Wall clock time and date at job start Tue Mar 31 2020 11:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47338 * 2 1 4 4 C 1.53003 * 109.47314 * 240.00686 * 2 1 3 5 5 C 1.52999 * 109.47159 * 64.99720 * 4 2 1 6 6 C 1.50699 * 109.46937 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99957 * 269.72594 * 6 5 4 8 8 C 1.38237 * 119.99578 * 179.76892 * 7 6 5 9 9 C 1.38232 * 120.00255 * 0.50674 * 8 7 6 10 10 C 1.38232 * 120.00210 * 359.74069 * 9 8 7 11 11 C 1.38234 * 119.99659 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47571 * 120.00355 * 2 1 3 13 13 N 1.46903 * 109.46790 * 295.00399 * 12 2 1 14 14 C 1.46902 * 110.99477 * 179.97438 * 13 12 2 15 15 C 1.53041 * 109.45620 * 204.99438 * 14 13 12 16 16 C 1.53197 * 109.31035 * 178.61515 * 15 14 13 17 17 N 1.46921 * 108.89220 * 54.56963 * 16 15 14 18 18 C 1.36934 * 120.63409 * 126.46494 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92132 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92408 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48499 * 109.47320 * 89.99982 * 22 20 18 24 24 H 1.48500 * 109.47299 * 209.99808 * 22 20 18 25 25 H 1.48507 * 109.47261 * 329.99989 * 22 20 18 26 26 C 1.46963 * 118.71124 * 306.63494 * 17 16 15 27 27 C 1.53042 * 109.46139 * 84.93252 * 14 13 12 28 28 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47292 * 299.99473 * 1 2 3 30 30 H 1.08996 * 109.47213 * 59.99464 * 1 2 3 31 31 H 1.08998 * 109.47507 * 185.00052 * 4 2 1 32 32 H 1.09001 * 109.46806 * 304.99623 * 4 2 1 33 33 H 1.08997 * 109.46895 * 299.99811 * 5 4 2 34 34 H 1.08993 * 109.47081 * 60.00112 * 5 4 2 35 35 H 1.07991 * 119.99709 * 0.02562 * 7 6 5 36 36 H 1.08009 * 119.99607 * 180.23331 * 8 7 6 37 37 H 1.08000 * 119.99946 * 179.72796 * 9 8 7 38 38 H 1.07994 * 120.00401 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.99800 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47266 * 174.99958 * 12 2 1 41 41 H 1.09003 * 109.46752 * 54.99876 * 12 2 1 42 42 H 1.00897 * 110.99988 * 303.94443 * 13 12 2 43 43 H 1.08996 * 109.46475 * 324.96741 * 14 13 12 44 44 H 1.09005 * 109.49645 * 58.66880 * 15 14 13 45 45 H 1.08998 * 109.50347 * 298.56618 * 15 14 13 46 46 H 1.09000 * 109.58445 * 174.42964 * 16 15 14 47 47 H 1.09004 * 109.58739 * 294.70519 * 16 15 14 48 48 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.47297 * 293.57143 * 26 17 16 50 50 H 1.09005 * 109.70555 * 173.29008 * 26 17 16 51 51 H 1.09004 * 109.49452 * 301.33649 * 27 14 13 52 52 H 1.08996 * 109.50041 * 61.42832 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0692 -2.4953 6 6 2.1371 -0.6414 -3.7258 7 6 3.3881 -0.3446 -4.2335 8 6 3.8503 -0.9999 -5.3595 9 6 3.0574 -1.9445 -5.9839 10 6 1.8043 -2.2377 -5.4792 11 6 1.3440 -1.5858 -4.3505 12 6 2.0401 -0.7213 1.2492 13 7 1.6514 0.0373 2.4456 14 6 2.1248 -0.6274 3.6671 15 6 1.2356 -0.2226 4.8451 16 6 1.7110 -0.9444 6.1100 17 7 3.1396 -0.6649 6.3088 18 6 3.5936 -0.1643 7.4998 19 1 2.9426 0.4390 8.1151 20 6 4.8903 -0.4323 7.9162 21 7 5.5702 -1.4133 7.3613 22 14 5.6705 0.5992 9.2640 23 1 5.3842 -0.0146 10.5856 24 1 7.1393 0.6593 9.0539 25 1 5.1081 1.9731 9.2241 26 6 4.0712 -0.9294 5.2033 27 6 3.5695 -0.2078 3.9486 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2953 33 1 0.5489 0.1473 -2.5390 34 1 2.0698 1.0677 -2.4493 35 1 4.0059 0.3962 -3.7480 36 1 4.8294 -0.7707 -5.7540 37 1 3.4168 -2.4533 -6.8661 38 1 1.1846 -2.9753 -5.9673 39 1 0.3648 -1.8146 -3.9564 40 1 3.1264 -0.7995 1.2055 41 1 1.6054 -1.7199 1.2950 42 1 1.9882 0.9871 2.3967 43 1 2.0803 -1.7081 3.5331 44 1 0.2031 -0.5008 4.6338 45 1 1.2991 0.8550 4.9955 46 1 1.1453 -0.5854 6.9699 47 1 1.5609 -2.0180 5.9964 48 1 6.4762 -1.6008 7.6526 49 1 4.1161 -2.0020 5.0148 50 1 5.0640 -0.5623 5.4636 51 1 4.1980 -0.4753 3.0992 52 1 3.6110 0.8697 4.1074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611439117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:29 Heat of formation + Delta-G solvation = 3.492773 kcal Electronic energy + Delta-G solvation = -25806.711681 eV Core-core repulsion = 22383.495176 eV Total energy + Delta-G solvation = -3423.216505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24754 -39.73615 -38.00581 -36.01589 -34.14582 -32.95930 -31.73130 -31.52983 -30.82142 -28.90008 -27.29010 -26.12703 -24.33871 -23.74881 -23.42256 -22.86864 -21.77470 -21.22281 -20.47796 -18.76049 -17.62412 -16.91327 -16.50191 -16.27842 -16.08933 -16.00157 -15.77119 -15.35485 -15.18785 -14.93895 -14.76240 -14.38771 -14.26409 -14.12148 -13.94858 -13.72237 -13.36930 -13.11936 -13.08323 -12.94057 -12.82700 -12.57774 -12.46373 -12.34900 -12.12104 -12.06530 -11.98610 -11.87850 -11.76303 -11.55710 -11.45424 -11.42070 -11.29849 -11.03931 -10.57141 -9.79059 -9.53492 -9.23353 -8.68379 -7.88644 -5.34241 0.48972 0.53063 1.45281 1.46477 1.56654 2.50257 2.90036 3.19480 3.29843 3.68901 3.86661 3.93131 3.95589 4.03880 4.09710 4.19475 4.20975 4.30710 4.37611 4.41657 4.45551 4.54221 4.64957 4.68679 4.69929 4.71819 4.76457 4.84565 4.86602 4.88094 4.92988 4.96547 5.07368 5.15760 5.19500 5.22719 5.23818 5.25037 5.26239 5.32427 5.37554 5.49110 5.54242 5.60523 5.62904 5.63605 5.66132 5.70126 5.79586 6.16952 6.17680 6.38058 6.55310 7.13482 7.85138 8.37380 9.17762 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001996 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.184707 B =14027.295201 C =14747.822614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 H 0.072 0.928 4 C -0.100 4.100 5 C -0.075 4.075 6 C -0.090 4.090 7 C -0.134 4.134 8 C -0.130 4.130 9 C -0.138 4.138 10 C -0.128 4.128 11 C -0.131 4.131 12 C 0.064 3.936 13 N -0.676 5.676 14 C 0.107 3.893 15 C -0.103 4.103 16 C 0.140 3.860 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.067 0.933 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.270 1.270 26 C 0.181 3.819 27 C -0.150 4.150 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.020 0.980 41 H 0.063 0.937 42 H 0.341 0.659 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.011 0.989 48 H 0.249 0.751 49 H -0.008 1.008 50 H 0.050 0.950 51 H 0.057 0.943 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 2.266 -26.645 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.138 4.138 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.152 4.152 8 C -0.148 4.148 9 C -0.156 4.156 10 C -0.146 4.146 11 C -0.149 4.149 12 C -0.066 4.066 13 N -0.305 5.305 14 C -0.003 4.003 15 C -0.142 4.142 16 C 0.014 3.986 17 N -0.334 5.334 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.195 1.195 26 C 0.055 3.945 27 C -0.191 4.191 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.159 0.841 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.029 0.971 48 H 0.058 0.942 49 H 0.010 0.990 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.482 1.936 -26.575 28.282 hybrid contribution 1.926 0.200 0.946 2.155 sum -7.556 2.136 -25.629 26.805 Atomic orbital electron populations 1.21719 0.94126 1.01530 1.01787 1.21062 0.96978 0.99279 0.92434 0.91006 1.21497 1.00422 0.99044 0.92864 1.20631 1.01801 0.98340 0.90481 1.20143 0.94670 0.97219 0.96986 1.21309 0.96045 1.00797 0.97071 1.21436 1.00524 0.96760 0.96058 1.21443 0.94835 0.98490 1.00835 1.21448 0.96603 1.00016 0.96564 1.21312 1.00468 0.96783 0.96332 1.22043 0.97056 0.97646 0.89826 1.60670 1.63252 1.05757 1.00823 1.21259 0.91617 0.97445 0.90013 1.21787 0.98850 0.99977 0.93597 1.21087 0.84760 0.96098 0.96683 1.44319 1.02758 1.75406 1.10930 1.19522 0.97685 1.24041 0.97963 0.91570 1.25841 0.99699 0.98268 1.01118 1.70195 1.11504 1.30158 1.46458 0.85265 0.77142 0.79021 0.78962 1.21027 1.21879 1.19476 1.20478 0.93865 0.94372 0.85787 1.22633 0.98136 1.00279 0.98033 0.93427 0.92533 0.91960 0.92698 0.92101 0.89911 0.90653 0.85517 0.84769 0.84548 0.84515 0.85112 0.96184 0.91888 0.84101 0.92288 0.90359 0.92821 0.92658 0.97099 0.94153 0.99026 0.93129 0.92474 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.84 71.98 0.64 -1.63 16 2 C -0.08 -1.39 2.53 -10.79 -0.03 -1.41 16 3 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 4 C -0.10 -1.63 4.66 30.60 0.14 -1.49 16 5 C -0.08 -1.07 5.10 29.85 0.15 -0.92 16 6 C -0.09 -1.47 5.13 -19.86 -0.10 -1.57 16 7 C -0.13 -2.19 9.70 22.27 0.22 -1.98 16 8 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 9 C -0.14 -1.96 10.05 22.27 0.22 -1.74 16 10 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 11 C -0.13 -2.03 9.70 22.27 0.22 -1.82 16 12 C 0.06 1.46 4.87 86.30 0.42 1.88 16 13 N -0.68 -17.55 5.70 -491.41 -2.80 -20.36 16 14 C 0.11 3.50 2.43 44.94 0.11 3.61 16 15 C -0.10 -3.52 5.69 30.67 0.17 -3.35 16 16 C 0.14 5.94 6.51 86.37 0.56 6.50 16 17 N -0.61 -31.48 3.00 -699.00 -2.10 -33.58 16 18 C -0.26 -14.73 9.58 84.03 0.81 -13.92 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -3.09 4.92 84.86 0.42 -2.67 16 21 N -0.94 -56.60 11.20 21.65 0.24 -56.36 16 22 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 C 0.18 9.01 5.30 86.35 0.46 9.47 16 27 C -0.15 -5.70 5.33 30.67 0.16 -5.54 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.10 7.75 -2.39 -0.02 1.08 16 30 H 0.06 0.86 6.56 -2.39 -0.02 0.85 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.05 6.51 -2.39 -0.02 1.03 16 34 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.13 1.79 8.06 -2.92 -0.02 1.77 16 36 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.02 0.50 7.41 -2.39 -0.02 0.48 16 41 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 42 H 0.34 8.49 8.48 -89.70 -0.76 7.73 16 43 H 0.06 2.06 7.80 -2.39 -0.02 2.05 16 44 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 49 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H 0.05 2.84 6.07 -2.38 -0.01 2.83 16 51 H 0.06 2.00 7.42 -2.38 -0.02 1.98 16 52 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -64.04 403.09 2.49 -61.55 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.10 Total: 21.11 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 5.02 Total: -19.92 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.66 Total: -110.29 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -64.04 2.49 -61.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.045 kcal (2) G-P(sol) polarization free energy of solvation -64.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds