Wall clock time and date at job start Tue Mar 31 2020 10:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 C 1.50697 * 109.47302 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00068 * 89.99887 * 4 3 2 6 6 C 1.38237 * 120.00111 * 180.02562 * 5 4 3 7 7 C 1.38239 * 119.99733 * 359.95710 * 6 5 4 8 8 C 1.50699 * 119.99588 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47221 * 19.99524 * 8 7 6 10 10 C 1.53002 * 109.47160 * 259.99699 * 8 7 6 11 11 N 1.46897 * 109.47268 * 140.00108 * 8 7 6 12 12 C 1.46905 * 110.99763 * 273.67997 * 11 8 7 13 13 C 1.53045 * 109.45957 * 273.54803 * 12 11 8 14 14 C 1.53193 * 109.31154 * 178.60095 * 13 12 11 15 15 N 1.46925 * 108.76644 * 54.65707 * 14 13 12 16 16 C 1.36932 * 120.63225 * 126.36360 * 15 14 13 17 17 H 1.08001 * 119.99645 * 325.11879 * 16 15 14 18 18 C 1.38808 * 120.00606 * 145.12960 * 16 15 14 19 19 N 1.31630 * 119.99466 * 344.79378 * 18 16 15 20 20 Si 1.86800 * 120.00755 * 164.79996 * 18 16 15 21 21 H 1.48508 * 109.46468 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47350 * 119.99323 * 20 18 16 23 23 H 1.48493 * 109.46936 * 240.00024 * 20 18 16 24 24 C 1.46931 * 118.74007 * 306.38197 * 15 14 13 25 25 C 1.53045 * 109.46038 * 153.49598 * 12 11 8 26 26 C 1.38230 * 120.00194 * 0.27544 * 7 6 5 27 27 C 1.38235 * 120.00002 * 269.97694 * 4 3 2 28 28 H 1.09005 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47651 * 300.00056 * 1 2 3 30 30 H 1.09001 * 109.46637 * 60.00380 * 1 2 3 31 31 H 1.08990 * 109.47525 * 239.99406 * 2 1 3 32 32 H 1.09001 * 109.46637 * 119.99620 * 2 1 3 33 33 H 1.09005 * 109.46920 * 59.99391 * 3 2 1 34 34 H 1.08995 * 109.47405 * 299.99518 * 3 2 1 35 35 H 1.07995 * 120.00149 * 359.97438 * 5 4 3 36 36 H 1.07992 * 119.99915 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.46662 * 55.37890 * 10 8 7 38 38 H 1.08999 * 109.47636 * 175.38543 * 10 8 7 39 39 H 1.09004 * 109.47138 * 295.38598 * 10 8 7 40 40 H 1.00902 * 111.00470 * 37.63085 * 11 8 7 41 41 H 1.08995 * 109.46356 * 33.52055 * 12 11 8 42 42 H 1.09000 * 109.49579 * 298.56474 * 13 12 11 43 43 H 1.08996 * 109.49563 * 58.65955 * 13 12 11 44 44 H 1.09001 * 109.59545 * 294.86684 * 14 13 12 45 45 H 1.09003 * 109.70017 * 174.50433 * 14 13 12 46 46 H 0.96999 * 119.99507 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.58575 * 293.82337 * 24 15 14 48 48 H 1.08996 * 109.70196 * 173.46328 * 24 15 14 49 49 H 1.09000 * 109.49553 * 301.33306 * 25 12 11 50 50 H 1.08997 * 109.50229 * 61.43313 * 25 12 11 51 51 H 1.07999 * 120.00248 * 179.73592 * 26 7 6 52 52 H 1.08003 * 120.00530 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2387 1.4423 -1.1962 6 6 5.6211 1.4418 -1.1956 7 6 6.3117 1.4424 0.0019 8 6 7.8187 1.4424 0.0024 9 1 8.1824 1.7933 -0.9633 10 6 8.3286 0.0219 0.2539 11 7 8.3080 2.3331 1.0632 12 6 8.4006 3.7192 0.5855 13 6 9.7583 3.9373 -0.0864 14 6 9.8376 5.3733 -0.6140 15 7 9.5560 6.2993 0.4914 16 6 10.4302 7.3082 0.7963 17 1 11.4933 7.1536 0.6848 18 6 9.9502 8.5294 1.2490 19 7 8.6767 8.8298 1.1060 20 14 11.1114 9.7466 2.0610 21 1 12.4807 9.1732 2.1009 22 1 11.1264 11.0112 1.2828 23 1 10.6503 10.0226 3.4453 24 6 8.3187 6.1220 1.2637 25 6 8.2562 4.6775 1.7700 26 6 5.6200 1.4377 1.1987 27 6 4.2377 1.4432 1.1981 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.6991 1.4417 -2.1317 36 1 6.1614 1.4412 -2.1307 37 1 7.8995 -0.6543 -0.4855 38 1 9.4155 0.0064 0.1731 39 1 8.0340 -0.2983 1.2533 40 1 7.7249 2.2719 1.8844 41 1 7.6046 3.9092 -0.1344 42 1 10.5542 3.7718 0.6397 43 1 9.8704 3.2385 -0.9153 44 1 9.1007 5.5134 -1.4049 45 1 10.8361 5.5659 -1.0066 46 1 8.3413 9.6834 1.4220 47 1 7.4579 6.3232 0.6260 48 1 8.3134 6.8069 2.1115 49 1 7.2991 4.5056 2.2624 50 1 9.0665 4.5050 2.4784 51 1 6.1596 1.4338 2.1342 52 1 3.6973 1.4432 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:20 Heat of formation + Delta-G solvation = 19.053447 kcal Electronic energy + Delta-G solvation = -26714.501965 eV Core-core repulsion = 23291.960221 eV Total energy + Delta-G solvation = -3422.541744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.94418 -38.03048 -36.24920 -34.70928 -32.87333 -31.23215 -30.90370 -30.18890 -29.64473 -28.11527 -26.45618 -24.53266 -23.24836 -22.63115 -22.15620 -21.56078 -21.14945 -20.01534 -18.99496 -16.90151 -16.57082 -15.97173 -15.35174 -15.12778 -14.72757 -14.62386 -14.20217 -14.01475 -13.84442 -13.53709 -13.45797 -13.39498 -13.30589 -12.94030 -12.82925 -12.38017 -12.29684 -12.23048 -11.90458 -11.73635 -11.45155 -11.33112 -11.28329 -11.05408 -10.93275 -10.91296 -10.81860 -10.69652 -10.63046 -10.25735 -10.13914 -9.93574 -9.55047 -9.37467 -8.96297 -8.56970 -8.44198 -8.14361 -6.52428 -5.75612 -3.24199 1.27711 1.36474 3.38697 3.46532 3.49424 3.68089 4.38302 4.52535 4.52683 4.61364 4.74472 4.82272 4.85905 4.95689 5.16456 5.19168 5.33658 5.37636 5.40599 5.45142 5.49326 5.51571 5.54830 5.55376 5.61903 5.70223 5.73503 5.81814 5.84344 5.92872 5.97525 6.01868 6.03153 6.04724 6.20722 6.23124 6.38442 6.41123 6.44272 6.54784 6.58836 6.65494 6.71618 6.72494 6.90305 6.96368 7.11462 7.37050 7.42313 7.63235 7.68819 7.85927 8.53924 9.26382 9.88130 10.50068 11.32658 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.002764 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.612777 B =10126.893882 C =11129.618196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.080 4.080 4 C -0.089 4.089 5 C -0.115 4.115 6 C -0.111 4.111 7 C -0.107 4.107 8 C 0.121 3.879 9 H 0.084 0.916 10 C -0.131 4.131 11 N -0.679 5.679 12 C 0.097 3.903 13 C -0.116 4.116 14 C 0.145 3.855 15 N -0.590 5.590 16 C -0.254 4.254 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.179 3.821 25 C -0.141 4.141 26 C -0.113 4.113 27 C -0.113 4.113 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.336 0.664 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.013 0.987 45 H 0.054 0.946 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.076 0.924 49 H 0.043 0.957 50 H 0.062 0.938 51 H 0.121 0.879 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.111 -19.669 -2.254 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.118 4.118 4 C -0.089 4.089 5 C -0.133 4.133 6 C -0.129 4.129 7 C -0.109 4.109 8 C 0.010 3.990 9 H 0.102 0.898 10 C -0.189 4.189 11 N -0.310 5.310 12 C -0.011 4.011 13 C -0.156 4.156 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.384 4.384 17 H 0.080 0.920 18 C -0.192 4.192 19 N -0.544 5.544 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.053 3.947 25 C -0.180 4.180 26 C -0.132 4.132 27 C -0.131 4.131 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.156 0.844 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.504 -19.637 -2.318 22.876 hybrid contribution -0.533 1.005 0.391 1.203 sum -12.037 -18.632 -1.928 22.266 Atomic orbital electron populations 1.21795 0.95753 1.01621 1.01894 1.21502 0.95563 0.96176 1.02303 1.20624 0.91033 0.97229 1.02886 1.19843 0.95494 1.00307 0.93232 1.20991 0.94137 1.00797 0.97418 1.21037 0.94110 1.00196 0.97595 1.20774 0.97433 0.99315 0.93341 1.20629 0.87370 0.94379 0.96589 0.89833 1.21728 1.01448 0.94370 1.01350 1.60892 1.55401 1.08044 1.06691 1.21450 0.97176 0.85815 0.96700 1.22013 0.96597 0.97900 0.99078 1.20940 0.98418 0.88469 0.90377 1.43958 1.22738 1.32400 1.32156 1.19152 0.88573 0.90176 1.40538 0.92035 1.25228 0.96136 0.96592 1.01276 1.70047 1.13396 1.22543 1.48378 0.86261 0.80610 0.81108 0.79024 1.20134 1.21687 1.21556 1.20603 0.88076 0.90397 0.95634 1.22391 0.99789 0.98907 0.96945 1.20906 0.94123 1.00449 0.97676 1.20966 0.94034 1.00669 0.97448 0.92746 0.92671 0.92700 0.91949 0.91925 0.91077 0.91108 0.86377 0.86215 0.92856 0.91762 0.92732 0.84391 0.94485 0.91843 0.93670 0.96908 0.92755 0.93739 0.96500 0.90607 0.93834 0.91909 0.86155 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 3 C -0.08 -0.69 5.34 -27.89 -0.15 -0.83 16 4 C -0.09 -0.95 5.13 -104.63 -0.54 -1.49 16 5 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 6 C -0.11 -1.31 9.67 -39.58 -0.38 -1.70 16 7 C -0.11 -1.33 4.69 -104.62 -0.49 -1.82 16 8 C 0.12 1.52 2.64 -68.87 -0.18 1.34 16 9 H 0.08 1.12 7.08 -51.93 -0.37 0.75 16 10 C -0.13 -1.42 9.50 37.16 0.35 -1.07 16 11 N -0.68 -9.86 6.05 -100.91 -0.61 -10.47 16 12 C 0.10 1.71 2.25 -67.66 -0.15 1.55 16 13 C -0.12 -2.14 5.58 -26.61 -0.15 -2.29 16 14 C 0.14 3.17 6.52 -3.71 -0.02 3.15 16 15 N -0.59 -15.19 2.95 -172.31 -0.51 -15.70 16 16 C -0.25 -7.14 9.51 -15.06 -0.14 -7.28 16 17 H 0.06 1.71 7.87 -52.49 -0.41 1.30 16 18 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 19 N -0.90 -26.64 11.61 55.49 0.64 -26.00 16 20 Si 0.90 21.96 29.58 -169.99 -5.03 16.94 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.18 4.38 5.26 -3.70 -0.02 4.36 16 25 C -0.14 -2.75 5.35 -26.61 -0.14 -2.89 16 26 C -0.11 -1.35 9.10 -39.58 -0.36 -1.71 16 27 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.27 8.04 -52.49 -0.42 0.84 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.34 4.64 5.91 -39.29 -0.23 4.40 16 41 H 0.04 0.70 7.67 -51.93 -0.40 0.30 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.04 0.74 7.54 -51.93 -0.39 0.35 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 2.05 6.55 -51.93 -0.34 1.71 16 49 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 50 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.12 1.32 6.53 -52.49 -0.34 0.98 16 52 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 403.72 15.07 6.08 6.08 Total: -1.00 -29.94 403.72 -12.08 -42.02 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -9.63 Total: 2.64 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.02 Total: -15.51 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.48 Total: -52.17 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.94 -12.08 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.071 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds