Wall clock time and date at job start Tue Mar 31 2020 11:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47206 * 2 1 4 4 C 1.52990 * 109.47371 * 184.67438 * 3 2 1 5 5 H 1.09006 * 109.47536 * 55.35458 * 4 3 2 6 6 C 1.52995 * 109.47266 * 175.35510 * 4 3 2 7 7 N 1.46894 * 109.47160 * 295.61619 * 6 4 3 8 8 C 1.46905 * 111.00084 * 183.29160 * 7 6 4 9 9 C 1.53049 * 109.45619 * 275.06885 * 8 7 6 10 10 C 1.53192 * 109.30997 * 178.61392 * 9 8 7 11 11 N 1.46934 * 108.77607 * 54.63409 * 10 9 8 12 12 C 1.36931 * 120.62876 * 126.41120 * 11 10 9 13 13 H 1.08007 * 120.00192 * 332.31619 * 12 11 10 14 14 C 1.38816 * 120.00027 * 152.31178 * 12 11 10 15 15 N 1.31623 * 120.00026 * 157.54929 * 14 12 11 16 16 Si 1.86800 * 119.99811 * 337.55331 * 14 12 11 17 17 H 1.48504 * 109.46899 * 91.69462 * 16 14 12 18 18 H 1.48503 * 109.46802 * 211.69254 * 16 14 12 19 19 H 1.48499 * 109.47137 * 331.69370 * 16 14 12 20 20 C 1.46926 * 118.73642 * 306.39220 * 11 10 9 21 21 C 1.53044 * 109.46018 * 155.00313 * 8 7 6 22 22 C 1.50707 * 109.47444 * 295.35834 * 4 3 2 23 23 C 1.38231 * 120.00176 * 119.99836 * 22 4 3 24 24 C 1.38230 * 119.99657 * 180.02562 * 23 22 4 25 25 C 1.38234 * 120.00526 * 359.95510 * 24 23 22 26 26 C 1.38236 * 119.99684 * 359.97438 * 25 24 23 27 27 C 1.38231 * 119.99426 * 299.97677 * 22 4 3 28 28 H 1.08995 * 109.47159 * 59.99726 * 1 2 3 29 29 H 1.08999 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46888 * 299.99794 * 1 2 3 31 31 H 1.09005 * 109.47380 * 240.00469 * 2 1 3 32 32 H 1.09004 * 109.47267 * 120.00217 * 2 1 3 33 33 H 1.09006 * 109.46707 * 64.67352 * 3 2 1 34 34 H 1.08995 * 109.46923 * 304.67696 * 3 2 1 35 35 H 1.09000 * 109.47513 * 55.61820 * 6 4 3 36 36 H 1.09005 * 109.47089 * 175.61559 * 6 4 3 37 37 H 1.00896 * 111.00220 * 59.33595 * 7 6 4 38 38 H 1.08997 * 109.45860 * 35.02251 * 8 7 6 39 39 H 1.09000 * 109.49508 * 298.56162 * 9 8 7 40 40 H 1.08995 * 109.49494 * 58.66255 * 9 8 7 41 41 H 1.08998 * 109.58907 * 294.84693 * 10 9 8 42 42 H 1.08993 * 109.70424 * 174.49199 * 10 9 8 43 43 H 0.96991 * 120.00032 * 180.02562 * 15 14 12 44 44 H 1.09004 * 109.58634 * 293.81515 * 20 11 10 45 45 H 1.09005 * 109.69883 * 173.46592 * 20 11 10 46 46 H 1.08994 * 109.49494 * 301.33052 * 21 8 7 47 47 H 1.08996 * 109.49962 * 61.39967 * 21 8 7 48 48 H 1.08003 * 120.00351 * 359.97438 * 23 22 4 49 49 H 1.08008 * 119.99735 * 179.97438 * 24 23 22 50 50 H 1.08001 * 120.00242 * 179.72638 * 25 24 23 51 51 H 1.08003 * 120.00114 * 179.97438 * 26 25 24 52 52 H 1.08001 * 120.00808 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4442 -0.1175 5 1 3.8622 0.8835 -1.0040 6 6 4.0664 2.8851 -0.2341 7 7 3.5671 3.4777 -1.4820 8 6 4.0926 4.8371 -1.6664 9 6 3.2063 5.8326 -0.9141 10 6 3.7768 7.2446 -1.0800 11 7 3.9227 7.5303 -2.5139 12 6 3.3636 8.6538 -3.0618 13 1 2.4822 9.0908 -2.6160 14 6 3.9297 9.2312 -4.1902 15 7 3.2018 10.0012 -4.9710 16 14 5.7245 8.9152 -4.6004 17 1 5.8267 7.7380 -5.5000 18 1 6.2945 10.1072 -5.2782 19 1 6.4788 8.6491 -3.3493 20 6 4.6802 6.5878 -3.3485 21 6 4.0996 5.1831 -3.1572 22 6 4.1644 0.8015 1.1070 23 6 4.9529 -0.3267 0.9799 24 6 5.5018 -0.9163 2.1032 25 6 5.2630 -0.3773 3.3535 26 6 4.4757 0.7518 3.4804 27 6 3.9256 1.3407 2.3572 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.7466 1.9316 0.9290 34 1 1.6099 1.9799 -0.8451 35 1 3.7039 3.4656 0.6143 36 1 5.1564 2.8914 -0.2395 37 1 2.5585 3.4735 -1.5061 38 1 5.1091 4.8895 -1.2766 39 1 2.1953 5.7986 -1.3201 40 1 3.1830 5.5715 0.1439 41 1 4.7508 7.3046 -0.5945 42 1 3.0990 7.9700 -0.6300 43 1 3.5972 10.4043 -5.7596 44 1 5.7280 6.5942 -3.0480 45 1 4.5988 6.8773 -4.3962 46 1 4.7121 4.4600 -3.6956 47 1 3.0803 5.1547 -3.5421 48 1 5.1394 -0.7480 0.0031 49 1 6.1175 -1.7981 2.0039 50 1 5.6883 -0.8406 4.2315 51 1 4.2888 1.1728 4.4573 52 1 3.3095 2.2222 2.4566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611439212.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:23 Heat of formation + Delta-G solvation = 9.198696 kcal Electronic energy + Delta-G solvation = -26754.485113 eV Core-core repulsion = 23331.516035 eV Total energy + Delta-G solvation = -3422.969078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.66889 -39.74277 -37.70863 -36.01533 -34.18028 -33.20387 -31.93548 -31.73956 -31.40535 -29.27149 -27.06918 -25.81669 -24.42379 -23.78241 -23.32377 -22.81040 -22.44628 -21.07252 -20.61153 -18.82207 -17.83730 -17.29927 -16.66943 -16.38291 -15.95304 -15.83097 -15.59532 -15.50040 -15.33728 -15.23049 -14.70755 -14.57950 -14.27223 -14.22715 -14.11931 -13.83561 -13.56287 -13.44366 -13.35542 -13.13792 -12.92889 -12.54988 -12.42682 -12.38408 -12.19904 -12.09091 -11.93949 -11.78858 -11.72263 -11.54978 -11.51695 -11.35925 -11.35115 -11.15522 -10.67910 -9.76074 -9.52282 -9.27094 -8.93069 -8.18035 -5.48095 0.51618 0.56191 1.30254 1.40422 1.50105 2.41582 2.91462 3.03914 3.18072 3.38401 3.76983 3.84993 3.91477 4.06233 4.13437 4.15399 4.20383 4.26775 4.31796 4.34723 4.36957 4.45675 4.50026 4.52748 4.67832 4.69570 4.71055 4.72752 4.78152 4.81661 4.88286 4.97068 4.98934 5.01492 5.09890 5.14185 5.15339 5.16885 5.20976 5.24825 5.26020 5.31810 5.43541 5.46430 5.50125 5.65581 5.68917 5.82345 5.86558 6.11446 6.14214 6.18659 6.52079 6.92006 7.62543 8.03670 9.01988 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002717 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.284578 B =10302.868695 C =10901.095824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.109 4.109 4 C -0.037 4.037 5 H 0.082 0.918 6 C 0.073 3.927 7 N -0.683 5.683 8 C 0.105 3.895 9 C -0.147 4.147 10 C 0.146 3.854 11 N -0.620 5.620 12 C -0.250 4.250 13 H 0.050 0.950 14 C -0.033 4.033 15 N -0.955 5.955 16 Si 0.944 3.056 17 H -0.272 1.272 18 H -0.310 1.310 19 H -0.265 1.265 20 C 0.122 3.878 21 C -0.109 4.109 22 C -0.074 4.074 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.128 4.128 27 C -0.126 4.126 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.343 0.657 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.052 0.948 43 H 0.262 0.738 44 H 0.030 0.970 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.050 0.950 48 H 0.127 0.873 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.134 0.866 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -26.001 16.489 30.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.146 4.146 4 C -0.056 4.056 5 H 0.100 0.900 6 C -0.056 4.056 7 N -0.314 5.314 8 C -0.005 4.005 9 C -0.188 4.188 10 C 0.020 3.980 11 N -0.345 5.345 12 C -0.380 4.380 13 H 0.068 0.932 14 C -0.228 4.228 15 N -0.601 5.601 16 Si 0.773 3.227 17 H -0.199 1.199 18 H -0.238 1.238 19 H -0.189 1.189 20 C -0.003 4.003 21 C -0.148 4.148 22 C -0.075 4.075 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.144 4.144 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.163 0.837 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.145 0.855 49 H 0.154 0.846 50 H 0.154 0.846 51 H 0.151 0.849 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.217 -26.213 15.990 30.785 hybrid contribution 0.102 1.130 0.057 1.136 sum 2.319 -25.083 16.047 29.867 Atomic orbital electron populations 1.21774 0.95668 1.01778 1.01769 1.21438 0.95860 0.96366 1.01660 1.21660 0.93556 0.97461 1.01965 1.20119 0.95244 0.94820 0.95411 0.89978 1.21944 0.99588 0.93863 0.90211 1.60599 1.14702 1.19541 1.36525 1.21288 0.97947 0.86576 0.94666 1.22541 0.99595 0.96239 1.00412 1.21025 0.98217 0.95347 0.83378 1.44502 1.63028 1.22334 1.04588 1.18855 1.05951 1.03462 1.09710 0.93191 1.25893 1.01510 0.97804 0.97614 1.69984 1.36920 1.37937 1.15243 0.85935 0.82780 0.75882 0.78140 1.19886 1.23838 1.18946 1.21375 0.93979 0.90291 0.94690 1.21829 1.01063 0.95301 0.96653 1.19849 0.97394 0.95662 0.94559 1.21279 0.97848 0.96051 0.99403 1.21406 0.99913 1.00498 0.92620 1.21420 0.99051 0.96653 0.98162 1.21398 0.97699 0.96426 0.99079 1.21153 1.00548 1.00342 0.92395 0.92770 0.92439 0.92876 0.92134 0.92597 0.92006 0.91524 0.94783 0.91862 0.83695 0.90998 0.92763 0.90387 0.94980 0.92898 0.92929 0.95239 0.93326 0.90619 0.93068 0.85473 0.84576 0.84558 0.84857 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.44 16 2 C -0.12 -1.74 5.66 30.60 0.17 -1.57 16 3 C -0.11 -1.73 4.44 30.59 0.14 -1.59 16 4 C -0.04 -0.63 2.25 -11.54 -0.03 -0.66 16 5 H 0.08 1.49 7.88 -2.38 -0.02 1.48 16 6 C 0.07 1.46 4.71 86.30 0.41 1.86 16 7 N -0.68 -15.95 6.21 -491.41 -3.05 -19.00 16 8 C 0.11 3.02 2.43 44.95 0.11 3.13 16 9 C -0.15 -4.45 5.33 30.68 0.16 -4.28 16 10 C 0.15 5.60 6.52 86.36 0.56 6.16 16 11 N -0.62 -29.50 2.76 -699.07 -1.93 -31.43 16 12 C -0.25 -14.43 10.01 84.04 0.84 -13.59 16 13 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 14 C -0.03 -1.97 5.19 84.86 0.44 -1.53 16 15 N -0.95 -60.78 13.97 21.65 0.30 -60.48 16 16 Si 0.94 47.31 24.41 68.60 1.67 48.98 16 17 H -0.27 -12.88 6.57 99.48 0.65 -12.23 16 18 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 19 H -0.26 -12.79 6.87 99.48 0.68 -12.11 16 20 C 0.12 5.24 4.23 86.36 0.36 5.61 16 21 C -0.11 -3.75 5.69 30.67 0.17 -3.58 16 22 C -0.07 -1.26 3.83 -19.87 -0.08 -1.34 16 23 C -0.13 -2.07 9.67 22.27 0.22 -1.86 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 25 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 26 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 27 C -0.13 -2.11 8.70 22.27 0.19 -1.92 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.90 7.52 -2.38 -0.02 0.88 16 33 H 0.06 0.98 7.24 -2.38 -0.02 0.96 16 34 H 0.07 1.12 6.53 -2.39 -0.02 1.10 16 35 H 0.03 0.67 6.89 -2.39 -0.02 0.65 16 36 H 0.06 1.38 7.98 -2.38 -0.02 1.36 16 37 H 0.34 7.69 6.73 -89.70 -0.60 7.08 16 38 H 0.07 2.08 7.75 -2.39 -0.02 2.07 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.94 7.48 -2.39 -0.02 1.93 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 2.08 7.93 -2.39 -0.02 2.07 16 43 H 0.26 15.81 8.31 -92.72 -0.77 15.04 16 44 H 0.03 1.23 7.23 -2.39 -0.02 1.21 16 45 H 0.05 2.33 4.63 -2.38 -0.01 2.32 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.13 1.80 7.95 -2.91 -0.02 1.77 16 49 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 50 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 51 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 52 H 0.12 1.89 7.13 -2.91 -0.02 1.87 16 Total: -1.00 -65.82 393.15 2.25 -63.57 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.19 Total: 19.98 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 5.06 Total: -21.62 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -4.68 Total: -110.91 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.67 Total: 48.98 kcal Total: -65.82 2.25 -63.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611439212.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.767 kcal (2) G-P(sol) polarization free energy of solvation -65.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds