Wall clock time and date at job start Tue Mar 31 2020 10:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46852 * 2 1 4 4 C 1.50698 * 109.46612 * 179.97438 * 3 2 1 5 5 C 1.38244 * 119.99649 * 90.00111 * 4 3 2 6 6 C 1.38236 * 119.99810 * 179.97438 * 5 4 3 7 7 C 1.38239 * 119.99868 * 359.96239 * 6 5 4 8 8 C 1.50697 * 119.99373 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.48003 * 339.99664 * 8 7 6 10 10 C 1.53002 * 109.46959 * 100.00109 * 8 7 6 11 11 N 1.46908 * 109.46711 * 219.99426 * 8 7 6 12 12 C 1.46907 * 110.99608 * 155.00225 * 11 8 7 13 13 C 1.53035 * 109.45776 * 275.02872 * 12 11 8 14 14 C 1.53201 * 109.30836 * 178.60246 * 13 12 11 15 15 N 1.46927 * 108.76382 * 54.65827 * 14 13 12 16 16 C 1.36933 * 120.63006 * 126.36083 * 15 14 13 17 17 H 1.08004 * 120.00213 * 207.69191 * 16 15 14 18 18 C 1.38812 * 119.99942 * 27.69692 * 16 15 14 19 19 N 1.31614 * 120.00316 * 17.35267 * 18 16 15 20 20 Si 1.86809 * 119.99936 * 197.34983 * 18 16 15 21 21 H 1.48497 * 109.46999 * 89.99895 * 20 18 16 22 22 H 1.48493 * 109.46869 * 210.00370 * 20 18 16 23 23 H 1.48507 * 109.46879 * 330.00223 * 20 18 16 24 24 C 1.46921 * 118.73868 * 306.37877 * 15 14 13 25 25 C 1.53045 * 109.45624 * 154.97401 * 12 11 8 26 26 C 1.38230 * 120.00109 * 0.26887 * 7 6 5 27 27 C 1.38230 * 120.00198 * 269.97589 * 4 3 2 28 28 H 1.09002 * 109.46970 * 299.99696 * 1 2 3 29 29 H 1.08994 * 109.47406 * 59.99866 * 1 2 3 30 30 H 1.09003 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46918 * 240.00211 * 2 1 3 32 32 H 1.08999 * 109.47094 * 119.99750 * 2 1 3 33 33 H 1.09001 * 109.46732 * 59.99968 * 3 2 1 34 34 H 1.09002 * 109.46630 * 300.00017 * 3 2 1 35 35 H 1.08003 * 120.00252 * 359.97438 * 5 4 3 36 36 H 1.07999 * 119.99885 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47150 * 59.99803 * 10 8 7 38 38 H 1.09007 * 109.47147 * 179.97438 * 10 8 7 39 39 H 1.08995 * 109.47279 * 299.99472 * 10 8 7 40 40 H 1.00892 * 110.99809 * 31.04999 * 11 8 7 41 41 H 1.08996 * 109.45742 * 35.00503 * 12 11 8 42 42 H 1.08997 * 109.50095 * 298.56525 * 13 12 11 43 43 H 1.08998 * 109.50058 * 58.66656 * 13 12 11 44 44 H 1.08989 * 109.59765 * 294.86626 * 14 13 12 45 45 H 1.08999 * 109.58240 * 174.43488 * 14 13 12 46 46 H 0.97001 * 120.00586 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.58908 * 293.82833 * 24 15 14 48 48 H 1.08993 * 109.70744 * 173.46463 * 24 15 14 49 49 H 1.08993 * 109.49674 * 301.33944 * 25 12 11 50 50 H 1.08993 * 109.49432 * 61.40345 * 25 12 11 51 51 H 1.07998 * 120.00320 * 179.73048 * 26 7 6 52 52 H 1.07999 * 120.00078 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2386 1.4424 -1.1963 6 6 5.6210 1.4428 -1.1958 7 6 6.3117 1.4443 0.0017 8 6 7.8186 1.4442 0.0021 9 1 8.1824 1.0915 -0.9629 10 6 8.3286 2.8651 0.2511 11 7 8.3079 0.5553 1.0645 12 6 9.6554 0.0581 0.7559 13 6 9.5498 -1.1778 -0.1404 14 6 10.9573 -1.6727 -0.4886 15 7 11.7025 -1.8936 0.7582 16 6 12.3049 -3.0979 1.0069 17 1 12.4518 -3.4283 2.0246 18 6 12.7269 -3.8941 -0.0490 19 7 12.8688 -3.3739 -1.2497 20 14 13.0934 -5.7038 0.2341 21 1 11.8587 -6.4991 0.0151 22 1 14.1448 -6.1502 -0.7148 23 1 13.5682 -5.9006 1.6274 24 6 11.7889 -0.7979 1.7331 25 6 10.3722 -0.3126 2.0563 26 6 5.6201 1.4396 1.1985 27 6 4.2377 1.4432 1.1980 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.6990 1.4418 -2.1319 36 1 6.1613 1.4423 -2.1309 37 1 7.9650 3.2178 1.2162 38 1 9.4187 2.8650 0.2519 39 1 7.9656 3.5247 -0.5371 40 1 7.6675 -0.2086 1.2202 41 1 10.2193 0.8345 0.2390 42 1 9.0075 -1.9635 0.3856 43 1 9.0185 -0.9189 -1.0562 44 1 11.4691 -0.9236 -1.0926 45 1 10.8886 -2.6081 -1.0439 46 1 13.1640 -3.9302 -1.9875 47 1 12.3686 0.0226 1.3104 48 1 12.2698 -1.1537 2.6442 49 1 10.4262 0.5623 2.7040 50 1 9.8218 -1.1060 2.5616 51 1 6.1596 1.4364 2.1340 52 1 3.6973 1.4433 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:22 Heat of formation + Delta-G solvation = 19.317542 kcal Electronic energy + Delta-G solvation = -26427.426088 eV Core-core repulsion = 23004.895796 eV Total energy + Delta-G solvation = -3422.530292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.86351 -38.14437 -36.22618 -34.79137 -32.88438 -31.23995 -30.95431 -29.98314 -29.67066 -28.13491 -26.52386 -24.62965 -23.05787 -22.71954 -22.07882 -21.63995 -21.00853 -20.05639 -19.20197 -16.99378 -16.33267 -16.04774 -15.39461 -15.08858 -14.80378 -14.47530 -14.18314 -14.00118 -13.89493 -13.63923 -13.47359 -13.40938 -13.07845 -12.92634 -12.66898 -12.57769 -12.34407 -12.29083 -11.82396 -11.70223 -11.47081 -11.33971 -11.31829 -11.17950 -10.99243 -10.85113 -10.77206 -10.70726 -10.47343 -10.36830 -10.12769 -9.98584 -9.64722 -9.49538 -8.95748 -8.57327 -8.47488 -8.02282 -6.64661 -5.76508 -3.18239 1.25450 1.36723 3.39053 3.45878 3.47121 3.66948 4.36819 4.51038 4.51812 4.61621 4.75665 4.81864 4.88440 4.98402 5.17008 5.18996 5.33765 5.39960 5.40939 5.44871 5.48364 5.50911 5.52875 5.58971 5.61794 5.70474 5.74642 5.79599 5.86337 5.90540 5.98333 6.00333 6.04921 6.06205 6.18969 6.30439 6.36497 6.37143 6.46164 6.53921 6.58897 6.61901 6.70776 6.72186 6.86667 6.96160 7.04594 7.36755 7.43337 7.63862 7.71667 7.82005 8.47657 9.23954 9.87962 10.44766 11.31960 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.002572 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.596498 B =10885.714986 C =11782.736601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.079 4.079 4 C -0.088 4.088 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.086 4.086 8 C 0.122 3.878 9 H 0.052 0.948 10 C -0.132 4.132 11 N -0.681 5.681 12 C 0.095 3.905 13 C -0.166 4.166 14 C 0.175 3.825 15 N -0.592 5.592 16 C -0.249 4.249 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.145 3.855 25 C -0.116 4.116 26 C -0.097 4.097 27 C -0.120 4.120 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.339 0.661 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.016 0.984 45 H 0.086 0.914 46 H 0.253 0.747 47 H 0.016 0.984 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.131 0.869 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.962 12.072 1.723 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.116 4.116 4 C -0.089 4.089 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.087 4.087 8 C 0.012 3.988 9 H 0.070 0.930 10 C -0.190 4.190 11 N -0.312 5.312 12 C -0.014 4.014 13 C -0.207 4.207 14 C 0.049 3.951 15 N -0.315 5.315 16 C -0.379 4.379 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.018 3.982 25 C -0.156 4.156 26 C -0.116 4.116 27 C -0.138 4.138 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.157 0.843 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.149 0.851 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.650 12.510 1.983 24.225 hybrid contribution 0.009 -1.629 -0.777 1.805 sum -20.641 10.881 1.206 23.365 Atomic orbital electron populations 1.21792 0.95780 1.01715 1.01727 1.21519 0.95529 0.96142 1.02544 1.20617 0.91092 0.97306 1.02617 1.19863 0.95442 1.00245 0.93302 1.20945 0.94003 1.01402 0.97394 1.21052 0.94155 1.00196 0.97634 1.20019 0.95374 0.99993 0.93266 1.20416 0.89212 0.94808 0.94365 0.93041 1.21765 1.01158 0.94533 1.01559 1.60877 1.04415 1.22932 1.42954 1.21541 0.88293 0.95365 0.96195 1.22846 1.01820 0.97739 0.98303 1.20689 0.86064 1.00214 0.88169 1.44062 1.59096 1.10195 1.18171 1.19212 1.32408 0.93910 0.92388 0.91669 1.25036 0.99291 0.99079 0.96423 1.70034 1.49974 1.34275 1.00600 0.86294 0.77556 0.85548 0.77422 1.21520 1.21800 1.20419 1.20921 0.92929 0.90855 0.93507 1.21968 0.97954 0.99754 0.95930 1.21076 0.93642 0.98544 0.98296 1.21029 0.94261 1.01229 0.97316 0.92745 0.92778 0.92673 0.91847 0.91786 0.91199 0.91255 0.86434 0.86264 0.92114 0.92280 0.92970 0.84283 0.91277 0.92662 0.93877 0.96604 0.89585 0.93705 0.96634 0.92762 0.92637 0.92580 0.85137 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.89 5.92 -26.72 -0.16 -1.05 16 3 C -0.08 -0.60 5.35 -27.88 -0.15 -0.75 16 4 C -0.09 -0.87 5.13 -104.62 -0.54 -1.41 16 5 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 6 C -0.11 -1.27 9.67 -39.58 -0.38 -1.65 16 7 C -0.09 -1.03 4.72 -104.63 -0.49 -1.53 16 8 C 0.12 1.57 2.63 -68.86 -0.18 1.39 16 9 H 0.05 0.72 6.97 -51.93 -0.36 0.36 16 10 C -0.13 -1.59 9.38 37.16 0.35 -1.24 16 11 N -0.68 -9.71 5.44 -100.90 -0.55 -10.26 16 12 C 0.10 1.61 2.24 -67.67 -0.15 1.46 16 13 C -0.17 -3.21 5.31 -26.61 -0.14 -3.35 16 14 C 0.18 4.23 5.31 -3.71 -0.02 4.21 16 15 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 16 C -0.25 -6.93 9.59 -15.06 -0.14 -7.08 16 17 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 18 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 19 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 20 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.14 3.08 6.51 -3.71 -0.02 3.06 16 25 C -0.12 -2.08 5.69 -26.61 -0.15 -2.23 16 26 C -0.10 -1.11 9.00 -39.58 -0.36 -1.47 16 27 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.74 7.43 -51.93 -0.39 0.36 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.34 4.89 7.73 -39.30 -0.30 4.59 16 41 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.77 7.41 -51.93 -0.38 0.39 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.13 1.47 7.71 -52.49 -0.40 1.07 16 52 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -29.08 403.74 -12.08 -41.16 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.66 Total: 3.06 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -3.03 Total: -15.51 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.44 Total: -51.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.08 -12.08 -41.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.481 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds