Wall clock time and date at job start Tue Mar 31 2020 11:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.52995 * 109.47399 * 240.00114 * 2 1 3 5 5 C 1.50702 * 109.47184 * 294.99791 * 4 2 1 6 6 C 1.38229 * 120.00246 * 269.73221 * 5 4 2 7 7 C 1.38234 * 120.00324 * 179.76201 * 6 5 4 8 8 C 1.38242 * 119.99763 * 0.50507 * 7 6 5 9 9 C 1.50699 * 120.00173 * 179.72437 * 8 7 6 10 10 N 1.46894 * 109.47367 * 270.02114 * 9 8 7 11 11 C 1.46957 * 111.00066 * 293.80244 * 10 9 8 12 12 C 1.53049 * 109.36646 * 176.81073 * 11 10 9 13 13 N 1.46956 * 109.36606 * 58.39973 * 12 11 10 14 14 C 1.46898 * 111.00253 * 176.81616 * 13 12 11 15 15 C 1.50700 * 109.47395 * 58.97351 * 14 13 12 16 16 H 1.08003 * 120.00006 * 5.00814 * 15 14 13 17 17 C 1.37878 * 120.00109 * 185.01699 * 15 14 13 18 18 N 1.31520 * 119.99818 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99842 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47264 * 60.00035 * 19 17 15 21 21 H 1.48504 * 109.46676 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47468 * 299.99310 * 19 17 15 23 23 C 1.46962 * 110.87909 * 300.67917 * 13 12 11 24 24 C 1.46956 * 111.00423 * 169.99721 * 10 9 8 25 25 C 1.38236 * 119.99707 * 359.74237 * 8 7 6 26 26 C 1.38234 * 119.99742 * 89.99419 * 5 4 2 27 27 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46846 * 300.00465 * 1 2 3 29 29 H 1.09003 * 109.47026 * 59.99992 * 1 2 3 30 30 H 1.09000 * 109.47165 * 119.99510 * 2 1 3 31 31 H 1.09000 * 109.46965 * 59.99582 * 3 2 1 32 32 H 1.08995 * 109.47581 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47131 * 299.99943 * 3 2 1 34 34 H 1.08998 * 109.47785 * 54.99635 * 4 2 1 35 35 H 1.09003 * 109.47527 * 175.00388 * 4 2 1 36 36 H 1.08004 * 120.00294 * 359.97438 * 6 5 4 37 37 H 1.07998 * 120.00622 * 180.23015 * 7 6 5 38 38 H 1.09007 * 109.46714 * 30.02307 * 9 8 7 39 39 H 1.08999 * 109.47051 * 150.01560 * 9 8 7 40 40 H 1.09007 * 109.48528 * 296.77485 * 11 10 9 41 41 H 1.09001 * 109.48973 * 56.83859 * 11 10 9 42 42 H 1.09004 * 109.48855 * 298.43184 * 12 11 10 43 43 H 1.08998 * 109.48851 * 178.36900 * 12 11 10 44 44 H 1.08993 * 109.47436 * 178.97642 * 14 13 12 45 45 H 1.09005 * 109.46980 * 298.97675 * 14 13 12 46 46 H 0.96998 * 119.99788 * 180.02562 * 18 17 15 47 47 H 1.09007 * 109.48837 * 299.35510 * 23 13 12 48 48 H 1.08991 * 109.48963 * 179.28947 * 23 13 12 49 49 H 1.08997 * 109.48723 * 303.15899 * 24 10 9 50 50 H 1.09004 * 109.48502 * 63.22165 * 24 10 9 51 51 H 1.08001 * 119.99641 * 179.97438 * 25 8 7 52 52 H 1.07998 * 120.00380 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4840 -3.0974 -0.6000 7 6 2.1162 -4.4286 -0.5403 8 6 0.9104 -4.8373 -1.0788 9 6 0.5121 -6.2895 -1.0193 10 7 1.0022 -6.9813 -2.2189 11 6 0.3258 -6.4858 -3.4258 12 6 0.9191 -7.1725 -4.6582 13 7 0.7602 -8.6278 -4.5289 14 6 1.2504 -9.3195 -5.7285 15 6 2.7053 -8.9886 -5.9401 16 1 3.2362 -8.3964 -5.2094 17 6 3.3586 -9.4415 -7.0667 18 7 2.7121 -10.1629 -7.9563 19 14 5.1622 -9.0319 -7.3285 20 1 5.9627 -9.5806 -6.2046 21 1 5.6258 -9.6323 -8.6052 22 1 5.3320 -7.5576 -7.3839 23 6 1.4367 -9.1233 -3.3220 24 6 0.8434 -8.4365 -2.0896 25 6 0.0701 -3.9139 -1.6723 26 6 0.4356 -2.5819 -1.7273 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6055 -0.2618 -2.1370 35 1 3.1264 -0.6443 -1.2951 36 1 3.4282 -2.7790 -0.1834 37 1 2.7728 -5.1501 -0.0768 38 1 0.9468 -6.7493 -0.1316 39 1 -0.5742 -6.3668 -0.9735 40 1 -0.7394 -6.7083 -3.3630 41 1 0.4684 -5.4081 -3.5061 42 1 1.9784 -6.9279 -4.7362 43 1 0.3992 -6.8280 -5.5521 44 1 1.1378 -10.3958 -5.5988 45 1 0.6744 -8.9958 -6.5955 46 1 3.1718 -10.4819 -8.7486 47 1 2.5019 -8.9007 -3.3848 48 1 1.2941 -10.2009 -3.2417 49 1 1.3633 -8.7810 -1.1957 50 1 -0.2159 -8.6812 -2.0116 51 1 -0.8718 -4.2333 -2.0934 52 1 -0.2206 -1.8607 -2.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:19 Heat of formation + Delta-G solvation = -3.146522 kcal Electronic energy + Delta-G solvation = -26522.368127 eV Core-core repulsion = 23098.863720 eV Total energy + Delta-G solvation = -3423.504407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83482 -39.85104 -37.51908 -36.39265 -34.52315 -32.75341 -31.94949 -31.58208 -30.04326 -28.22289 -27.95552 -26.62521 -24.82567 -24.35957 -23.47133 -23.16458 -21.66787 -20.79026 -20.63887 -18.47063 -17.30272 -17.09088 -16.62572 -16.45871 -16.17982 -15.84451 -15.76359 -15.40959 -15.35950 -15.14405 -14.88762 -14.76820 -14.23068 -14.19906 -13.78393 -13.50330 -13.31628 -13.16957 -13.10735 -12.96191 -12.85610 -12.79018 -12.57270 -12.46294 -12.18585 -12.14571 -12.09848 -11.84034 -11.78908 -11.71974 -11.64741 -11.47865 -11.44275 -11.27279 -10.61619 -9.71397 -9.44493 -9.21165 -9.01116 -8.16548 -6.35814 0.46170 0.58787 1.35383 1.36937 1.45337 2.36334 2.74057 3.07848 3.23824 3.37820 3.80358 3.91045 3.96179 4.05409 4.09855 4.12352 4.22279 4.25959 4.31097 4.42013 4.44604 4.50932 4.55616 4.63470 4.70013 4.73230 4.76485 4.80382 4.85262 4.88150 4.90735 4.99176 5.07463 5.08800 5.09873 5.11912 5.19107 5.22805 5.24472 5.26681 5.31612 5.36259 5.45876 5.50089 5.58957 5.72079 5.78255 5.80586 6.01703 6.10762 6.11202 6.20437 6.30078 6.51221 6.84356 7.35194 8.85778 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.002710 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.602738 B =10327.892222 C =11279.004174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.075 4.075 5 C -0.084 4.084 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.090 4.090 9 C 0.098 3.902 10 N -0.545 5.545 11 C 0.073 3.927 12 C 0.069 3.931 13 N -0.542 5.542 14 C 0.200 3.800 15 C -0.554 4.554 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.957 3.043 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.272 1.272 23 C 0.064 3.936 24 C 0.071 3.929 25 C -0.120 4.120 26 C -0.122 4.122 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.020 0.980 43 H 0.059 0.941 44 H 0.005 0.995 45 H 0.006 0.994 46 H 0.265 0.735 47 H 0.021 0.979 48 H 0.067 0.933 49 H 0.095 0.905 50 H 0.042 0.958 51 H 0.124 0.876 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 19.916 19.284 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.112 4.112 5 C -0.084 4.084 6 C -0.147 4.147 7 C -0.126 4.126 8 C -0.090 4.090 9 C -0.029 4.029 10 N -0.270 5.270 11 C -0.055 4.055 12 C -0.060 4.060 13 N -0.266 5.266 14 C 0.073 3.927 15 C -0.593 4.593 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.065 4.065 24 C -0.057 4.057 25 C -0.138 4.138 26 C -0.140 4.140 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.085 0.915 49 H 0.113 0.887 50 H 0.061 0.939 51 H 0.141 0.859 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.284 19.801 19.121 27.858 hybrid contribution 0.950 -0.388 -0.832 1.321 sum -3.334 19.414 18.289 26.879 Atomic orbital electron populations 1.21908 0.95147 1.01706 1.01905 1.21039 0.96120 0.96226 0.97198 1.21838 1.01144 0.95172 1.02158 1.20705 1.01391 0.90177 0.98913 1.20050 0.94450 0.96267 0.97668 1.21213 1.00119 0.92926 1.00411 1.21144 0.95766 0.96183 0.99524 1.19793 0.95343 0.94780 0.99111 1.21035 0.98195 0.90665 0.92973 1.62103 1.57805 1.04494 1.02570 1.22090 0.95526 0.99052 0.88846 1.21894 0.98516 0.88410 0.97205 1.62637 1.55852 1.04481 1.03636 1.19395 0.92667 0.92942 0.87696 1.21906 0.97695 1.33497 1.06209 0.92888 1.25809 1.02630 0.94741 0.95598 1.70056 1.38393 1.36699 1.11399 0.85634 0.79997 0.78613 0.77612 1.19530 1.20437 1.19705 1.21975 0.96059 0.98540 0.89916 1.22118 0.99464 0.86726 0.97405 1.21197 0.99950 0.93444 0.99245 1.21164 0.96808 0.95672 1.00338 0.93074 0.92487 0.92360 0.91719 0.92211 0.92407 0.92380 0.90703 0.90718 0.85104 0.85751 0.88891 0.93436 0.94251 0.89859 0.96176 0.92291 0.97704 0.97568 0.92563 0.96094 0.91501 0.88667 0.93943 0.85852 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.76 71.98 0.63 -1.29 16 2 C -0.09 -1.12 2.91 -10.79 -0.03 -1.15 16 3 C -0.15 -1.53 9.19 71.98 0.66 -0.87 16 4 C -0.07 -1.10 4.84 29.85 0.14 -0.96 16 5 C -0.08 -1.61 4.71 -19.87 -0.09 -1.70 16 6 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 7 C -0.11 -2.42 9.70 22.27 0.22 -2.20 16 8 C -0.09 -2.08 4.89 -19.86 -0.10 -2.18 16 9 C 0.10 2.27 5.12 85.56 0.44 2.71 16 10 N -0.54 -16.32 4.70 -900.29 -4.23 -20.55 16 11 C 0.07 2.35 5.25 86.31 0.45 2.81 16 12 C 0.07 2.85 5.24 86.31 0.45 3.31 16 13 N -0.54 -24.39 4.92 -900.28 -4.43 -28.82 16 14 C 0.20 10.90 5.14 85.56 0.44 11.34 16 15 C -0.55 -31.76 7.66 25.60 0.20 -31.56 16 16 H 0.05 3.05 5.82 -2.91 -0.02 3.03 16 17 C 0.01 0.67 5.46 84.65 0.46 1.13 16 18 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 19 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 23 C 0.06 2.54 5.32 86.31 0.46 3.00 16 24 C 0.07 2.14 5.61 86.31 0.48 2.62 16 25 C -0.12 -2.60 7.92 22.27 0.18 -2.43 16 26 C -0.12 -2.40 7.96 22.27 0.18 -2.23 16 27 H 0.05 0.77 6.26 -2.39 -0.01 0.75 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 36 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.09 1.88 7.97 -2.38 -0.02 1.86 16 39 H 0.05 1.03 8.06 -2.39 -0.02 1.01 16 40 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.08 2.52 5.95 -2.39 -0.01 2.51 16 42 H 0.02 0.94 6.62 -2.38 -0.02 0.93 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.00 0.28 8.12 -2.39 -0.02 0.26 16 45 H 0.01 0.36 8.14 -2.38 -0.02 0.35 16 46 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 47 H 0.02 0.94 6.78 -2.38 -0.02 0.92 16 48 H 0.07 2.63 8.12 -2.39 -0.02 2.61 16 49 H 0.10 2.41 8.07 -2.39 -0.02 2.39 16 50 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 51 H 0.12 2.46 7.99 -2.91 -0.02 2.44 16 52 H 0.13 2.15 8.04 -2.91 -0.02 2.12 16 Total: -1.00 -64.42 398.97 -0.11 -64.53 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.85 Total: 15.58 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 5.39 Total: -22.05 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -8.37 Total: -105.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.42 -0.11 -64.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.387 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds