Wall clock time and date at job start Tue Mar 31 2020 11:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47338 * 2 1 4 4 C 1.53003 * 109.47314 * 240.00686 * 2 1 3 5 5 C 1.52999 * 109.47159 * 64.99720 * 4 2 1 6 6 C 1.50699 * 109.46937 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99957 * 269.72594 * 6 5 4 8 8 C 1.38237 * 119.99578 * 179.76892 * 7 6 5 9 9 C 1.38232 * 120.00255 * 0.50674 * 8 7 6 10 10 C 1.38232 * 120.00210 * 359.74069 * 9 8 7 11 11 C 1.38234 * 119.99659 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47571 * 120.00355 * 2 1 3 13 13 N 1.46903 * 109.46790 * 295.00399 * 12 2 1 14 14 C 1.46902 * 110.99477 * 179.97438 * 13 12 2 15 15 C 1.53041 * 109.45620 * 204.99438 * 14 13 12 16 16 C 1.53197 * 109.31035 * 178.61515 * 15 14 13 17 17 N 1.46921 * 108.89220 * 54.56963 * 16 15 14 18 18 C 1.36934 * 120.63409 * 126.46494 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92132 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92408 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48499 * 109.47320 * 89.99982 * 22 20 18 24 24 H 1.48500 * 109.47299 * 209.99808 * 22 20 18 25 25 H 1.48507 * 109.47261 * 329.99989 * 22 20 18 26 26 C 1.46963 * 118.71124 * 306.63494 * 17 16 15 27 27 C 1.53042 * 109.46139 * 84.93252 * 14 13 12 28 28 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47292 * 299.99473 * 1 2 3 30 30 H 1.08996 * 109.47213 * 59.99464 * 1 2 3 31 31 H 1.08998 * 109.47507 * 185.00052 * 4 2 1 32 32 H 1.09001 * 109.46806 * 304.99623 * 4 2 1 33 33 H 1.08997 * 109.46895 * 299.99811 * 5 4 2 34 34 H 1.08993 * 109.47081 * 60.00112 * 5 4 2 35 35 H 1.07991 * 119.99709 * 0.02562 * 7 6 5 36 36 H 1.08009 * 119.99607 * 180.23331 * 8 7 6 37 37 H 1.08000 * 119.99946 * 179.72796 * 9 8 7 38 38 H 1.07994 * 120.00401 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.99800 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47266 * 174.99958 * 12 2 1 41 41 H 1.09003 * 109.46752 * 54.99876 * 12 2 1 42 42 H 1.00897 * 110.99988 * 303.94443 * 13 12 2 43 43 H 1.08996 * 109.46475 * 324.96741 * 14 13 12 44 44 H 1.09005 * 109.49645 * 58.66880 * 15 14 13 45 45 H 1.08998 * 109.50347 * 298.56618 * 15 14 13 46 46 H 1.09000 * 109.58445 * 174.42964 * 16 15 14 47 47 H 1.09004 * 109.58739 * 294.70519 * 16 15 14 48 48 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.47297 * 293.57143 * 26 17 16 50 50 H 1.09005 * 109.70555 * 173.29008 * 26 17 16 51 51 H 1.09004 * 109.49452 * 301.33649 * 27 14 13 52 52 H 1.08996 * 109.50041 * 61.42832 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0692 -2.4953 6 6 2.1371 -0.6414 -3.7258 7 6 3.3881 -0.3446 -4.2335 8 6 3.8503 -0.9999 -5.3595 9 6 3.0574 -1.9445 -5.9839 10 6 1.8043 -2.2377 -5.4792 11 6 1.3440 -1.5858 -4.3505 12 6 2.0401 -0.7213 1.2492 13 7 1.6514 0.0373 2.4456 14 6 2.1248 -0.6274 3.6671 15 6 1.2356 -0.2226 4.8451 16 6 1.7110 -0.9444 6.1100 17 7 3.1396 -0.6649 6.3088 18 6 3.5936 -0.1643 7.4998 19 1 2.9426 0.4390 8.1151 20 6 4.8903 -0.4323 7.9162 21 7 5.5702 -1.4133 7.3613 22 14 5.6705 0.5992 9.2640 23 1 5.3842 -0.0146 10.5856 24 1 7.1393 0.6593 9.0539 25 1 5.1081 1.9731 9.2241 26 6 4.0712 -0.9294 5.2033 27 6 3.5695 -0.2078 3.9486 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2953 33 1 0.5489 0.1473 -2.5390 34 1 2.0698 1.0677 -2.4493 35 1 4.0059 0.3962 -3.7480 36 1 4.8294 -0.7707 -5.7540 37 1 3.4168 -2.4533 -6.8661 38 1 1.1846 -2.9753 -5.9673 39 1 0.3648 -1.8146 -3.9564 40 1 3.1264 -0.7995 1.2055 41 1 1.6054 -1.7199 1.2950 42 1 1.9882 0.9871 2.3967 43 1 2.0803 -1.7081 3.5331 44 1 0.2031 -0.5008 4.6338 45 1 1.2991 0.8550 4.9955 46 1 1.1453 -0.5854 6.9699 47 1 1.5609 -2.0180 5.9964 48 1 6.4762 -1.6008 7.6526 49 1 4.1161 -2.0020 5.0148 50 1 5.0640 -0.5623 5.4636 51 1 4.1980 -0.4753 3.0992 52 1 3.6110 0.8697 4.1074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611439117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:30 Heat of formation + Delta-G solvation = 17.254028 kcal Electronic energy + Delta-G solvation = -25806.114948 eV Core-core repulsion = 22383.495176 eV Total energy + Delta-G solvation = -3422.619773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.63349 -38.33323 -36.87989 -34.63777 -32.84487 -31.56882 -31.15637 -29.82548 -29.30542 -28.09747 -26.08160 -24.61228 -23.27080 -22.84091 -22.04749 -21.34486 -21.03737 -20.19018 -19.02462 -17.06447 -16.78026 -15.77306 -15.55973 -15.08443 -14.98536 -14.89989 -14.54986 -14.05576 -13.73034 -13.60851 -13.54180 -13.45185 -13.17874 -13.00558 -12.79420 -12.60025 -12.26815 -12.05425 -12.01587 -11.62668 -11.43354 -11.37144 -11.21196 -11.05963 -10.75880 -10.69687 -10.67847 -10.65186 -10.52052 -10.36448 -10.14109 -9.97274 -9.63948 -9.46586 -9.19562 -8.92229 -8.47183 -7.95963 -6.63112 -5.76546 -3.18462 1.08877 1.12618 3.38269 3.45138 3.47815 3.50684 4.29668 4.51778 4.54609 4.59675 4.73524 4.79417 4.84683 4.86976 5.08897 5.16310 5.25180 5.32482 5.36537 5.42115 5.46155 5.51573 5.58444 5.63285 5.66620 5.74937 5.76496 5.79985 5.85581 5.93325 5.97480 6.00961 6.06602 6.19681 6.20016 6.24130 6.30611 6.36008 6.37427 6.43789 6.53925 6.60187 6.66334 6.71916 6.74374 6.86925 7.05266 7.36710 7.44374 7.64500 7.73379 7.81927 8.48031 9.24147 9.88142 10.45404 11.32113 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001996 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.184707 B =14027.295201 C =14747.822614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.082 4.082 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.119 4.119 12 C 0.063 3.937 13 N -0.687 5.687 14 C 0.095 3.905 15 C -0.116 4.116 16 C 0.144 3.856 17 N -0.592 5.592 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.175 3.825 27 C -0.166 4.166 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.027 0.973 41 H 0.067 0.933 42 H 0.335 0.665 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.085 0.915 51 H 0.043 0.957 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 1.294 -25.251 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.145 4.145 5 C -0.119 4.119 6 C -0.077 4.077 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.066 4.066 13 N -0.316 5.316 14 C -0.014 4.014 15 C -0.156 4.156 16 C 0.018 3.982 17 N -0.315 5.315 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.049 3.951 27 C -0.207 4.207 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.152 0.848 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.103 0.897 51 H 0.062 0.938 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.316 0.951 -25.161 26.517 hybrid contribution 1.601 0.565 0.552 1.786 sum -6.714 1.516 -24.609 25.553 Atomic orbital electron populations 1.21762 0.94631 1.01614 1.01571 1.21148 0.96728 0.99372 0.93441 0.91467 1.21590 1.01000 0.99152 0.92802 1.20692 1.01403 0.98488 0.91350 1.19996 0.94404 0.96782 0.96545 1.21098 0.95737 1.00282 0.96569 1.21161 0.99709 0.96727 0.96087 1.21137 0.94798 0.98534 1.00248 1.21151 0.96229 0.99756 0.96591 1.21080 0.99903 0.96694 0.95986 1.21982 0.97440 0.97663 0.89535 1.60715 1.63831 1.05546 1.01498 1.21488 0.93387 0.97716 0.88790 1.21970 0.97676 1.00767 0.95218 1.20926 0.86768 0.95884 0.94665 1.44048 1.01098 1.75221 1.11162 1.19178 0.97323 1.24248 0.97194 0.91758 1.25049 0.99132 0.97128 0.98523 1.70036 1.11505 1.28563 1.44779 0.86312 0.78493 0.80310 0.81767 1.21393 1.21614 1.20512 1.20677 0.95161 0.95433 0.83861 1.22839 0.96359 1.01276 1.00252 0.93194 0.91397 0.93538 0.91945 0.91755 0.90631 0.91054 0.86120 0.86197 0.86314 0.86215 0.86122 0.95460 0.91428 0.84774 0.91519 0.92676 0.92598 0.92788 0.96657 0.93711 0.96631 0.89677 0.93844 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.84 37.15 0.33 -1.00 16 2 C -0.09 -0.87 2.53 -90.62 -0.23 -1.09 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.96 4.66 -26.73 -0.12 -1.08 16 5 C -0.08 -0.66 5.10 -27.88 -0.14 -0.80 16 6 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 7 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 8 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 9 C -0.13 -1.01 10.05 -39.59 -0.40 -1.40 16 10 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 11 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 12 C 0.06 0.78 4.87 -3.82 -0.02 0.76 16 13 N -0.69 -9.63 5.70 -106.68 -0.61 -10.24 16 14 C 0.10 1.63 2.43 -67.67 -0.16 1.46 16 15 C -0.12 -2.10 5.69 -26.61 -0.15 -2.25 16 16 C 0.14 3.10 6.51 -3.71 -0.02 3.08 16 17 N -0.59 -15.09 3.00 -172.29 -0.52 -15.60 16 18 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 19 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 21 N -0.90 -26.59 11.20 55.49 0.62 -25.97 16 22 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.18 4.24 5.30 -3.69 -0.02 4.22 16 27 C -0.17 -3.20 5.33 -26.61 -0.14 -3.34 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 30 H 0.05 0.39 6.56 -51.93 -0.34 0.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.57 6.51 -51.93 -0.34 0.23 16 34 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.03 0.36 7.41 -51.93 -0.38 -0.03 16 41 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 42 H 0.33 4.58 8.48 -39.29 -0.33 4.25 16 43 H 0.07 1.20 7.80 -51.93 -0.40 0.80 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 51 H 0.04 0.77 7.42 -51.93 -0.39 0.39 16 52 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -29.59 403.09 -12.50 -42.09 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -9.62 Total: 2.11 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -3.42 Total: -15.34 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.50 Total: -51.80 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.59 -12.50 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.345 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds