Wall clock time and date at job start Tue Mar 31 2020 10:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46827 * 2 1 4 4 C 1.38236 * 119.99842 * 269.71861 * 3 2 1 5 5 C 1.38242 * 119.99611 * 179.76744 * 4 3 2 6 6 C 1.38233 * 119.99914 * 0.51157 * 5 4 3 7 7 C 1.50703 * 119.99709 * 179.71876 * 6 5 4 8 8 H 1.09000 * 109.47299 * 200.02258 * 7 6 5 9 9 C 1.53000 * 109.46637 * 80.02596 * 7 6 5 10 10 C 1.53003 * 109.47161 * 175.81352 * 9 7 6 11 11 N 1.46895 * 109.47476 * 320.02716 * 7 6 5 12 12 C 1.46902 * 110.99875 * 273.76067 * 11 7 6 13 13 C 1.53036 * 109.45911 * 275.83990 * 12 11 7 14 14 C 1.53193 * 109.31311 * 178.60120 * 13 12 11 15 15 N 1.46928 * 108.76440 * 54.65713 * 14 13 12 16 16 C 1.36934 * 120.62929 * 126.36302 * 15 14 13 17 17 H 1.08001 * 119.99880 * 209.89183 * 16 15 14 18 18 C 1.38813 * 120.00180 * 29.89582 * 16 15 14 19 19 N 1.31616 * 120.00006 * 19.05530 * 18 16 15 20 20 Si 1.86802 * 119.99904 * 199.05135 * 18 16 15 21 21 H 1.48499 * 109.46877 * 94.98559 * 20 18 16 22 22 H 1.48501 * 109.46668 * 214.98296 * 20 18 16 23 23 H 1.48493 * 109.47151 * 334.98301 * 20 18 16 24 24 C 1.46921 * 118.73668 * 306.38203 * 15 14 13 25 25 C 1.53045 * 109.45947 * 155.78635 * 12 11 7 26 26 C 1.38233 * 120.00142 * 359.74913 * 6 5 4 27 27 C 1.38230 * 119.99967 * 359.97438 * 26 6 5 28 28 H 1.08999 * 109.47207 * 60.00086 * 1 2 3 29 29 H 1.09003 * 109.47407 * 300.00461 * 1 2 3 30 30 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46696 * 119.99394 * 2 1 3 32 32 H 1.08995 * 109.47279 * 240.00170 * 2 1 3 33 33 H 1.07988 * 120.00178 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.99749 * 180.23237 * 5 4 3 35 35 H 1.09002 * 109.47447 * 295.81329 * 9 7 6 36 36 H 1.09003 * 109.47513 * 55.81439 * 9 7 6 37 37 H 1.08998 * 109.46927 * 65.81549 * 10 9 7 38 38 H 1.08995 * 109.47545 * 185.81536 * 10 9 7 39 39 H 1.08998 * 109.47001 * 305.82068 * 10 9 7 40 40 H 1.00900 * 111.00209 * 149.80208 * 11 7 6 41 41 H 1.08996 * 109.46151 * 35.81358 * 12 11 7 42 42 H 1.09002 * 109.50207 * 298.56506 * 13 12 11 43 43 H 1.09006 * 109.49853 * 58.66607 * 13 12 11 44 44 H 1.09004 * 109.59732 * 294.87321 * 14 13 12 45 45 H 1.09002 * 109.70480 * 174.50832 * 14 13 12 46 46 H 0.96995 * 120.00426 * 180.02562 * 19 18 16 47 47 H 1.09005 * 109.59103 * 293.82414 * 24 15 14 48 48 H 1.09005 * 109.70584 * 173.46571 * 24 15 14 49 49 H 1.08997 * 109.49839 * 301.34008 * 25 12 11 50 50 H 1.08999 * 109.49776 * 61.40035 * 25 12 11 51 51 H 1.08005 * 119.99695 * 179.97438 * 26 6 5 52 52 H 1.08009 * 119.99722 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1971 6 6 2.9546 4.0272 0.0000 7 6 3.4579 5.4477 0.0000 8 1 3.9105 5.6728 0.9657 9 6 2.2892 6.4027 -0.2505 10 6 2.7804 7.8480 -0.1471 11 7 4.4606 5.6119 -1.0609 12 6 5.7979 5.2343 -0.5844 13 6 6.4356 6.4225 0.1391 14 6 7.8154 6.0144 0.6649 15 7 8.6116 5.4913 -0.4537 16 6 9.8513 6.0043 -0.7275 17 1 10.2231 6.0059 -1.7415 18 6 10.6302 6.5223 0.2981 19 7 10.3732 6.1982 1.5476 20 14 12.0431 7.6793 -0.0951 21 1 11.5797 9.0850 0.0244 22 1 13.1567 7.4424 0.8583 23 1 12.5161 7.4300 -1.4805 24 6 8.0522 4.4076 -1.2730 25 6 6.6696 4.8336 -1.7768 26 6 2.7238 3.3756 1.1972 27 6 2.2623 2.0727 1.1971 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 2.0921 1.5601 -2.1324 34 1 2.9050 3.8844 -2.1324 35 1 1.8837 6.2272 -1.2470 36 1 1.5120 6.2290 0.4937 37 1 3.4817 8.0522 -0.9561 38 1 1.9310 8.5268 -0.2227 39 1 3.2786 7.9947 0.8112 40 1 4.4572 6.5554 -1.4187 41 1 5.7142 4.3928 0.1032 42 1 6.5426 7.2563 -0.5548 43 1 5.8024 6.7225 0.9742 44 1 7.7029 5.2421 1.4259 45 1 8.3159 6.8816 1.0955 46 1 10.9172 6.5604 2.2643 47 1 7.9590 3.5043 -0.6700 48 1 8.7069 4.2137 -2.1227 49 1 6.2030 4.0026 -2.3056 50 1 6.7738 5.6823 -2.4528 51 1 2.9042 3.8847 2.1325 52 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:08 Heat of formation + Delta-G solvation = 7.317617 kcal Electronic energy + Delta-G solvation = -27149.640388 eV Core-core repulsion = 23726.589740 eV Total energy + Delta-G solvation = -3423.050648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76082 -39.52978 -37.63935 -35.23157 -34.38676 -33.01861 -31.73236 -31.54466 -30.91920 -29.90970 -27.04380 -25.99432 -24.11364 -23.86452 -23.51557 -23.06407 -22.09052 -20.98946 -20.70443 -18.77590 -17.20423 -17.02048 -16.78966 -16.39939 -16.03719 -15.70377 -15.44180 -15.32931 -14.85452 -14.75140 -14.55629 -14.44546 -14.38703 -14.18807 -14.06203 -13.83924 -13.48031 -13.19453 -13.09109 -12.98841 -12.77398 -12.62497 -12.44333 -12.31522 -12.15133 -12.06663 -11.99475 -11.93516 -11.84830 -11.73015 -11.59739 -11.45401 -11.35014 -11.12391 -10.58157 -9.70321 -9.34265 -9.26375 -8.68605 -7.90052 -5.36357 0.52069 0.63006 1.44987 1.46113 1.56016 2.49643 2.91328 3.17635 3.27631 3.67634 3.82026 3.95986 3.98651 4.04316 4.13741 4.17053 4.23133 4.27597 4.37155 4.43041 4.47498 4.52680 4.56190 4.66666 4.69056 4.72446 4.77675 4.82132 4.83823 4.89005 4.92974 5.00160 5.10615 5.11347 5.13625 5.21606 5.22993 5.24759 5.25482 5.33362 5.35763 5.41203 5.42679 5.45032 5.62606 5.64227 5.67025 5.80671 5.82581 6.20842 6.24216 6.37518 6.56972 7.12567 7.83464 8.37553 9.16384 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.003037 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.414985 B = 9217.474667 C = 9989.913593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.132 4.132 5 C -0.091 4.091 6 C -0.085 4.085 7 C 0.127 3.873 8 H 0.039 0.961 9 C -0.111 4.111 10 C -0.155 4.155 11 N -0.669 5.669 12 C 0.114 3.886 13 C -0.148 4.148 14 C 0.186 3.814 15 N -0.608 5.608 16 C -0.265 4.265 17 H 0.065 0.935 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.142 3.858 25 C -0.101 4.101 26 C -0.130 4.130 27 C -0.130 4.130 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.346 0.654 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.057 0.943 44 H -0.010 1.010 45 H 0.045 0.955 46 H 0.250 0.750 47 H 0.005 0.995 48 H 0.054 0.946 49 H 0.074 0.926 50 H 0.056 0.944 51 H 0.119 0.881 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.680 -5.802 -4.048 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.150 4.150 5 C -0.110 4.110 6 C -0.086 4.086 7 C 0.017 3.983 8 H 0.057 0.943 9 C -0.149 4.149 10 C -0.212 4.212 11 N -0.301 5.301 12 C 0.004 3.996 13 C -0.189 4.189 14 C 0.059 3.941 15 N -0.332 5.332 16 C -0.395 4.395 17 H 0.083 0.917 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.016 3.984 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.148 4.148 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.167 0.833 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.008 0.992 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.023 0.977 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.075 0.925 51 H 0.137 0.863 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.733 -6.373 -4.225 23.984 hybrid contribution 1.514 1.317 1.042 2.261 sum -21.219 -5.056 -3.183 22.044 Atomic orbital electron populations 1.21711 0.94001 1.02315 1.01878 1.20569 0.96728 0.91580 1.03243 1.20140 0.99064 0.97116 0.93032 1.21270 1.00526 0.95080 0.98114 1.21066 0.97197 0.94469 0.98221 1.19911 0.99409 0.95881 0.93382 1.20436 0.92510 0.91930 0.93411 0.94278 1.21613 0.96500 0.93728 1.03022 1.21834 1.01786 0.96075 1.01553 1.60646 1.03721 1.31352 1.34358 1.21181 0.87726 0.95535 0.95178 1.22620 0.97448 0.98898 0.99902 1.20405 0.89274 0.96037 0.88379 1.44298 1.15737 1.38807 1.34328 1.19507 0.93319 1.34236 0.92442 0.91684 1.25854 1.00382 1.02874 0.95385 1.70216 1.42607 1.45707 0.99485 0.85267 0.78628 0.79010 0.77673 1.21194 1.22152 1.19092 1.21051 0.94132 0.89449 0.93797 1.21764 0.94317 1.01025 0.96958 1.21182 1.00463 0.95495 0.97744 1.21139 1.00703 0.94723 0.98273 0.92813 0.92970 0.91181 0.90766 0.90556 0.85041 0.85357 0.90632 0.90924 0.92582 0.90986 0.93423 0.83297 0.93047 0.92563 0.92392 0.99243 0.93653 0.94116 0.97677 0.92705 0.90747 0.92512 0.86266 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.08 -1.31 6.07 29.85 0.18 -1.13 16 3 C -0.09 -1.95 5.13 -19.86 -0.10 -2.05 16 4 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 5 C -0.09 -2.18 9.32 22.27 0.21 -1.98 16 6 C -0.09 -2.12 4.67 -19.87 -0.09 -2.21 16 7 C 0.13 3.05 2.05 44.17 0.09 3.14 16 8 H 0.04 1.06 6.91 -2.39 -0.02 1.05 16 9 C -0.11 -2.11 5.51 30.60 0.17 -1.94 16 10 C -0.16 -2.79 9.62 71.98 0.69 -2.09 16 11 N -0.67 -17.50 5.30 -473.18 -2.51 -20.01 16 12 C 0.11 3.79 2.24 44.94 0.10 3.90 16 13 C -0.15 -5.58 5.31 30.67 0.16 -5.42 16 14 C 0.19 9.21 5.31 86.36 0.46 9.67 16 15 N -0.61 -31.50 2.98 -699.08 -2.08 -33.58 16 16 C -0.26 -14.93 9.55 84.03 0.80 -14.13 16 17 H 0.07 3.58 7.90 -2.91 -0.02 3.56 16 18 C -0.05 -2.81 4.84 84.86 0.41 -2.40 16 19 N -0.93 -56.66 11.47 21.65 0.25 -56.41 16 20 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.14 6.15 6.51 86.36 0.56 6.72 16 25 C -0.10 -3.53 5.69 30.67 0.17 -3.36 16 26 C -0.13 -3.17 9.67 22.27 0.22 -2.96 16 27 C -0.13 -2.88 9.70 22.27 0.22 -2.67 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 32 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.13 2.34 8.06 -2.92 -0.02 2.32 16 34 H 0.13 3.00 7.72 -2.91 -0.02 2.98 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.03 6.60 -2.39 -0.02 1.01 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.35 8.51 6.26 -89.69 -0.56 7.95 16 41 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 43 H 0.06 2.00 7.37 -2.38 -0.02 1.99 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.04 2.53 6.26 -2.39 -0.01 2.52 16 46 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 47 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 48 H 0.05 2.33 7.94 -2.38 -0.02 2.31 16 49 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.12 2.71 8.04 -2.91 -0.02 2.69 16 52 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -63.90 402.44 3.17 -60.74 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.30 Total: 24.41 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 5.18 Total: -22.70 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -4.34 Total: -110.00 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -63.90 3.17 -60.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.055 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds