Wall clock time and date at job start Tue Mar 31 2020 10:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47015 * 2 1 4 4 C 1.38242 * 120.00021 * 269.72561 * 3 2 1 5 5 C 1.38230 * 120.00031 * 179.79122 * 4 3 2 6 6 C 1.38237 * 119.99673 * 0.43711 * 5 4 3 7 7 C 1.50708 * 119.99884 * 179.83280 * 6 5 4 8 8 H 1.08994 * 109.47119 * 159.97963 * 7 6 5 9 9 C 1.52996 * 109.47220 * 279.98452 * 7 6 5 10 10 C 1.52996 * 109.47101 * 294.41683 * 9 7 6 11 11 N 1.46903 * 109.46842 * 39.98504 * 7 6 5 12 12 C 1.46894 * 111.00084 * 152.97119 * 11 7 6 13 13 C 1.53038 * 109.46218 * 274.58312 * 12 11 7 14 14 C 1.53194 * 109.31729 * 178.61274 * 13 12 11 15 15 N 1.46933 * 108.77198 * 54.63113 * 14 13 12 16 16 C 1.36933 * 120.62663 * 126.37215 * 15 14 13 17 17 H 1.08005 * 119.99932 * 327.00370 * 16 15 14 18 18 C 1.38815 * 120.00235 * 147.00897 * 16 15 14 19 19 N 1.31618 * 119.99414 * 343.71402 * 18 16 15 20 20 Si 1.86797 * 120.00409 * 163.71905 * 18 16 15 21 21 H 1.48498 * 109.47088 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47118 * 119.99983 * 20 18 16 23 23 H 1.48500 * 109.47188 * 239.99647 * 20 18 16 24 24 C 1.46924 * 118.74099 * 306.39783 * 15 14 13 25 25 C 1.53041 * 109.46187 * 154.51091 * 12 11 7 26 26 C 1.38227 * 120.00572 * 359.81894 * 6 5 4 27 27 C 1.38229 * 120.00052 * 90.00343 * 3 2 1 28 28 H 1.08996 * 109.47183 * 300.00069 * 1 2 3 29 29 H 1.09004 * 109.46842 * 60.00109 * 1 2 3 30 30 H 1.09003 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47402 * 120.00158 * 2 1 3 32 32 H 1.09005 * 109.46664 * 240.00161 * 2 1 3 33 33 H 1.07997 * 119.99805 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00298 * 180.27821 * 5 4 3 35 35 H 1.09002 * 109.47519 * 54.42062 * 9 7 6 36 36 H 1.09004 * 109.46884 * 174.41463 * 9 7 6 37 37 H 1.09005 * 109.47176 * 184.59426 * 10 9 7 38 38 H 1.08997 * 109.47134 * 304.58891 * 10 9 7 39 39 H 1.08998 * 109.47426 * 64.59306 * 10 9 7 40 40 H 1.00907 * 110.99873 * 276.92454 * 11 7 6 41 41 H 1.09006 * 109.45903 * 34.54057 * 12 11 7 42 42 H 1.09002 * 109.49375 * 298.56537 * 13 12 11 43 43 H 1.09004 * 109.49975 * 58.65985 * 13 12 11 44 44 H 1.08999 * 109.58487 * 294.85007 * 14 13 12 45 45 H 1.08991 * 109.70248 * 174.48996 * 14 13 12 46 46 H 0.96999 * 119.99703 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.57936 * 293.81688 * 24 15 14 48 48 H 1.08998 * 109.70328 * 173.46620 * 24 15 14 49 49 H 1.09001 * 109.50163 * 301.33981 * 25 12 11 50 50 H 1.09001 * 109.49262 * 61.43753 * 25 12 11 51 51 H 1.08000 * 120.00835 * 179.97438 * 26 6 5 52 52 H 1.08001 * 120.00241 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7248 3.3753 -1.1972 6 6 2.9542 4.0272 0.0000 7 6 3.4557 5.4484 0.0000 8 1 3.2444 5.9082 0.9654 9 6 4.9651 5.4567 -0.2495 10 6 5.6801 4.7886 0.9267 11 7 2.7797 6.2061 -1.0616 12 6 2.7168 7.6357 -0.7297 13 6 1.4868 7.9035 0.1406 14 6 1.4434 9.3887 0.5135 15 7 1.4963 10.1873 -0.7188 16 6 0.5446 11.1378 -0.9754 17 1 -0.4706 10.9906 -0.6374 18 6 0.8846 12.2906 -1.6699 19 7 2.1493 12.6299 -1.8028 20 14 -0.4528 13.3603 -2.4159 21 1 -1.7819 12.7638 -2.1281 22 1 -0.3830 14.7221 -1.8279 23 1 -0.2566 13.4452 -3.8855 24 6 2.5892 9.9461 -1.6706 25 6 2.6197 8.4547 -2.0189 26 6 2.7235 3.3758 1.1971 27 6 2.2628 2.0724 1.1971 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0920 1.5601 -2.1324 34 1 2.9047 3.8844 -2.1325 35 1 5.1849 4.9098 -1.1664 36 1 5.3114 6.4855 -0.3482 37 1 6.7585 4.8668 0.7882 38 1 5.3959 5.2854 1.8543 39 1 5.3953 3.7376 0.9754 40 1 3.2308 6.0612 -1.9526 41 1 3.6164 7.9219 -0.1846 42 1 0.5853 7.6408 -0.4130 43 1 1.5452 7.3022 1.0479 44 1 2.2988 9.6323 1.1437 45 1 0.5202 9.6059 1.0504 46 1 2.3869 13.4353 -2.2884 47 1 3.5379 10.2353 -1.2184 48 1 2.4232 10.5295 -2.5762 49 1 3.4845 8.2458 -2.6487 50 1 1.7075 8.1869 -2.5521 51 1 2.9032 3.8850 2.1325 52 1 2.0825 1.5634 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:07 Heat of formation + Delta-G solvation = 20.022397 kcal Electronic energy + Delta-G solvation = -26837.247160 eV Core-core repulsion = 23414.747433 eV Total energy + Delta-G solvation = -3422.499727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.87830 -38.16328 -36.34275 -34.04781 -33.06249 -31.56039 -30.88485 -30.08926 -29.60613 -28.65894 -25.64297 -24.28797 -23.47683 -22.83946 -22.21935 -21.59043 -21.09250 -19.95523 -19.06158 -16.92819 -16.32050 -15.77485 -15.40520 -14.97822 -14.88303 -14.57717 -14.34162 -13.91433 -13.81325 -13.71975 -13.47247 -13.36023 -13.28917 -13.02631 -12.59147 -12.47777 -12.38511 -12.03352 -11.87223 -11.72496 -11.46584 -11.33071 -11.29106 -11.08936 -11.04089 -10.85287 -10.74800 -10.68962 -10.55220 -10.27957 -10.15720 -9.93428 -9.57284 -9.40995 -8.88183 -8.50328 -8.44631 -8.10200 -6.57014 -5.77151 -3.23210 1.35601 1.44113 3.38236 3.46276 3.49219 3.73738 4.34210 4.52046 4.61169 4.70356 4.82310 4.90528 4.99588 5.06741 5.11204 5.15893 5.32687 5.34568 5.39535 5.44262 5.46075 5.49316 5.57405 5.60895 5.66376 5.69903 5.77238 5.80491 5.86553 5.95777 5.97267 6.01682 6.06482 6.08636 6.18059 6.20694 6.38521 6.42981 6.50900 6.58260 6.59466 6.66050 6.69205 6.75089 6.88296 7.02808 7.09750 7.35789 7.40118 7.61794 7.66343 7.84532 8.51127 9.24764 9.87135 10.47551 11.31455 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002703 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.094854 B =10356.835400 C =11092.391369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.095 4.095 6 C -0.058 4.058 7 C 0.124 3.876 8 H 0.084 0.916 9 C -0.148 4.148 10 C -0.148 4.148 11 N -0.680 5.680 12 C 0.098 3.902 13 C -0.116 4.116 14 C 0.145 3.855 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.063 0.937 18 C 0.006 3.994 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.178 3.822 25 C -0.141 4.141 26 C -0.113 4.113 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.335 0.665 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.013 0.987 45 H 0.054 0.946 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.063 0.937 51 H 0.117 0.883 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -23.511 3.709 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.138 4.138 5 C -0.113 4.113 6 C -0.059 4.059 7 C 0.014 3.986 8 H 0.103 0.897 9 C -0.187 4.187 10 C -0.206 4.206 11 N -0.309 5.309 12 C -0.011 4.011 13 C -0.156 4.156 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.051 3.949 25 C -0.180 4.180 26 C -0.132 4.132 27 C -0.138 4.138 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.154 0.846 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.097 0.903 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.135 0.865 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.687 -23.467 3.863 24.067 hybrid contribution 0.350 0.921 -0.581 1.144 sum 4.037 -22.545 3.282 23.138 Atomic orbital electron populations 1.21751 0.94833 1.01432 1.02401 1.20510 0.96140 0.92942 1.02417 1.19812 0.99983 0.96152 0.93314 1.20975 1.00535 0.95066 0.97243 1.20884 0.98621 0.93886 0.97909 1.19781 0.98042 0.95042 0.92996 1.20562 0.90612 0.90650 0.96771 0.89749 1.22233 0.95914 1.01277 0.99267 1.21721 0.99819 1.00886 0.98125 1.60721 1.56407 1.09667 1.04152 1.21462 0.97346 0.85126 0.97139 1.22004 0.97779 0.97902 0.97878 1.20936 0.98597 0.89227 0.89432 1.43984 1.29783 1.40799 1.16719 1.19179 0.89324 0.96004 1.33812 0.91945 1.25164 0.95875 0.96291 1.02016 1.70046 1.15460 1.25097 1.43896 0.86260 0.81665 0.80192 0.78887 1.20155 1.21712 1.21562 1.20630 0.90211 0.89272 0.94762 1.22394 1.00496 0.99665 0.95471 1.20968 0.99917 0.94799 0.97511 1.20905 1.00645 0.94964 0.97255 0.92548 0.92481 0.92644 0.91376 0.91344 0.86603 0.86235 0.91837 0.91545 0.92992 0.92710 0.92466 0.84595 0.94516 0.91843 0.93694 0.96878 0.92776 0.93742 0.96500 0.90338 0.93718 0.91842 0.86467 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.08 -0.65 6.07 -27.88 -0.17 -0.82 16 3 C -0.09 -0.93 5.13 -104.63 -0.54 -1.47 16 4 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 5 C -0.09 -1.10 9.32 -39.58 -0.37 -1.47 16 6 C -0.06 -0.69 4.26 -104.62 -0.45 -1.13 16 7 C 0.12 1.53 2.05 -68.86 -0.14 1.39 16 8 H 0.08 1.12 7.00 -51.93 -0.36 0.76 16 9 C -0.15 -1.62 5.34 -26.74 -0.14 -1.76 16 10 C -0.15 -1.44 9.53 37.16 0.35 -1.09 16 11 N -0.68 -9.57 5.48 -100.91 -0.55 -10.12 16 12 C 0.10 1.65 2.25 -67.68 -0.15 1.50 16 13 C -0.12 -2.12 5.57 -26.61 -0.15 -2.27 16 14 C 0.14 3.13 6.52 -3.71 -0.02 3.11 16 15 N -0.59 -15.00 2.96 -172.32 -0.51 -15.51 16 16 C -0.25 -7.06 9.53 -15.06 -0.14 -7.21 16 17 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 18 C 0.01 0.16 4.89 -17.43 -0.09 0.07 16 19 N -0.90 -26.42 11.53 55.49 0.64 -25.78 16 20 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.18 4.24 5.27 -3.71 -0.02 4.22 16 25 C -0.14 -2.66 5.36 -26.61 -0.14 -2.80 16 26 C -0.11 -1.26 8.91 -39.58 -0.35 -1.61 16 27 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.32 7.31 -52.49 -0.38 0.94 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.79 7.54 -51.93 -0.39 0.40 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.56 7.06 -51.93 -0.37 0.19 16 40 H 0.34 4.39 7.49 -39.29 -0.29 4.09 16 41 H 0.04 0.64 7.25 -51.93 -0.38 0.26 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.04 0.75 7.47 -51.93 -0.39 0.36 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 2.09 6.43 -51.93 -0.33 1.75 16 49 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 50 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 51 H 0.12 1.17 8.04 -52.49 -0.42 0.75 16 52 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -29.53 401.71 -11.93 -41.46 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -9.61 Total: 2.40 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.92 Total: -15.36 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.42 Total: -51.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.53 -11.93 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.483 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds