Wall clock time and date at job start Tue Mar 31 2020 10:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46827 * 2 1 4 4 C 1.38236 * 119.99842 * 269.71861 * 3 2 1 5 5 C 1.38242 * 119.99611 * 179.76744 * 4 3 2 6 6 C 1.38233 * 119.99914 * 0.51157 * 5 4 3 7 7 C 1.50703 * 119.99709 * 179.71876 * 6 5 4 8 8 H 1.09000 * 109.47299 * 200.02258 * 7 6 5 9 9 C 1.53000 * 109.46637 * 80.02596 * 7 6 5 10 10 C 1.53003 * 109.47161 * 175.81352 * 9 7 6 11 11 N 1.46895 * 109.47476 * 320.02716 * 7 6 5 12 12 C 1.46902 * 110.99875 * 273.76067 * 11 7 6 13 13 C 1.53036 * 109.45911 * 275.83990 * 12 11 7 14 14 C 1.53193 * 109.31311 * 178.60120 * 13 12 11 15 15 N 1.46928 * 108.76440 * 54.65713 * 14 13 12 16 16 C 1.36934 * 120.62929 * 126.36302 * 15 14 13 17 17 H 1.08001 * 119.99880 * 209.89183 * 16 15 14 18 18 C 1.38813 * 120.00180 * 29.89582 * 16 15 14 19 19 N 1.31616 * 120.00006 * 19.05530 * 18 16 15 20 20 Si 1.86802 * 119.99904 * 199.05135 * 18 16 15 21 21 H 1.48499 * 109.46877 * 94.98559 * 20 18 16 22 22 H 1.48501 * 109.46668 * 214.98296 * 20 18 16 23 23 H 1.48493 * 109.47151 * 334.98301 * 20 18 16 24 24 C 1.46921 * 118.73668 * 306.38203 * 15 14 13 25 25 C 1.53045 * 109.45947 * 155.78635 * 12 11 7 26 26 C 1.38233 * 120.00142 * 359.74913 * 6 5 4 27 27 C 1.38230 * 119.99967 * 359.97438 * 26 6 5 28 28 H 1.08999 * 109.47207 * 60.00086 * 1 2 3 29 29 H 1.09003 * 109.47407 * 300.00461 * 1 2 3 30 30 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46696 * 119.99394 * 2 1 3 32 32 H 1.08995 * 109.47279 * 240.00170 * 2 1 3 33 33 H 1.07988 * 120.00178 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.99749 * 180.23237 * 5 4 3 35 35 H 1.09002 * 109.47447 * 295.81329 * 9 7 6 36 36 H 1.09003 * 109.47513 * 55.81439 * 9 7 6 37 37 H 1.08998 * 109.46927 * 65.81549 * 10 9 7 38 38 H 1.08995 * 109.47545 * 185.81536 * 10 9 7 39 39 H 1.08998 * 109.47001 * 305.82068 * 10 9 7 40 40 H 1.00900 * 111.00209 * 149.80208 * 11 7 6 41 41 H 1.08996 * 109.46151 * 35.81358 * 12 11 7 42 42 H 1.09002 * 109.50207 * 298.56506 * 13 12 11 43 43 H 1.09006 * 109.49853 * 58.66607 * 13 12 11 44 44 H 1.09004 * 109.59732 * 294.87321 * 14 13 12 45 45 H 1.09002 * 109.70480 * 174.50832 * 14 13 12 46 46 H 0.96995 * 120.00426 * 180.02562 * 19 18 16 47 47 H 1.09005 * 109.59103 * 293.82414 * 24 15 14 48 48 H 1.09005 * 109.70584 * 173.46571 * 24 15 14 49 49 H 1.08997 * 109.49839 * 301.34008 * 25 12 11 50 50 H 1.08999 * 109.49776 * 61.40035 * 25 12 11 51 51 H 1.08005 * 119.99695 * 179.97438 * 26 6 5 52 52 H 1.08009 * 119.99722 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1971 6 6 2.9546 4.0272 0.0000 7 6 3.4579 5.4477 0.0000 8 1 3.9105 5.6728 0.9657 9 6 2.2892 6.4027 -0.2505 10 6 2.7804 7.8480 -0.1471 11 7 4.4606 5.6119 -1.0609 12 6 5.7979 5.2343 -0.5844 13 6 6.4356 6.4225 0.1391 14 6 7.8154 6.0144 0.6649 15 7 8.6116 5.4913 -0.4537 16 6 9.8513 6.0043 -0.7275 17 1 10.2231 6.0059 -1.7415 18 6 10.6302 6.5223 0.2981 19 7 10.3732 6.1982 1.5476 20 14 12.0431 7.6793 -0.0951 21 1 11.5797 9.0850 0.0244 22 1 13.1567 7.4424 0.8583 23 1 12.5161 7.4300 -1.4805 24 6 8.0522 4.4076 -1.2730 25 6 6.6696 4.8336 -1.7768 26 6 2.7238 3.3756 1.1972 27 6 2.2623 2.0727 1.1971 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 2.0921 1.5601 -2.1324 34 1 2.9050 3.8844 -2.1324 35 1 1.8837 6.2272 -1.2470 36 1 1.5120 6.2290 0.4937 37 1 3.4817 8.0522 -0.9561 38 1 1.9310 8.5268 -0.2227 39 1 3.2786 7.9947 0.8112 40 1 4.4572 6.5554 -1.4187 41 1 5.7142 4.3928 0.1032 42 1 6.5426 7.2563 -0.5548 43 1 5.8024 6.7225 0.9742 44 1 7.7029 5.2421 1.4259 45 1 8.3159 6.8816 1.0955 46 1 10.9172 6.5604 2.2643 47 1 7.9590 3.5043 -0.6700 48 1 8.7069 4.2137 -2.1227 49 1 6.2030 4.0026 -2.3056 50 1 6.7738 5.6823 -2.4528 51 1 2.9042 3.8847 2.1325 52 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:09 Heat of formation + Delta-G solvation = 20.800227 kcal Electronic energy + Delta-G solvation = -27149.055738 eV Core-core repulsion = 23726.589740 eV Total energy + Delta-G solvation = -3422.465998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.76814 -38.15204 -36.30681 -33.97071 -33.18148 -31.36498 -30.80394 -30.00321 -29.70923 -28.53067 -25.82348 -24.36769 -23.30077 -22.66229 -22.07964 -21.42474 -21.20378 -19.94851 -19.11671 -16.80785 -16.29606 -15.90489 -15.29865 -15.07758 -14.81002 -14.68774 -13.90421 -13.78911 -13.71908 -13.51938 -13.48887 -13.35212 -13.19118 -12.91489 -12.90111 -12.52630 -12.31663 -12.18122 -11.93731 -11.50215 -11.42370 -11.33888 -11.18239 -10.96410 -10.89913 -10.80473 -10.70769 -10.66759 -10.53595 -10.35547 -10.12144 -9.97852 -9.65257 -9.46544 -8.78325 -8.47289 -8.39444 -8.02282 -6.61736 -5.77192 -3.19461 1.42994 1.55055 3.38478 3.45808 3.47422 3.83388 4.36925 4.52009 4.66887 4.79200 4.85540 4.99410 5.05867 5.11448 5.15182 5.21838 5.35541 5.38123 5.41449 5.47616 5.53971 5.59212 5.59713 5.65263 5.71507 5.73396 5.80747 5.88484 5.89377 5.97417 6.00431 6.02444 6.13899 6.17857 6.21099 6.23739 6.38006 6.50491 6.53542 6.61151 6.63378 6.69533 6.73452 6.84385 6.88908 7.06486 7.13388 7.33665 7.44750 7.60070 7.73307 7.83490 8.48612 9.23919 9.87847 10.46648 11.31405 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.003037 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.414985 B = 9217.474667 C = 9989.913593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.125 4.125 5 C -0.081 4.081 6 C -0.071 4.071 7 C 0.124 3.876 8 H 0.053 0.947 9 C -0.119 4.119 10 C -0.156 4.156 11 N -0.682 5.682 12 C 0.098 3.902 13 C -0.165 4.165 14 C 0.178 3.822 15 N -0.591 5.591 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.145 3.855 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.339 0.661 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.016 0.984 45 H 0.079 0.921 46 H 0.253 0.747 47 H 0.015 0.985 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.116 0.884 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.091 -5.703 -2.734 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.143 4.143 5 C -0.100 4.100 6 C -0.072 4.072 7 C 0.014 3.986 8 H 0.071 0.929 9 C -0.157 4.157 10 C -0.214 4.214 11 N -0.313 5.313 12 C -0.011 4.011 13 C -0.206 4.206 14 C 0.051 3.949 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.203 1.203 24 C 0.018 3.982 25 C -0.155 4.155 26 C -0.134 4.134 27 C -0.140 4.140 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.134 0.866 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.114 -6.268 -2.884 22.213 hybrid contribution 1.053 1.378 0.613 1.839 sum -20.061 -4.891 -2.271 20.773 Atomic orbital electron populations 1.21738 0.94994 1.01397 1.02115 1.20518 0.95938 0.93070 1.02632 1.19824 0.99826 0.95992 0.93357 1.21024 1.00894 0.95267 0.97147 1.20990 0.96659 0.93894 0.98419 1.19846 0.98634 0.95725 0.92985 1.20422 0.92300 0.91156 0.94697 0.92878 1.21675 0.97371 0.94104 1.02553 1.21843 1.01272 0.96128 1.02155 1.60719 1.05472 1.30883 1.34231 1.21489 0.86299 0.97106 0.96195 1.22835 1.00315 0.98122 0.99351 1.20605 0.86997 0.98324 0.88936 1.44032 1.15882 1.37622 1.33849 1.19181 0.92390 1.34361 0.92328 0.91797 1.25070 0.97620 1.01307 0.95550 1.70068 1.41292 1.44458 0.98628 0.86316 0.81865 0.81276 0.77609 1.21532 1.21818 1.20326 1.20917 0.92090 0.90676 0.94473 1.21955 0.96439 1.00361 0.96769 1.21011 0.99955 0.94853 0.97596 1.20887 1.00974 0.94887 0.97272 0.92630 0.92678 0.92653 0.91285 0.91227 0.86639 0.85366 0.91142 0.91596 0.92358 0.92549 0.92589 0.84047 0.91399 0.92647 0.93869 0.96575 0.90315 0.93727 0.96705 0.92808 0.92720 0.92651 0.86571 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.74 16 2 C -0.08 -0.74 6.07 -27.88 -0.17 -0.91 16 3 C -0.09 -1.01 5.13 -104.62 -0.54 -1.54 16 4 C -0.13 -1.46 9.70 -39.58 -0.38 -1.84 16 5 C -0.08 -1.03 9.32 -39.58 -0.37 -1.40 16 6 C -0.07 -0.92 4.67 -104.62 -0.49 -1.41 16 7 C 0.12 1.56 2.05 -68.87 -0.14 1.42 16 8 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 9 C -0.12 -1.24 5.51 -26.73 -0.15 -1.39 16 10 C -0.16 -1.55 9.62 37.16 0.36 -1.20 16 11 N -0.68 -9.44 5.30 -100.91 -0.53 -9.97 16 12 C 0.10 1.68 2.24 -67.67 -0.15 1.52 16 13 C -0.17 -3.13 5.31 -26.61 -0.14 -3.27 16 14 C 0.18 4.29 5.31 -3.71 -0.02 4.27 16 15 N -0.59 -15.04 2.98 -172.31 -0.51 -15.56 16 16 C -0.25 -7.05 9.55 -15.06 -0.14 -7.19 16 17 H 0.06 1.76 7.90 -52.49 -0.41 1.35 16 18 C 0.00 0.10 4.84 -17.43 -0.08 0.01 16 19 N -0.90 -26.54 11.47 55.49 0.64 -25.90 16 20 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 C 0.15 3.15 6.51 -3.71 -0.02 3.13 16 25 C -0.12 -2.09 5.69 -26.61 -0.15 -2.24 16 26 C -0.12 -1.44 9.67 -39.59 -0.38 -1.83 16 27 C -0.12 -1.42 9.70 -39.59 -0.38 -1.80 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.61 7.72 -52.49 -0.41 1.20 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.59 6.60 -51.93 -0.34 0.25 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.34 4.52 6.26 -39.29 -0.25 4.28 16 41 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.75 7.37 -51.93 -0.38 0.37 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 2.12 6.26 -51.93 -0.33 1.79 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.12 1.33 8.04 -52.48 -0.42 0.91 16 52 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -29.42 402.44 -11.97 -41.39 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -9.60 Total: 3.50 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.99 Total: -16.40 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.41 Total: -51.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.42 -11.97 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.191 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds