Wall clock time and date at job start Tue Mar 31 2020 11:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.52995 * 109.47399 * 240.00114 * 2 1 3 5 5 C 1.50702 * 109.47184 * 294.99791 * 4 2 1 6 6 C 1.38229 * 120.00246 * 269.73221 * 5 4 2 7 7 C 1.38234 * 120.00324 * 179.76201 * 6 5 4 8 8 C 1.38242 * 119.99763 * 0.50507 * 7 6 5 9 9 C 1.50699 * 120.00173 * 179.72437 * 8 7 6 10 10 N 1.46894 * 109.47367 * 270.02114 * 9 8 7 11 11 C 1.46957 * 111.00066 * 293.80244 * 10 9 8 12 12 C 1.53049 * 109.36646 * 176.81073 * 11 10 9 13 13 N 1.46956 * 109.36606 * 58.39973 * 12 11 10 14 14 C 1.46898 * 111.00253 * 176.81616 * 13 12 11 15 15 C 1.50700 * 109.47395 * 58.97351 * 14 13 12 16 16 H 1.08003 * 120.00006 * 5.00814 * 15 14 13 17 17 C 1.37878 * 120.00109 * 185.01699 * 15 14 13 18 18 N 1.31520 * 119.99818 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99842 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47264 * 60.00035 * 19 17 15 21 21 H 1.48504 * 109.46676 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47468 * 299.99310 * 19 17 15 23 23 C 1.46962 * 110.87909 * 300.67917 * 13 12 11 24 24 C 1.46956 * 111.00423 * 169.99721 * 10 9 8 25 25 C 1.38236 * 119.99707 * 359.74237 * 8 7 6 26 26 C 1.38234 * 119.99742 * 89.99419 * 5 4 2 27 27 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46846 * 300.00465 * 1 2 3 29 29 H 1.09003 * 109.47026 * 59.99992 * 1 2 3 30 30 H 1.09000 * 109.47165 * 119.99510 * 2 1 3 31 31 H 1.09000 * 109.46965 * 59.99582 * 3 2 1 32 32 H 1.08995 * 109.47581 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47131 * 299.99943 * 3 2 1 34 34 H 1.08998 * 109.47785 * 54.99635 * 4 2 1 35 35 H 1.09003 * 109.47527 * 175.00388 * 4 2 1 36 36 H 1.08004 * 120.00294 * 359.97438 * 6 5 4 37 37 H 1.07998 * 120.00622 * 180.23015 * 7 6 5 38 38 H 1.09007 * 109.46714 * 30.02307 * 9 8 7 39 39 H 1.08999 * 109.47051 * 150.01560 * 9 8 7 40 40 H 1.09007 * 109.48528 * 296.77485 * 11 10 9 41 41 H 1.09001 * 109.48973 * 56.83859 * 11 10 9 42 42 H 1.09004 * 109.48855 * 298.43184 * 12 11 10 43 43 H 1.08998 * 109.48851 * 178.36900 * 12 11 10 44 44 H 1.08993 * 109.47436 * 178.97642 * 14 13 12 45 45 H 1.09005 * 109.46980 * 298.97675 * 14 13 12 46 46 H 0.96998 * 119.99788 * 180.02562 * 18 17 15 47 47 H 1.09007 * 109.48837 * 299.35510 * 23 13 12 48 48 H 1.08991 * 109.48963 * 179.28947 * 23 13 12 49 49 H 1.08997 * 109.48723 * 303.15899 * 24 10 9 50 50 H 1.09004 * 109.48502 * 63.22165 * 24 10 9 51 51 H 1.08001 * 119.99641 * 179.97438 * 25 8 7 52 52 H 1.07998 * 120.00380 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4840 -3.0974 -0.6000 7 6 2.1162 -4.4286 -0.5403 8 6 0.9104 -4.8373 -1.0788 9 6 0.5121 -6.2895 -1.0193 10 7 1.0022 -6.9813 -2.2189 11 6 0.3258 -6.4858 -3.4258 12 6 0.9191 -7.1725 -4.6582 13 7 0.7602 -8.6278 -4.5289 14 6 1.2504 -9.3195 -5.7285 15 6 2.7053 -8.9886 -5.9401 16 1 3.2362 -8.3964 -5.2094 17 6 3.3586 -9.4415 -7.0667 18 7 2.7121 -10.1629 -7.9563 19 14 5.1622 -9.0319 -7.3285 20 1 5.9627 -9.5806 -6.2046 21 1 5.6258 -9.6323 -8.6052 22 1 5.3320 -7.5576 -7.3839 23 6 1.4367 -9.1233 -3.3220 24 6 0.8434 -8.4365 -2.0896 25 6 0.0701 -3.9139 -1.6723 26 6 0.4356 -2.5819 -1.7273 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6055 -0.2618 -2.1370 35 1 3.1264 -0.6443 -1.2951 36 1 3.4282 -2.7790 -0.1834 37 1 2.7728 -5.1501 -0.0768 38 1 0.9468 -6.7493 -0.1316 39 1 -0.5742 -6.3668 -0.9735 40 1 -0.7394 -6.7083 -3.3630 41 1 0.4684 -5.4081 -3.5061 42 1 1.9784 -6.9279 -4.7362 43 1 0.3992 -6.8280 -5.5521 44 1 1.1378 -10.3958 -5.5988 45 1 0.6744 -8.9958 -6.5955 46 1 3.1718 -10.4819 -8.7486 47 1 2.5019 -8.9007 -3.3848 48 1 1.2941 -10.2009 -3.2417 49 1 1.3633 -8.7810 -1.1957 50 1 -0.2159 -8.6812 -2.0116 51 1 -0.8718 -4.2333 -2.0934 52 1 -0.2206 -1.8607 -2.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:20 Heat of formation + Delta-G solvation = 13.050389 kcal Electronic energy + Delta-G solvation = -26521.665776 eV Core-core repulsion = 23098.863720 eV Total energy + Delta-G solvation = -3422.802056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.88588 -38.52347 -36.61811 -35.03379 -32.59322 -31.63935 -31.00011 -30.21162 -28.67151 -27.44158 -26.79471 -25.13832 -23.43647 -23.04839 -22.49150 -21.48894 -20.78978 -20.13630 -19.02712 -16.38940 -16.35720 -15.76583 -15.64286 -15.29300 -14.88876 -14.65700 -14.51428 -14.29166 -14.12711 -13.99134 -13.52936 -13.41461 -13.34108 -13.00988 -12.55255 -12.44520 -12.34874 -12.13573 -11.83920 -11.77282 -11.70946 -11.58208 -11.13693 -11.03359 -10.99797 -10.89342 -10.83140 -10.77690 -10.59207 -10.42841 -10.27890 -10.00014 -9.81187 -9.49843 -8.85846 -8.54297 -8.39570 -8.00303 -7.13001 -5.99161 -4.07879 1.32072 1.43759 3.31865 3.36118 3.39583 3.66739 4.36544 4.44136 4.52249 4.57599 4.69195 4.81733 4.88948 5.01636 5.06068 5.10543 5.18354 5.31142 5.33042 5.37618 5.40418 5.47280 5.51042 5.55298 5.56987 5.63929 5.66012 5.68310 5.75330 5.80939 5.90568 5.96565 6.00606 6.01929 6.04088 6.08598 6.11338 6.19967 6.34642 6.43520 6.60601 6.65504 6.67615 6.81766 6.92353 7.02022 7.25221 7.34890 7.44763 7.55696 7.93670 8.09639 8.32649 8.33858 9.02671 9.58732 11.05843 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.002710 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.602738 B =10327.892222 C =11279.004174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.096 4.096 8 C -0.074 4.074 9 C 0.093 3.907 10 N -0.531 5.531 11 C 0.057 3.943 12 C 0.066 3.934 13 N -0.544 5.544 14 C 0.187 3.813 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.064 3.936 24 C 0.060 3.940 25 C -0.111 4.111 26 C -0.117 4.117 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.034 0.966 46 H 0.262 0.738 47 H 0.047 0.953 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.034 0.966 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 18.199 17.702 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.113 4.113 5 C -0.084 4.084 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.074 4.074 9 C -0.035 4.035 10 N -0.256 5.256 11 C -0.071 4.071 12 C -0.063 4.063 13 N -0.268 5.268 14 C 0.061 3.939 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.065 4.065 24 C -0.068 4.068 25 C -0.129 4.129 26 C -0.135 4.135 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.052 0.948 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.719 18.073 17.512 25.604 hybrid contribution 1.116 0.109 -0.365 1.179 sum -3.603 18.182 17.147 25.250 Atomic orbital electron populations 1.21921 0.95185 1.02285 1.01384 1.21076 0.96132 0.95705 0.98001 1.21858 1.00945 0.95978 1.01743 1.20673 1.01067 0.91362 0.98249 1.19783 0.94744 0.95270 0.98574 1.20977 0.99374 0.93079 1.00336 1.20980 0.95679 0.95530 0.99241 1.19747 0.94775 0.94843 0.98046 1.21019 0.97616 0.90674 0.94184 1.62149 1.57216 1.04514 1.01706 1.22311 0.95570 0.99063 0.90138 1.21901 1.00086 0.89225 0.95066 1.62694 1.56045 1.03731 1.04370 1.19726 0.93481 0.93955 0.86697 1.21734 0.96944 1.33731 1.06195 0.92376 1.24965 0.98048 0.94933 0.95886 1.69940 1.36529 1.35788 1.10881 0.86703 0.85524 0.78709 0.77374 1.20272 1.21267 1.20247 1.21926 0.97481 0.97946 0.89174 1.22229 0.99037 0.86710 0.98824 1.21044 0.99699 0.93023 0.99177 1.20946 0.96430 0.95649 1.00460 0.92000 0.93035 0.92808 0.91186 0.92741 0.92703 0.92660 0.91100 0.91123 0.86469 0.86145 0.90351 0.94368 0.95032 0.90964 0.93294 0.91500 0.95522 0.94821 0.92821 0.93483 0.91419 0.91332 0.94790 0.86424 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.76 37.16 0.33 -0.77 16 2 C -0.09 -0.67 2.91 -90.62 -0.26 -0.93 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 4 C -0.08 -0.63 4.84 -27.88 -0.14 -0.77 16 5 C -0.08 -0.87 4.71 -104.63 -0.49 -1.36 16 6 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 7 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 8 C -0.07 -0.92 4.89 -104.62 -0.51 -1.43 16 9 C 0.09 1.18 5.12 -4.98 -0.03 1.15 16 10 N -0.53 -8.40 4.70 -235.91 -1.11 -9.51 16 11 C 0.06 0.95 5.25 -3.77 -0.02 0.93 16 12 C 0.07 1.35 5.24 -3.77 -0.02 1.34 16 13 N -0.54 -11.99 4.92 -235.91 -1.16 -13.15 16 14 C 0.19 4.90 5.14 -4.98 -0.03 4.88 16 15 C -0.55 -15.27 7.66 -34.44 -0.26 -15.54 16 16 H 0.06 1.63 5.82 -52.48 -0.31 1.33 16 17 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.06 1.27 5.32 -3.76 -0.02 1.25 16 24 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 25 C -0.11 -1.30 7.92 -39.58 -0.31 -1.61 16 26 C -0.12 -1.25 7.96 -39.58 -0.32 -1.56 16 27 H 0.06 0.51 6.26 -51.93 -0.33 0.18 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.08 0.90 7.97 -51.92 -0.41 0.49 16 39 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.14 5.95 -51.93 -0.31 0.83 16 42 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.05 1.04 6.78 -51.93 -0.35 0.69 16 48 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 49 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.12 1.28 7.99 -52.49 -0.42 0.86 16 52 H 0.12 1.07 8.04 -52.49 -0.42 0.65 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -29.72 398.97 -12.79 -42.51 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -9.62 Total: -1.30 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.63 Total: -15.56 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -1.53 Total: -48.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.72 -12.79 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.557 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds