Wall clock time and date at job start Tue Mar 31 2020 10:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47015 * 2 1 4 4 C 1.38242 * 120.00021 * 269.72561 * 3 2 1 5 5 C 1.38230 * 120.00031 * 179.79122 * 4 3 2 6 6 C 1.38237 * 119.99673 * 0.43711 * 5 4 3 7 7 C 1.50708 * 119.99884 * 179.83280 * 6 5 4 8 8 H 1.08994 * 109.47119 * 159.97963 * 7 6 5 9 9 C 1.52996 * 109.47220 * 279.98452 * 7 6 5 10 10 C 1.52996 * 109.47101 * 294.41683 * 9 7 6 11 11 N 1.46903 * 109.46842 * 39.98504 * 7 6 5 12 12 C 1.46894 * 111.00084 * 152.97119 * 11 7 6 13 13 C 1.53038 * 109.46218 * 274.58312 * 12 11 7 14 14 C 1.53194 * 109.31729 * 178.61274 * 13 12 11 15 15 N 1.46933 * 108.77198 * 54.63113 * 14 13 12 16 16 C 1.36933 * 120.62663 * 126.37215 * 15 14 13 17 17 H 1.08005 * 119.99932 * 327.00370 * 16 15 14 18 18 C 1.38815 * 120.00235 * 147.00897 * 16 15 14 19 19 N 1.31618 * 119.99414 * 343.71402 * 18 16 15 20 20 Si 1.86797 * 120.00409 * 163.71905 * 18 16 15 21 21 H 1.48498 * 109.47088 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47118 * 119.99983 * 20 18 16 23 23 H 1.48500 * 109.47188 * 239.99647 * 20 18 16 24 24 C 1.46924 * 118.74099 * 306.39783 * 15 14 13 25 25 C 1.53041 * 109.46187 * 154.51091 * 12 11 7 26 26 C 1.38227 * 120.00572 * 359.81894 * 6 5 4 27 27 C 1.38229 * 120.00052 * 90.00343 * 3 2 1 28 28 H 1.08996 * 109.47183 * 300.00069 * 1 2 3 29 29 H 1.09004 * 109.46842 * 60.00109 * 1 2 3 30 30 H 1.09003 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47402 * 120.00158 * 2 1 3 32 32 H 1.09005 * 109.46664 * 240.00161 * 2 1 3 33 33 H 1.07997 * 119.99805 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00298 * 180.27821 * 5 4 3 35 35 H 1.09002 * 109.47519 * 54.42062 * 9 7 6 36 36 H 1.09004 * 109.46884 * 174.41463 * 9 7 6 37 37 H 1.09005 * 109.47176 * 184.59426 * 10 9 7 38 38 H 1.08997 * 109.47134 * 304.58891 * 10 9 7 39 39 H 1.08998 * 109.47426 * 64.59306 * 10 9 7 40 40 H 1.00907 * 110.99873 * 276.92454 * 11 7 6 41 41 H 1.09006 * 109.45903 * 34.54057 * 12 11 7 42 42 H 1.09002 * 109.49375 * 298.56537 * 13 12 11 43 43 H 1.09004 * 109.49975 * 58.65985 * 13 12 11 44 44 H 1.08999 * 109.58487 * 294.85007 * 14 13 12 45 45 H 1.08991 * 109.70248 * 174.48996 * 14 13 12 46 46 H 0.96999 * 119.99703 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.57936 * 293.81688 * 24 15 14 48 48 H 1.08998 * 109.70328 * 173.46620 * 24 15 14 49 49 H 1.09001 * 109.50163 * 301.33981 * 25 12 11 50 50 H 1.09001 * 109.49262 * 61.43753 * 25 12 11 51 51 H 1.08000 * 120.00835 * 179.97438 * 26 6 5 52 52 H 1.08001 * 120.00241 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7248 3.3753 -1.1972 6 6 2.9542 4.0272 0.0000 7 6 3.4557 5.4484 0.0000 8 1 3.2444 5.9082 0.9654 9 6 4.9651 5.4567 -0.2495 10 6 5.6801 4.7886 0.9267 11 7 2.7797 6.2061 -1.0616 12 6 2.7168 7.6357 -0.7297 13 6 1.4868 7.9035 0.1406 14 6 1.4434 9.3887 0.5135 15 7 1.4963 10.1873 -0.7188 16 6 0.5446 11.1378 -0.9754 17 1 -0.4706 10.9906 -0.6374 18 6 0.8846 12.2906 -1.6699 19 7 2.1493 12.6299 -1.8028 20 14 -0.4528 13.3603 -2.4159 21 1 -1.7819 12.7638 -2.1281 22 1 -0.3830 14.7221 -1.8279 23 1 -0.2566 13.4452 -3.8855 24 6 2.5892 9.9461 -1.6706 25 6 2.6197 8.4547 -2.0189 26 6 2.7235 3.3758 1.1971 27 6 2.2628 2.0724 1.1971 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0920 1.5601 -2.1324 34 1 2.9047 3.8844 -2.1325 35 1 5.1849 4.9098 -1.1664 36 1 5.3114 6.4855 -0.3482 37 1 6.7585 4.8668 0.7882 38 1 5.3959 5.2854 1.8543 39 1 5.3953 3.7376 0.9754 40 1 3.2308 6.0612 -1.9526 41 1 3.6164 7.9219 -0.1846 42 1 0.5853 7.6408 -0.4130 43 1 1.5452 7.3022 1.0479 44 1 2.2988 9.6323 1.1437 45 1 0.5202 9.6059 1.0504 46 1 2.3869 13.4353 -2.2884 47 1 3.5379 10.2353 -1.2184 48 1 2.4232 10.5295 -2.5762 49 1 3.4845 8.2458 -2.6487 50 1 1.7075 8.1869 -2.5521 51 1 2.9032 3.8850 2.1325 52 1 2.0825 1.5634 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:06 Heat of formation + Delta-G solvation = 6.235410 kcal Electronic energy + Delta-G solvation = -26837.845009 eV Core-core repulsion = 23414.747433 eV Total energy + Delta-G solvation = -3423.097576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.77490 -39.53167 -37.62313 -35.32544 -34.17864 -33.13434 -31.76850 -31.63399 -30.89553 -29.87068 -27.02423 -25.75931 -24.28562 -23.96316 -23.57506 -23.02560 -22.11797 -20.85992 -20.72124 -18.75590 -17.43091 -16.92632 -16.58095 -16.26117 -16.01300 -15.74086 -15.55900 -15.33809 -15.21069 -14.81982 -14.54178 -14.45119 -14.30243 -14.12627 -14.00617 -13.80763 -13.33345 -13.14582 -13.10502 -12.99746 -12.72525 -12.64910 -12.50082 -12.39826 -12.24633 -12.04928 -12.01777 -11.97299 -11.85461 -11.73426 -11.57101 -11.47660 -11.23406 -11.10586 -10.57199 -9.69430 -9.39363 -9.19338 -8.63406 -7.89510 -5.39415 0.54085 0.62877 1.44681 1.46584 1.57726 2.49944 2.89436 3.18731 3.29509 3.68943 3.81651 3.91708 4.01464 4.04866 4.11150 4.13279 4.21439 4.28192 4.38049 4.41677 4.52179 4.55402 4.56477 4.60680 4.69290 4.70481 4.77038 4.78984 4.86702 4.89914 4.99588 5.03950 5.07340 5.10102 5.11191 5.12277 5.17839 5.25780 5.26987 5.31076 5.36707 5.39592 5.42469 5.48143 5.63241 5.65251 5.71777 5.81479 5.83256 6.19424 6.25685 6.40554 6.52524 7.14630 7.83912 8.39064 9.16834 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002703 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.094854 B =10356.835400 C =11092.391369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.096 4.096 4 C -0.129 4.129 5 C -0.107 4.107 6 C -0.070 4.070 7 C 0.129 3.871 8 H 0.075 0.925 9 C -0.143 4.143 10 C -0.143 4.143 11 N -0.678 5.678 12 C 0.111 3.889 13 C -0.102 4.102 14 C 0.142 3.858 15 N -0.609 5.609 16 C -0.267 4.267 17 H 0.060 0.940 18 C -0.045 4.045 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.184 3.816 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.125 4.125 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.344 0.656 41 H 0.034 0.966 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.011 0.989 45 H 0.051 0.949 46 H 0.251 0.749 47 H -0.003 1.003 48 H 0.045 0.955 49 H 0.068 0.932 50 H 0.054 0.946 51 H 0.125 0.875 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -25.795 3.949 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.147 4.147 5 C -0.126 4.126 6 C -0.071 4.071 7 C 0.020 3.980 8 H 0.094 0.906 9 C -0.182 4.182 10 C -0.201 4.201 11 N -0.308 5.308 12 C 0.002 3.998 13 C -0.141 4.141 14 C 0.016 3.984 15 N -0.332 5.332 16 C -0.397 4.397 17 H 0.078 0.922 18 C -0.241 4.241 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.058 3.942 25 C -0.165 4.165 26 C -0.141 4.141 27 C -0.143 4.143 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.163 0.837 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.029 0.971 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.015 0.985 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.143 0.857 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.422 -25.786 4.114 26.336 hybrid contribution 0.438 1.566 -0.602 1.734 sum 3.860 -24.220 3.512 24.776 Atomic orbital electron populations 1.21738 0.94667 1.02229 1.01661 1.20553 0.96167 0.91670 1.03469 1.20124 0.99170 0.97224 0.93043 1.21202 1.00353 0.94901 0.98219 1.20998 0.99163 0.94506 0.97885 1.19742 0.99108 0.94698 0.93542 1.20519 0.91317 0.90701 0.95494 0.90646 1.22164 0.95028 1.00877 1.00114 1.21678 1.00152 1.00735 0.97535 1.60609 1.57355 1.07644 1.05183 1.21171 0.96478 0.86659 0.95531 1.21805 0.97885 0.95534 0.98924 1.21050 0.98304 0.90855 0.88147 1.44252 1.29623 1.41002 1.18367 1.19462 0.89868 0.96642 1.33726 0.92206 1.25915 0.97904 0.97654 1.02664 1.70183 1.17275 1.25574 1.44775 0.85236 0.79415 0.78227 0.77740 1.19159 1.21675 1.21459 1.20451 0.88814 0.92041 0.92901 1.22147 1.01130 0.96336 0.96863 1.21135 0.99988 0.95339 0.97591 1.21168 1.00169 0.94790 0.98210 0.93146 0.93344 0.91123 0.90226 0.90435 0.85278 0.86154 0.91295 0.92536 0.92192 0.92668 0.92352 0.83677 0.94766 0.93118 0.91535 0.97115 0.93041 0.94022 0.98505 0.93670 0.91305 0.92722 0.85702 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.89 71.98 0.71 -1.18 16 2 C -0.08 -1.07 6.07 29.85 0.18 -0.89 16 3 C -0.10 -1.72 5.13 -19.87 -0.10 -1.83 16 4 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 5 C -0.11 -2.33 9.32 22.27 0.21 -2.12 16 6 C -0.07 -1.56 4.26 -19.86 -0.08 -1.65 16 7 C 0.13 3.00 2.05 44.17 0.09 3.09 16 8 H 0.08 1.89 7.00 -2.39 -0.02 1.87 16 9 C -0.14 -2.92 5.34 30.59 0.16 -2.76 16 10 C -0.14 -2.55 9.53 71.98 0.69 -1.87 16 11 N -0.68 -18.09 5.48 -473.17 -2.59 -20.68 16 12 C 0.11 3.64 2.25 44.94 0.10 3.74 16 13 C -0.10 -3.65 5.57 30.67 0.17 -3.48 16 14 C 0.14 6.18 6.52 86.36 0.56 6.75 16 15 N -0.61 -31.55 2.96 -699.09 -2.07 -33.62 16 16 C -0.27 -15.12 9.53 84.03 0.80 -14.32 16 17 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 18 C -0.05 -2.58 4.89 84.86 0.42 -2.17 16 19 N -0.93 -56.06 11.53 21.65 0.25 -55.81 16 20 Si 0.97 45.58 29.58 68.60 2.03 47.61 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 C 0.18 9.00 5.27 86.36 0.46 9.46 16 25 C -0.13 -4.69 5.36 30.67 0.16 -4.53 16 26 C -0.12 -2.50 8.91 22.27 0.20 -2.30 16 27 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 32 H 0.08 0.89 8.08 -2.38 -0.02 0.87 16 33 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.12 2.50 7.31 -2.91 -0.02 2.48 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.27 7.54 -2.38 -0.02 1.25 16 37 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.03 7.06 -2.39 -0.02 1.02 16 40 H 0.34 8.39 7.49 -89.69 -0.67 7.72 16 41 H 0.03 1.16 7.25 -2.38 -0.02 1.14 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 2.10 7.47 -2.39 -0.02 2.09 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 46 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 48 H 0.04 2.48 6.43 -2.39 -0.02 2.47 16 49 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 50 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 51 H 0.13 2.28 8.04 -2.91 -0.02 2.25 16 52 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -63.83 401.71 2.96 -60.87 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.19 Total: 22.07 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.15 Total: -20.44 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -4.42 Total: -110.11 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -63.83 2.96 -60.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.102 kcal (2) G-P(sol) polarization free energy of solvation -63.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds