Wall clock time and date at job start Tue Mar 31 2020 10:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 C 1.50697 * 109.47302 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00068 * 89.99887 * 4 3 2 6 6 C 1.38237 * 120.00111 * 180.02562 * 5 4 3 7 7 C 1.38239 * 119.99733 * 359.95710 * 6 5 4 8 8 C 1.50699 * 119.99588 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47221 * 19.99524 * 8 7 6 10 10 C 1.53002 * 109.47160 * 259.99699 * 8 7 6 11 11 N 1.46897 * 109.47268 * 140.00108 * 8 7 6 12 12 C 1.46905 * 110.99763 * 273.67997 * 11 8 7 13 13 C 1.53045 * 109.45957 * 273.54803 * 12 11 8 14 14 C 1.53193 * 109.31154 * 178.60095 * 13 12 11 15 15 N 1.46925 * 108.76644 * 54.65707 * 14 13 12 16 16 C 1.36932 * 120.63225 * 126.36360 * 15 14 13 17 17 H 1.08001 * 119.99645 * 325.11879 * 16 15 14 18 18 C 1.38808 * 120.00606 * 145.12960 * 16 15 14 19 19 N 1.31630 * 119.99466 * 344.79378 * 18 16 15 20 20 Si 1.86800 * 120.00755 * 164.79996 * 18 16 15 21 21 H 1.48508 * 109.46468 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47350 * 119.99323 * 20 18 16 23 23 H 1.48493 * 109.46936 * 240.00024 * 20 18 16 24 24 C 1.46931 * 118.74007 * 306.38197 * 15 14 13 25 25 C 1.53045 * 109.46038 * 153.49598 * 12 11 8 26 26 C 1.38230 * 120.00194 * 0.27544 * 7 6 5 27 27 C 1.38235 * 120.00002 * 269.97694 * 4 3 2 28 28 H 1.09005 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47651 * 300.00056 * 1 2 3 30 30 H 1.09001 * 109.46637 * 60.00380 * 1 2 3 31 31 H 1.08990 * 109.47525 * 239.99406 * 2 1 3 32 32 H 1.09001 * 109.46637 * 119.99620 * 2 1 3 33 33 H 1.09005 * 109.46920 * 59.99391 * 3 2 1 34 34 H 1.08995 * 109.47405 * 299.99518 * 3 2 1 35 35 H 1.07995 * 120.00149 * 359.97438 * 5 4 3 36 36 H 1.07992 * 119.99915 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.46662 * 55.37890 * 10 8 7 38 38 H 1.08999 * 109.47636 * 175.38543 * 10 8 7 39 39 H 1.09004 * 109.47138 * 295.38598 * 10 8 7 40 40 H 1.00902 * 111.00470 * 37.63085 * 11 8 7 41 41 H 1.08995 * 109.46356 * 33.52055 * 12 11 8 42 42 H 1.09000 * 109.49579 * 298.56474 * 13 12 11 43 43 H 1.08996 * 109.49563 * 58.65955 * 13 12 11 44 44 H 1.09001 * 109.59545 * 294.86684 * 14 13 12 45 45 H 1.09003 * 109.70017 * 174.50433 * 14 13 12 46 46 H 0.96999 * 119.99507 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.58575 * 293.82337 * 24 15 14 48 48 H 1.08996 * 109.70196 * 173.46328 * 24 15 14 49 49 H 1.09000 * 109.49553 * 301.33306 * 25 12 11 50 50 H 1.08997 * 109.50229 * 61.43313 * 25 12 11 51 51 H 1.07999 * 120.00248 * 179.73592 * 26 7 6 52 52 H 1.08003 * 120.00530 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2387 1.4423 -1.1962 6 6 5.6211 1.4418 -1.1956 7 6 6.3117 1.4424 0.0019 8 6 7.8187 1.4424 0.0024 9 1 8.1824 1.7933 -0.9633 10 6 8.3286 0.0219 0.2539 11 7 8.3080 2.3331 1.0632 12 6 8.4006 3.7192 0.5855 13 6 9.7583 3.9373 -0.0864 14 6 9.8376 5.3733 -0.6140 15 7 9.5560 6.2993 0.4914 16 6 10.4302 7.3082 0.7963 17 1 11.4933 7.1536 0.6848 18 6 9.9502 8.5294 1.2490 19 7 8.6767 8.8298 1.1060 20 14 11.1114 9.7466 2.0610 21 1 12.4807 9.1732 2.1009 22 1 11.1264 11.0112 1.2828 23 1 10.6503 10.0226 3.4453 24 6 8.3187 6.1220 1.2637 25 6 8.2562 4.6775 1.7700 26 6 5.6200 1.4377 1.1987 27 6 4.2377 1.4432 1.1981 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.6991 1.4417 -2.1317 36 1 6.1614 1.4412 -2.1307 37 1 7.8995 -0.6543 -0.4855 38 1 9.4155 0.0064 0.1731 39 1 8.0340 -0.2983 1.2533 40 1 7.7249 2.2719 1.8844 41 1 7.6046 3.9092 -0.1344 42 1 10.5542 3.7718 0.6397 43 1 9.8704 3.2385 -0.9153 44 1 9.1007 5.5134 -1.4049 45 1 10.8361 5.5659 -1.0066 46 1 8.3413 9.6834 1.4220 47 1 7.4579 6.3232 0.6260 48 1 8.3134 6.8069 2.1115 49 1 7.2991 4.5056 2.2624 50 1 9.0665 4.5050 2.4784 51 1 6.1596 1.4338 2.1342 52 1 3.6973 1.4432 2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:19 Heat of formation + Delta-G solvation = 4.933482 kcal Electronic energy + Delta-G solvation = -26715.114253 eV Core-core repulsion = 23291.960221 eV Total energy + Delta-G solvation = -3423.154032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87999 -39.46577 -37.48263 -35.71860 -34.45003 -32.73907 -31.85920 -31.60446 -30.93773 -29.54987 -27.18209 -26.44070 -24.26947 -23.69725 -23.59748 -22.96105 -22.05754 -20.96584 -20.71041 -18.71314 -17.71890 -17.02094 -16.72433 -16.19602 -16.08817 -15.67375 -15.51973 -15.34729 -15.12422 -14.81404 -14.68017 -14.53051 -14.29538 -14.24085 -13.91910 -13.90265 -13.35674 -13.06039 -13.04672 -12.91450 -12.77632 -12.71218 -12.62579 -12.44620 -12.17115 -12.10682 -12.01981 -11.94828 -11.83439 -11.76812 -11.59622 -11.49118 -11.24289 -11.10652 -10.58218 -9.83398 -9.49477 -9.30485 -8.61397 -7.89346 -5.42309 0.40961 0.49672 1.44912 1.46448 1.57898 2.49688 2.81615 3.15858 3.28906 3.68548 3.71468 3.85892 3.93405 4.02413 4.08860 4.12120 4.17249 4.25540 4.38116 4.44155 4.50679 4.53960 4.55967 4.59193 4.63543 4.69914 4.79628 4.80692 4.86638 4.87786 4.98510 5.00974 5.03689 5.07752 5.09272 5.13036 5.17474 5.25018 5.25982 5.29269 5.37241 5.38069 5.44585 5.47011 5.53071 5.61744 5.65184 5.70261 5.72965 6.11927 6.18889 6.41300 6.50513 7.14338 7.82718 8.39711 9.16767 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.002764 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.612777 B =10126.893882 C =11129.618196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.079 4.079 4 C -0.093 4.093 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.120 4.120 8 C 0.123 3.877 9 H 0.077 0.923 10 C -0.124 4.124 11 N -0.674 5.674 12 C 0.112 3.888 13 C -0.102 4.102 14 C 0.141 3.859 15 N -0.608 5.608 16 C -0.267 4.267 17 H 0.062 0.938 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.187 3.813 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.123 4.123 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.342 0.658 41 H 0.025 0.975 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.007 0.993 45 H 0.054 0.946 46 H 0.251 0.749 47 H -0.008 1.008 48 H 0.043 0.957 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.127 0.873 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 -21.300 -2.111 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.116 4.116 4 C -0.093 4.093 5 C -0.142 4.142 6 C -0.142 4.142 7 C -0.122 4.122 8 C 0.013 3.987 9 H 0.095 0.905 10 C -0.182 4.182 11 N -0.305 5.305 12 C 0.002 3.998 13 C -0.142 4.142 14 C 0.015 3.985 15 N -0.332 5.332 16 C -0.397 4.397 17 H 0.080 0.920 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.061 3.939 25 C -0.165 4.165 26 C -0.142 4.142 27 C -0.141 4.141 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.163 0.837 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.025 0.975 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.010 0.990 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.145 0.855 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.654 -21.307 -2.183 24.384 hybrid contribution -0.538 1.481 0.287 1.601 sum -12.192 -19.827 -1.897 23.352 Atomic orbital electron populations 1.21783 0.94817 1.02149 1.02156 1.21458 0.96325 0.95290 1.02062 1.20655 0.89610 0.98055 1.03273 1.20144 0.96715 0.99379 0.93050 1.21249 0.94089 1.00535 0.98340 1.21242 0.94701 1.00353 0.97882 1.20778 0.97217 1.00372 0.93817 1.20645 0.87761 0.94774 0.95493 0.90460 1.21668 1.01364 0.93244 1.01920 1.60836 1.56055 1.06151 1.07485 1.21147 0.96198 0.87195 0.95265 1.21821 0.96830 0.95821 0.99711 1.21071 0.98127 0.89850 0.89418 1.44231 1.22643 1.32750 1.33559 1.19461 0.89067 0.90931 1.40278 0.92049 1.26010 0.97658 0.98413 1.02094 1.70193 1.15175 1.22942 1.49573 0.85209 0.79039 0.78546 0.77659 1.18957 1.21680 1.21483 1.20393 0.86863 0.92770 0.93873 1.22150 1.00638 0.96113 0.97622 1.21063 0.94647 1.00696 0.97824 1.21219 0.94014 1.00495 0.98354 0.92115 0.92450 0.92417 0.92157 0.92204 0.90734 0.90682 0.84847 0.85392 0.91650 0.91798 0.92453 0.83694 0.95724 0.92525 0.91099 0.97538 0.92717 0.94049 0.99025 0.93870 0.91976 0.92325 0.85528 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.11 -1.51 5.92 30.59 0.18 -1.33 16 3 C -0.08 -1.22 5.34 29.85 0.16 -1.06 16 4 C -0.09 -1.86 5.13 -19.87 -0.10 -1.97 16 5 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 6 C -0.12 -2.77 9.67 22.27 0.22 -2.56 16 7 C -0.12 -2.82 4.69 -19.87 -0.09 -2.91 16 8 C 0.12 2.89 2.64 44.17 0.12 3.01 16 9 H 0.08 1.92 7.08 -2.39 -0.02 1.90 16 10 C -0.12 -2.42 9.50 71.98 0.68 -1.73 16 11 N -0.67 -18.37 6.05 -473.16 -2.86 -21.23 16 12 C 0.11 3.80 2.25 44.94 0.10 3.90 16 13 C -0.10 -3.65 5.58 30.67 0.17 -3.48 16 14 C 0.14 6.19 6.52 86.36 0.56 6.75 16 15 N -0.61 -31.85 2.95 -699.08 -2.06 -33.91 16 16 C -0.27 -15.17 9.51 84.03 0.80 -14.37 16 17 H 0.06 3.42 7.87 -2.91 -0.02 3.40 16 18 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 19 N -0.93 -56.70 11.61 21.65 0.25 -56.45 16 20 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 C 0.19 9.39 5.26 86.36 0.45 9.84 16 25 C -0.13 -4.87 5.35 30.68 0.16 -4.71 16 26 C -0.12 -2.79 9.10 22.27 0.20 -2.58 16 27 C -0.12 -2.57 9.70 22.27 0.22 -2.36 16 28 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.10 8.09 -2.38 -0.02 1.08 16 34 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.13 2.55 8.04 -2.91 -0.02 2.53 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.34 8.79 5.91 -89.69 -0.53 8.26 16 41 H 0.02 0.92 7.67 -2.39 -0.02 0.90 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.18 7.54 -2.39 -0.02 2.16 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 48 H 0.04 2.41 6.55 -2.39 -0.02 2.39 16 49 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 50 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 51 H 0.13 2.58 6.53 -2.91 -0.02 2.56 16 52 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -64.62 403.72 2.86 -61.76 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.33 Total: 23.22 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 5.18 Total: -21.06 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -4.68 Total: -111.60 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -64.62 2.86 -61.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.689 kcal (2) G-P(sol) polarization free energy of solvation -64.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds