -1.1887 26 6 1.3789 -4.2875 -2.2969 27 6 1.8068 -2.9732 -2.3167 28 1 -0.3634 -1.0250 -0.0743 29 1 -0.3633 0.4480 0.9248 30 1 -0.3633 0.5768 -0.8505 31 1 2.9173 -1.1207 1.0285 32 1 1.2576 0.9327 2.2906 33 1 4.2362 0.2733 2.4032 34 1 3.4969 1.5341 1.3863 35 1 2.6903 2.7223 3.3725 36 1 4.4405 2.4305 3.5443 37 1 5.1160 4.3296 5.4014 38 1 1.1210 1.0138 4.8207 39 1 2.0294 -0.1913 5.7668 40 1 1.0405 -1.1391 3.6523 41 1 2.8149 -1.2734 3.7143 42 1 1.8582 -0.5391 -3.3882 43 1 0.4050 -0.0525 -2.4824 44 1 1.8322 1.0107 -2.5135 45 1 3.9070 0.3528 -1.2868 46 1 3.9579 -1.1791 -0.3817 47 1 3.9326 -1.1968 -2.1617 48 1 0.7380 -2.0116 0.7347 49 1 -0.0328 -4.3501 0.7659 50 1 0.3834 -5.8094 -1.1733 51 1 1.5618 -4.9278 -3.1474 52 1 2.3243 -2.5867 -3.1823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:36 Heat of formation + Delta-G solvation = 37.304796 kcal Electronic energy + Delta-G solvation = -27990.860301 eV Core-core repulsion = 24569.109995 eV Total energy + Delta-G solvation = -3421.750306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40141 -39.46557 -37.90903 -35.69397 -33.78431 -32.25047 -31.44239 -30.99624 -30.52411 -29.95634 -27.74462 -26.43601 -24.58720 -23.79859 -23.35523 -22.96170 -22.33805 -20.89826 -19.84520 -18.78879 -17.79786 -16.96604 -16.58030 -16.09238 -15.88084 -15.71627 -15.37694 -15.29626 -15.00189 -14.78524 -14.57147 -14.39912 -14.15562 -14.02233 -13.69438 -13.45801 -13.27553 -13.03576 -12.98834 -12.90535 -12.79020 -12.62331 -12.59987 -12.44825 -12.37416 -12.15213 -11.93222 -11.92767 -11.77746 -11.70891 -11.42578 -11.31386 -11.15684 -10.90389 -10.56978 -9.56692 -9.35617 -9.11862 -8.65676 -7.85266 -5.33987 0.64242 0.73780 1.45142 1.46501 1.57193 2.50421 3.08070 3.16701 3.31141 3.69735 3.72507 3.79474 3.99695 4.13133 4.21185 4.27417 4.33074 4.35600 4.45613 4.50697 4.53711 4.58568 4.67943 4.72867 4.78686 4.79780 4.82281 4.88877 4.91967 4.97044 4.98677 5.01074 5.07201 5.13382 5.17712 5.24537 5.27682 5.29876 5.36072 5.38846 5.41827 5.48321 5.53928 5.56235 5.63710 5.76666 5.77619 5.91293 5.98978 6.20902 6.38939 6.40846 6.52090 7.15751 7.87328 8.37885 9.19261 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.003140 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.406854 B = 8914.966686 C = 9252.813201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.091 3.909 3 H 0.039 0.961 4 N -0.665 5.665 5 C 0.105 3.895 6 C -0.148 4.148 7 C 0.180 3.820 8 N -0.611 5.611 9 C -0.258 4.258 10 H 0.066 0.934 11 C -0.055 4.055 12 N -0.938 5.938 13 Si 0.969 3.031 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.292 1.292 17 C 0.141 3.859 18 C -0.103 4.103 19 C -0.019 4.019 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.076 4.076 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.135 4.135 26 C -0.138 4.138 27 C -0.125 4.125 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.341 0.659 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.057 0.943 35 H -0.009 1.009 36 H 0.057 0.943 37 H 0.249 0.751 38 H 0.012 0.988 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.171 0.829 49 H 0.123 0.877 50 H 0.129 0.871 51 H 0.133 0.867 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 -13.025 -18.145 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 H 0.057 0.943 4 N -0.297 5.297 5 C -0.005 4.005 6 C -0.189 4.189 7 C 0.054 3.946 8 N -0.335 5.335 9 C -0.388 4.388 10 H 0.084 0.916 11 C -0.249 4.249 12 N -0.585 5.585 13 Si 0.797 3.203 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.219 1.219 17 C 0.015 3.985 18 C -0.142 4.142 19 C -0.019 4.019 20 C -0.195 4.195 21 C -0.200 4.200 22 C -0.076 4.076 23 C -0.144 4.144 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.143 4.143 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.009 0.991 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.188 0.812 49 H 0.141 0.859 50 H 0.147 0.853 51 H 0.151 0.849 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.404 -13.148 -17.956 23.789 hybrid contribution 1.645 1.060 0.680 2.072 sum -6.759 -12.088 -17.275 22.141 Atomic orbital electron populations 1.22192 0.94198 1.03205 1.01369 1.21548 0.96155 0.95449 0.88666 0.94310 1.60988 1.33129 1.31461 1.04108 1.21333 0.95365 0.92815 0.90953 1.22621 0.98590 0.99380 0.98312 1.20551 0.99208 0.91044 0.83824 1.44334 1.22829 1.53855 1.12506 1.19596 1.15571 0.98105 1.05557 0.91605 1.25829 1.03418 0.94590 1.01100 1.70159 1.41141 1.01634 1.45547 0.85174 0.79047 0.77664 0.78395 1.19103 1.21709 1.21898 1.21071 0.88025 0.92275 0.97154 1.21788 1.01569 0.97348 0.93540 1.19633 0.95296 0.91666 0.95340 1.21921 1.01469 1.00214 0.95896 1.21948 0.93912 1.01969 1.02205 1.19757 0.98674 0.94795 0.94412 1.22518 0.95972 0.96142 0.99816 1.21454 1.01125 0.94686 0.98852 1.21383 0.99599 1.00266 0.94096 1.21291 0.99524 0.95880 0.98914 1.21154 1.00607 0.94072 0.98466 0.90666 0.93525 0.91576 0.83769 0.91777 0.93410 0.92485 0.99122 0.92427 0.94217 0.96955 0.92858 0.90223 0.93171 0.91357 0.91919 0.92116 0.92395 0.93290 0.91099 0.81249 0.85890 0.85268 0.84930 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.25 71.98 0.59 -2.64 16 2 C 0.09 2.05 1.64 44.92 0.07 2.12 16 3 H 0.04 0.98 7.11 -2.39 -0.02 0.96 16 4 N -0.67 -16.80 3.09 -469.34 -1.45 -18.25 16 5 C 0.11 3.33 2.23 44.94 0.10 3.43 16 6 C -0.15 -5.55 5.31 30.67 0.16 -5.39 16 7 C 0.18 8.84 5.29 86.36 0.46 9.30 16 8 N -0.61 -31.20 3.00 -699.09 -2.10 -33.30 16 9 C -0.26 -14.42 9.62 84.03 0.81 -13.61 16 10 H 0.07 3.60 7.86 -2.91 -0.02 3.57 16 11 C -0.05 -3.10 5.05 84.86 0.43 -2.67 16 12 N -0.94 -56.08 10.87 21.65 0.24 -55.84 16 13 Si 0.97 45.46 29.57 68.60 2.03 47.49 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 17 C 0.14 5.89 6.51 86.36 0.56 6.45 16 18 C -0.10 -3.46 5.69 30.67 0.17 -3.28 16 19 C -0.02 -0.36 0.41 -52.92 -0.02 -0.38 16 20 C -0.14 -2.22 7.82 71.98 0.56 -1.66 16 21 C -0.14 -2.75 8.13 71.98 0.59 -2.17 16 22 C -0.08 -1.55 4.38 -19.86 -0.09 -1.64 16 23 C -0.13 -2.81 6.71 22.27 0.15 -2.66 16 24 C -0.14 -2.98 10.05 22.27 0.22 -2.76 16 25 C -0.14 -2.53 10.05 22.27 0.22 -2.31 16 26 C -0.14 -2.47 10.05 22.27 0.22 -2.24 16 27 C -0.13 -2.32 8.77 22.27 0.20 -2.13 16 28 H 0.07 1.60 4.87 -2.39 -0.01 1.59 16 29 H 0.05 1.08 7.38 -2.39 -0.02 1.06 16 30 H 0.07 1.23 6.63 -2.39 -0.02 1.22 16 31 H 0.34 8.87 5.97 -89.69 -0.54 8.33 16 32 H 0.06 2.14 7.10 -2.39 -0.02 2.13 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.96 7.41 -2.39 -0.02 1.94 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.06 3.24 5.86 -2.39 -0.01 3.22 16 37 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.05 2.19 7.94 -2.39 -0.02 2.17 16 40 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 0.95 7.08 -2.39 -0.02 0.93 16 43 H 0.06 1.01 6.49 -2.39 -0.02 0.99 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.05 1.05 6.28 -2.39 -0.01 1.03 16 47 H 0.07 1.18 7.77 -2.39 -0.02 1.16 16 48 H 0.17 4.01 3.78 -2.91 -0.01 4.00 16 49 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 50 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 51 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 52 H 0.13 1.93 7.11 -2.91 -0.02 1.91 16 Total: -1.00 -62.03 379.90 4.49 -57.54 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.36 Total: 26.61 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 5.42 Total: -24.25 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.31 Total: -107.39 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -62.03 4.49 -57.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.848 kcal (2) G-P(sol) polarization free energy of solvation -62.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds