Wall clock time and date at job start Tue Mar 31 2020 11:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47206 * 2 1 4 4 C 1.52990 * 109.47371 * 184.67438 * 3 2 1 5 5 H 1.09006 * 109.47536 * 55.35458 * 4 3 2 6 6 C 1.52995 * 109.47266 * 175.35510 * 4 3 2 7 7 N 1.46894 * 109.47160 * 295.61619 * 6 4 3 8 8 C 1.46905 * 111.00084 * 183.29160 * 7 6 4 9 9 C 1.53049 * 109.45619 * 275.06885 * 8 7 6 10 10 C 1.53192 * 109.30997 * 178.61392 * 9 8 7 11 11 N 1.46934 * 108.77607 * 54.63409 * 10 9 8 12 12 C 1.36931 * 120.62876 * 126.41120 * 11 10 9 13 13 H 1.08007 * 120.00192 * 332.31619 * 12 11 10 14 14 C 1.38816 * 120.00027 * 152.31178 * 12 11 10 15 15 N 1.31623 * 120.00026 * 157.54929 * 14 12 11 16 16 Si 1.86800 * 119.99811 * 337.55331 * 14 12 11 17 17 H 1.48504 * 109.46899 * 91.69462 * 16 14 12 18 18 H 1.48503 * 109.46802 * 211.69254 * 16 14 12 19 19 H 1.48499 * 109.47137 * 331.69370 * 16 14 12 20 20 C 1.46926 * 118.73642 * 306.39220 * 11 10 9 21 21 C 1.53044 * 109.46018 * 155.00313 * 8 7 6 22 22 C 1.50707 * 109.47444 * 295.35834 * 4 3 2 23 23 C 1.38231 * 120.00176 * 119.99836 * 22 4 3 24 24 C 1.38230 * 119.99657 * 180.02562 * 23 22 4 25 25 C 1.38234 * 120.00526 * 359.95510 * 24 23 22 26 26 C 1.38236 * 119.99684 * 359.97438 * 25 24 23 27 27 C 1.38231 * 119.99426 * 299.97677 * 22 4 3 28 28 H 1.08995 * 109.47159 * 59.99726 * 1 2 3 29 29 H 1.08999 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46888 * 299.99794 * 1 2 3 31 31 H 1.09005 * 109.47380 * 240.00469 * 2 1 3 32 32 H 1.09004 * 109.47267 * 120.00217 * 2 1 3 33 33 H 1.09006 * 109.46707 * 64.67352 * 3 2 1 34 34 H 1.08995 * 109.46923 * 304.67696 * 3 2 1 35 35 H 1.09000 * 109.47513 * 55.61820 * 6 4 3 36 36 H 1.09005 * 109.47089 * 175.61559 * 6 4 3 37 37 H 1.00896 * 111.00220 * 59.33595 * 7 6 4 38 38 H 1.08997 * 109.45860 * 35.02251 * 8 7 6 39 39 H 1.09000 * 109.49508 * 298.56162 * 9 8 7 40 40 H 1.08995 * 109.49494 * 58.66255 * 9 8 7 41 41 H 1.08998 * 109.58907 * 294.84693 * 10 9 8 42 42 H 1.08993 * 109.70424 * 174.49199 * 10 9 8 43 43 H 0.96991 * 120.00032 * 180.02562 * 15 14 12 44 44 H 1.09004 * 109.58634 * 293.81515 * 20 11 10 45 45 H 1.09005 * 109.69883 * 173.46592 * 20 11 10 46 46 H 1.08994 * 109.49494 * 301.33052 * 21 8 7 47 47 H 1.08996 * 109.49962 * 61.39967 * 21 8 7 48 48 H 1.08003 * 120.00351 * 359.97438 * 23 22 4 49 49 H 1.08008 * 119.99735 * 179.97438 * 24 23 22 50 50 H 1.08001 * 120.00242 * 179.72638 * 25 24 23 51 51 H 1.08003 * 120.00114 * 179.97438 * 26 25 24 52 52 H 1.08001 * 120.00808 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4442 -0.1175 5 1 3.8622 0.8835 -1.0040 6 6 4.0664 2.8851 -0.2341 7 7 3.5671 3.4777 -1.4820 8 6 4.0926 4.8371 -1.6664 9 6 3.2063 5.8326 -0.9141 10 6 3.7768 7.2446 -1.0800 11 7 3.9227 7.5303 -2.5139 12 6 3.3636 8.6538 -3.0618 13 1 2.4822 9.0908 -2.6160 14 6 3.9297 9.2312 -4.1902 15 7 3.2018 10.0012 -4.9710 16 14 5.7245 8.9152 -4.6004 17 1 5.8267 7.7380 -5.5000 18 1 6.2945 10.1072 -5.2782 19 1 6.4788 8.6491 -3.3493 20 6 4.6802 6.5878 -3.3485 21 6 4.0996 5.1831 -3.1572 22 6 4.1644 0.8015 1.1070 23 6 4.9529 -0.3267 0.9799 24 6 5.5018 -0.9163 2.1032 25 6 5.2630 -0.3773 3.3535 26 6 4.4757 0.7518 3.4804 27 6 3.9256 1.3407 2.3572 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.7466 1.9316 0.9290 34 1 1.6099 1.9799 -0.8451 35 1 3.7039 3.4656 0.6143 36 1 5.1564 2.8914 -0.2395 37 1 2.5585 3.4735 -1.5061 38 1 5.1091 4.8895 -1.2766 39 1 2.1953 5.7986 -1.3201 40 1 3.1830 5.5715 0.1439 41 1 4.7508 7.3046 -0.5945 42 1 3.0990 7.9700 -0.6300 43 1 3.5972 10.4043 -5.7596 44 1 5.7280 6.5942 -3.0480 45 1 4.5988 6.8773 -4.3962 46 1 4.7121 4.4600 -3.6956 47 1 3.0803 5.1547 -3.5421 48 1 5.1394 -0.7480 0.0031 49 1 6.1175 -1.7981 2.0039 50 1 5.6883 -0.8406 4.2315 51 1 4.2888 1.1728 4.4573 52 1 3.3095 2.2222 2.4566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611439212.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:24 Heat of formation + Delta-G solvation = 25.273981 kcal Electronic energy + Delta-G solvation = -26753.788036 eV Core-core repulsion = 23331.516035 eV Total energy + Delta-G solvation = -3422.272001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.94668 -38.38538 -36.72109 -34.75550 -32.83724 -31.80598 -31.11419 -30.38634 -30.03268 -28.35413 -25.94666 -24.29220 -23.19934 -22.75825 -22.34607 -21.80373 -21.31336 -19.97753 -19.45958 -17.18285 -16.83668 -15.91979 -15.61867 -15.20912 -15.08255 -14.78177 -14.50208 -14.34854 -14.10337 -13.66285 -13.63342 -13.54854 -13.20777 -13.11903 -12.84137 -12.67282 -12.53116 -12.29221 -12.20207 -11.84322 -11.70228 -11.59879 -11.40728 -11.10360 -10.89448 -10.76740 -10.74507 -10.72206 -10.63058 -10.51661 -10.14614 -10.04368 -9.64625 -9.44016 -9.12439 -8.86215 -8.57541 -8.16421 -6.94696 -5.93640 -3.27651 1.15933 1.19757 3.35438 3.50773 3.54876 3.57567 4.20041 4.48536 4.56218 4.63368 4.77450 4.78552 4.85517 4.90213 4.96269 5.00102 5.15440 5.20079 5.28865 5.30850 5.33603 5.36468 5.40908 5.51899 5.57979 5.66104 5.66919 5.74530 5.77238 5.83067 5.85132 5.89689 5.93068 5.99381 6.09784 6.12187 6.15217 6.20720 6.27275 6.30884 6.32934 6.38776 6.50007 6.53632 6.64986 6.70626 6.76352 6.80557 6.96537 7.27266 7.56056 7.99610 8.34850 8.97287 9.74980 10.13759 11.22452 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002717 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.284578 B =10302.868695 C =10901.095824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.048 4.048 5 H 0.087 0.913 6 C 0.069 3.931 7 N -0.687 5.687 8 C 0.095 3.905 9 C -0.161 4.161 10 C 0.152 3.848 11 N -0.606 5.606 12 C -0.260 4.260 13 H 0.084 0.916 14 C 0.024 3.976 15 N -0.907 5.907 16 Si 0.880 3.120 17 H -0.287 1.287 18 H -0.303 1.303 19 H -0.272 1.272 20 C 0.127 3.873 21 C -0.118 4.118 22 C -0.065 4.065 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.115 4.115 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.338 0.662 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.262 0.738 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -23.465 14.950 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.150 4.150 4 C -0.066 4.066 5 H 0.105 0.895 6 C -0.061 4.061 7 N -0.317 5.317 8 C -0.014 4.014 9 C -0.202 4.202 10 C 0.025 3.975 11 N -0.329 5.329 12 C -0.388 4.388 13 H 0.101 0.899 14 C -0.175 4.175 15 N -0.550 5.550 16 Si 0.710 3.290 17 H -0.214 1.214 18 H -0.231 1.231 19 H -0.197 1.197 20 C 0.001 3.999 21 C -0.158 4.158 22 C -0.066 4.066 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.133 4.133 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.992 -23.625 14.416 27.694 hybrid contribution 0.542 0.391 0.435 0.797 sum 1.535 -23.235 14.850 27.618 Atomic orbital electron populations 1.21777 0.96044 1.01371 1.01830 1.21500 0.95586 0.96817 1.01928 1.21699 0.94009 0.97158 1.02154 1.20258 0.94960 0.96050 0.95376 0.89508 1.21951 1.00038 0.92959 0.91134 1.60693 1.14296 1.21473 1.35257 1.21497 0.97783 0.85399 0.96722 1.22686 1.00380 0.98561 0.98529 1.20831 0.97532 0.93267 0.85822 1.44370 1.62919 1.23085 1.02571 1.18901 1.07116 1.02537 1.10271 0.89883 1.25280 0.97795 0.97167 0.97242 1.69862 1.35265 1.35620 1.14241 0.86971 0.88042 0.75927 0.78022 1.21441 1.23146 1.19741 1.21334 0.93562 0.88611 0.96413 1.21980 1.01893 0.97506 0.94403 1.19849 0.96872 0.95228 0.94650 1.21092 0.97719 0.95929 0.98676 1.21129 0.99960 0.99977 0.92734 1.21117 0.99364 0.96787 0.97418 1.21139 0.97818 0.96230 0.98536 1.21027 1.00129 0.99979 0.92134 0.92599 0.93029 0.92940 0.92070 0.92178 0.92083 0.91129 0.95190 0.91194 0.84272 0.91306 0.91810 0.93247 0.96229 0.92046 0.92794 0.96079 0.90806 0.92280 0.91850 0.86151 0.86308 0.86422 0.86301 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.01 5.66 -26.73 -0.15 -1.16 16 3 C -0.11 -1.00 4.44 -26.73 -0.12 -1.12 16 4 C -0.05 -0.45 2.25 -91.78 -0.21 -0.66 16 5 H 0.09 0.87 7.88 -51.93 -0.41 0.46 16 6 C 0.07 0.77 4.71 -3.83 -0.02 0.75 16 7 N -0.69 -8.90 6.21 -106.68 -0.66 -9.56 16 8 C 0.10 1.49 2.43 -67.66 -0.16 1.33 16 9 C -0.16 -2.61 5.33 -26.61 -0.14 -2.75 16 10 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 11 N -0.61 -14.54 2.76 -172.31 -0.47 -15.02 16 12 C -0.26 -7.35 10.01 -15.06 -0.15 -7.50 16 13 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 14 C 0.02 0.70 5.19 -17.43 -0.09 0.61 16 15 N -0.91 -28.03 13.97 55.49 0.78 -27.26 16 16 Si 0.88 22.66 24.41 -169.99 -4.15 18.51 16 17 H -0.29 -7.12 6.57 56.52 0.37 -6.74 16 18 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 19 H -0.27 -6.94 6.87 56.52 0.39 -6.55 16 20 C 0.13 2.81 4.23 -3.71 -0.02 2.80 16 21 C -0.12 -2.15 5.69 -26.61 -0.15 -2.30 16 22 C -0.07 -0.62 3.83 -104.62 -0.40 -1.02 16 23 C -0.12 -1.05 9.67 -39.59 -0.38 -1.43 16 24 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 25 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 27 C -0.11 -1.07 8.70 -39.58 -0.34 -1.41 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 7.52 -51.93 -0.39 0.14 16 33 H 0.06 0.54 7.24 -51.93 -0.38 0.17 16 34 H 0.07 0.66 6.53 -51.93 -0.34 0.32 16 35 H 0.03 0.34 6.89 -51.93 -0.36 -0.02 16 36 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 37 H 0.34 4.20 6.73 -39.29 -0.26 3.93 16 38 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.70 7.48 -51.93 -0.39 0.31 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.02 0.47 7.23 -51.93 -0.38 0.09 16 45 H 0.07 1.80 4.63 -51.93 -0.24 1.56 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 48 H 0.12 0.95 7.95 -52.48 -0.42 0.54 16 49 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 50 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 51 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 52 H 0.12 1.04 7.13 -52.49 -0.37 0.67 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -30.36 393.15 -11.19 -41.55 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -9.41 Total: 1.81 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.19 Total: -15.96 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.36 Total: -51.83 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.15 Total: 18.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.36 -11.19 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439212.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.819 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds