Wall clock time and date at job start Tue Mar 31 2020 10:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46852 * 2 1 4 4 C 1.50698 * 109.46612 * 179.97438 * 3 2 1 5 5 C 1.38244 * 119.99649 * 90.00111 * 4 3 2 6 6 C 1.38236 * 119.99810 * 179.97438 * 5 4 3 7 7 C 1.38239 * 119.99868 * 359.96239 * 6 5 4 8 8 C 1.50697 * 119.99373 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.48003 * 339.99664 * 8 7 6 10 10 C 1.53002 * 109.46959 * 100.00109 * 8 7 6 11 11 N 1.46908 * 109.46711 * 219.99426 * 8 7 6 12 12 C 1.46907 * 110.99608 * 155.00225 * 11 8 7 13 13 C 1.53035 * 109.45776 * 275.02872 * 12 11 8 14 14 C 1.53201 * 109.30836 * 178.60246 * 13 12 11 15 15 N 1.46927 * 108.76382 * 54.65827 * 14 13 12 16 16 C 1.36933 * 120.63006 * 126.36083 * 15 14 13 17 17 H 1.08004 * 120.00213 * 207.69191 * 16 15 14 18 18 C 1.38812 * 119.99942 * 27.69692 * 16 15 14 19 19 N 1.31614 * 120.00316 * 17.35267 * 18 16 15 20 20 Si 1.86809 * 119.99936 * 197.34983 * 18 16 15 21 21 H 1.48497 * 109.46999 * 89.99895 * 20 18 16 22 22 H 1.48493 * 109.46869 * 210.00370 * 20 18 16 23 23 H 1.48507 * 109.46879 * 330.00223 * 20 18 16 24 24 C 1.46921 * 118.73868 * 306.37877 * 15 14 13 25 25 C 1.53045 * 109.45624 * 154.97401 * 12 11 8 26 26 C 1.38230 * 120.00109 * 0.26887 * 7 6 5 27 27 C 1.38230 * 120.00198 * 269.97589 * 4 3 2 28 28 H 1.09002 * 109.46970 * 299.99696 * 1 2 3 29 29 H 1.08994 * 109.47406 * 59.99866 * 1 2 3 30 30 H 1.09003 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46918 * 240.00211 * 2 1 3 32 32 H 1.08999 * 109.47094 * 119.99750 * 2 1 3 33 33 H 1.09001 * 109.46732 * 59.99968 * 3 2 1 34 34 H 1.09002 * 109.46630 * 300.00017 * 3 2 1 35 35 H 1.08003 * 120.00252 * 359.97438 * 5 4 3 36 36 H 1.07999 * 119.99885 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47150 * 59.99803 * 10 8 7 38 38 H 1.09007 * 109.47147 * 179.97438 * 10 8 7 39 39 H 1.08995 * 109.47279 * 299.99472 * 10 8 7 40 40 H 1.00892 * 110.99809 * 31.04999 * 11 8 7 41 41 H 1.08996 * 109.45742 * 35.00503 * 12 11 8 42 42 H 1.08997 * 109.50095 * 298.56525 * 13 12 11 43 43 H 1.08998 * 109.50058 * 58.66656 * 13 12 11 44 44 H 1.08989 * 109.59765 * 294.86626 * 14 13 12 45 45 H 1.08999 * 109.58240 * 174.43488 * 14 13 12 46 46 H 0.97001 * 120.00586 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.58908 * 293.82833 * 24 15 14 48 48 H 1.08993 * 109.70744 * 173.46463 * 24 15 14 49 49 H 1.08993 * 109.49674 * 301.33944 * 25 12 11 50 50 H 1.08993 * 109.49432 * 61.40345 * 25 12 11 51 51 H 1.07998 * 120.00320 * 179.73048 * 26 7 6 52 52 H 1.07999 * 120.00078 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2386 1.4424 -1.1963 6 6 5.6210 1.4428 -1.1958 7 6 6.3117 1.4443 0.0017 8 6 7.8186 1.4442 0.0021 9 1 8.1824 1.0915 -0.9629 10 6 8.3286 2.8651 0.2511 11 7 8.3079 0.5553 1.0645 12 6 9.6554 0.0581 0.7559 13 6 9.5498 -1.1778 -0.1404 14 6 10.9573 -1.6727 -0.4886 15 7 11.7025 -1.8936 0.7582 16 6 12.3049 -3.0979 1.0069 17 1 12.4518 -3.4283 2.0246 18 6 12.7269 -3.8941 -0.0490 19 7 12.8688 -3.3739 -1.2497 20 14 13.0934 -5.7038 0.2341 21 1 11.8587 -6.4991 0.0151 22 1 14.1448 -6.1502 -0.7148 23 1 13.5682 -5.9006 1.6274 24 6 11.7889 -0.7979 1.7331 25 6 10.3722 -0.3126 2.0563 26 6 5.6201 1.4396 1.1985 27 6 4.2377 1.4432 1.1980 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.6990 1.4418 -2.1319 36 1 6.1613 1.4423 -2.1309 37 1 7.9650 3.2178 1.2162 38 1 9.4187 2.8650 0.2519 39 1 7.9656 3.5247 -0.5371 40 1 7.6675 -0.2086 1.2202 41 1 10.2193 0.8345 0.2390 42 1 9.0075 -1.9635 0.3856 43 1 9.0185 -0.9189 -1.0562 44 1 11.4691 -0.9236 -1.0926 45 1 10.8886 -2.6081 -1.0439 46 1 13.1640 -3.9302 -1.9875 47 1 12.3686 0.0226 1.3104 48 1 12.2698 -1.1537 2.6442 49 1 10.4262 0.5623 2.7040 50 1 9.8218 -1.1060 2.5616 51 1 6.1596 1.4364 2.1340 52 1 3.6973 1.4433 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:22 Heat of formation + Delta-G solvation = 6.121535 kcal Electronic energy + Delta-G solvation = -26427.998310 eV Core-core repulsion = 23004.895796 eV Total energy + Delta-G solvation = -3423.102514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.75919 -39.56868 -37.44077 -35.80004 -34.42363 -32.71177 -31.80575 -31.51732 -30.90534 -29.53483 -27.27786 -26.44837 -24.07793 -23.73712 -23.63639 -22.83053 -21.96329 -21.05652 -20.77879 -18.83449 -17.44805 -17.00975 -16.76024 -16.27248 -15.91383 -15.74443 -15.34100 -15.31388 -15.08927 -14.86222 -14.77167 -14.49776 -14.24503 -14.19081 -14.00728 -13.65756 -13.44620 -13.18273 -13.02615 -12.86915 -12.76551 -12.63917 -12.56424 -12.47388 -12.17681 -12.11674 -11.98619 -11.93721 -11.87075 -11.76372 -11.50669 -11.47281 -11.37170 -11.15124 -10.57514 -9.77396 -9.39441 -9.32296 -8.69736 -7.88634 -5.33806 0.43065 0.55047 1.45145 1.46555 1.55561 2.49983 2.84375 3.16280 3.28382 3.68384 3.72151 3.91981 3.96146 4.01042 4.13737 4.18282 4.21633 4.28474 4.37831 4.40636 4.50488 4.55833 4.57561 4.62804 4.66142 4.69459 4.76459 4.84470 4.87684 4.89521 4.96670 4.97962 5.02278 5.11023 5.13343 5.21479 5.22210 5.24532 5.29578 5.31378 5.37021 5.37960 5.46361 5.49014 5.55434 5.62439 5.68691 5.72861 5.77641 6.14341 6.19599 6.37781 6.48299 7.13301 7.85127 8.36908 9.17586 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.002572 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.596498 B =10885.714986 C =11782.736601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.076 4.076 4 C -0.089 4.089 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.099 4.099 8 C 0.124 3.876 9 H 0.040 0.960 10 C -0.127 4.127 11 N -0.669 5.669 12 C 0.108 3.892 13 C -0.150 4.150 14 C 0.182 3.818 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.067 0.933 18 C -0.054 4.054 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.140 3.860 25 C -0.102 4.102 26 C -0.105 4.105 27 C -0.125 4.125 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.340 0.660 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.055 0.945 44 H -0.006 1.006 45 H 0.050 0.950 46 H 0.249 0.751 47 H 0.013 0.987 48 H 0.055 0.945 49 H 0.080 0.920 50 H 0.051 0.949 51 H 0.130 0.870 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.032 12.732 2.734 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.113 4.113 4 C -0.089 4.089 5 C -0.143 4.143 6 C -0.142 4.142 7 C -0.099 4.099 8 C 0.014 3.986 9 H 0.058 0.942 10 C -0.185 4.185 11 N -0.299 5.299 12 C -0.002 4.002 13 C -0.190 4.190 14 C 0.056 3.944 15 N -0.334 5.334 16 C -0.391 4.391 17 H 0.085 0.915 18 C -0.249 4.249 19 N -0.583 5.583 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.192 1.192 24 C 0.014 3.986 25 C -0.142 4.142 26 C -0.123 4.123 27 C -0.143 4.143 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.012 0.988 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.031 0.969 48 H 0.074 0.926 49 H 0.098 0.902 50 H 0.070 0.930 51 H 0.148 0.852 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.739 13.194 3.022 26.463 hybrid contribution 0.621 -1.779 -1.096 2.180 sum -22.118 11.415 1.926 24.964 Atomic orbital electron populations 1.21775 0.94721 1.01996 1.02324 1.21491 0.96443 0.95849 1.01817 1.20643 0.89503 0.97556 1.03596 1.20157 0.96717 0.99060 0.92982 1.21190 0.93734 1.00938 0.98427 1.21200 0.94852 1.00509 0.97636 1.19939 0.94610 1.01460 0.93911 1.20413 0.90171 0.94820 0.93164 0.94206 1.21722 1.00562 0.94106 1.02141 1.60843 1.03075 1.22686 1.43301 1.21303 0.89852 0.93943 0.95096 1.22635 0.98418 0.98596 0.99390 1.20475 0.88496 0.97923 0.87539 1.44329 1.59355 1.10756 1.18960 1.19538 1.31954 0.95095 0.92523 0.91538 1.25811 0.99783 1.03020 0.96257 1.70189 1.51279 1.35492 1.01305 0.85265 0.77091 0.80511 0.77607 1.21301 1.22118 1.19190 1.21080 0.95300 0.89653 0.92519 1.21787 0.95461 1.00397 0.96551 1.21128 0.94264 0.98919 0.97979 1.21263 0.93976 1.00739 0.98327 0.92132 0.92206 0.92599 0.92633 0.92496 0.90209 0.90313 0.84831 0.85877 0.91854 0.93073 0.91839 0.84120 0.91711 0.93253 0.92673 0.98775 0.93107 0.94156 0.96891 0.92623 0.90190 0.92969 0.85211 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 3 C -0.08 -0.97 5.35 29.85 0.16 -0.81 16 4 C -0.09 -1.57 5.13 -19.87 -0.10 -1.67 16 5 C -0.12 -2.35 9.70 22.27 0.22 -2.13 16 6 C -0.12 -2.64 9.67 22.27 0.22 -2.43 16 7 C -0.10 -2.25 4.72 -19.87 -0.09 -2.34 16 8 C 0.12 3.06 2.63 44.17 0.12 3.17 16 9 H 0.04 1.09 6.97 -2.39 -0.02 1.07 16 10 C -0.13 -2.88 9.38 71.98 0.68 -2.20 16 11 N -0.67 -18.10 5.44 -473.15 -2.57 -20.67 16 12 C 0.11 3.56 2.24 44.94 0.10 3.66 16 13 C -0.15 -5.77 5.31 30.67 0.16 -5.61 16 14 C 0.18 9.05 5.31 86.37 0.46 9.51 16 15 N -0.61 -31.42 2.99 -699.11 -2.09 -33.51 16 16 C -0.26 -14.67 9.59 84.03 0.81 -13.86 16 17 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 18 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 19 N -0.94 -56.56 11.19 21.65 0.24 -56.31 16 20 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C 0.14 5.94 6.51 86.36 0.56 6.50 16 25 C -0.10 -3.51 5.69 30.67 0.17 -3.34 16 26 C -0.10 -2.22 9.00 22.27 0.20 -2.02 16 27 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 34 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.12 2.44 8.04 -2.91 -0.02 2.42 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.22 7.43 -2.38 -0.02 1.21 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.34 9.30 7.73 -89.70 -0.69 8.61 16 41 H 0.06 2.24 7.11 -2.39 -0.02 2.22 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.98 7.41 -2.39 -0.02 1.96 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.05 2.87 6.04 -2.39 -0.01 2.85 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 2.30 7.94 -2.39 -0.02 2.28 16 49 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.13 2.72 7.71 -2.91 -0.02 2.70 16 52 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -62.84 403.74 2.95 -59.89 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.17 Total: 23.43 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 5.18 Total: -20.53 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.42 Total: -110.50 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -62.84 2.95 -59.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.007 kcal (2) G-P(sol) polarization free energy of solvation -62.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds