Wall clock time and date at job start Tue Mar 31 2020 11:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 C 1.50703 * 109.46613 * 120.00263 * 2 1 3 5 5 C 1.38236 * 120.00029 * 119.99875 * 4 2 1 6 6 C 1.38236 * 119.99813 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.00332 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00159 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47051 * 346.21853 * 8 7 6 10 10 C 1.52997 * 109.46919 * 106.22275 * 8 7 6 11 11 N 1.46900 * 109.46986 * 226.21899 * 8 7 6 12 12 C 1.46963 * 110.99853 * 181.36187 * 11 8 7 13 13 C 1.53051 * 109.36190 * 176.81315 * 12 11 8 14 14 N 1.46952 * 109.36538 * 58.40629 * 13 12 11 15 15 C 1.46900 * 110.99941 * 176.81160 * 14 13 12 16 16 C 1.50700 * 109.47122 * 58.18887 * 15 14 13 17 17 H 1.07994 * 120.00336 * 359.34204 * 16 15 14 18 18 C 1.37880 * 119.99327 * 179.34014 * 16 15 14 19 19 N 1.31520 * 119.99600 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00600 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47307 * 89.99775 * 20 18 16 22 22 H 1.48498 * 109.47232 * 210.00146 * 20 18 16 23 23 H 1.48505 * 109.46931 * 329.99944 * 20 18 16 24 24 C 1.46963 * 110.87714 * 300.67474 * 14 13 12 25 25 C 1.46953 * 111.00204 * 57.56497 * 11 8 7 26 26 C 1.38237 * 119.99957 * 0.25103 * 7 6 5 27 27 C 1.38239 * 119.99996 * 359.49125 * 26 7 6 28 28 H 1.08999 * 109.47047 * 300.00330 * 1 2 3 29 29 H 1.09002 * 109.47359 * 59.99754 * 1 2 3 30 30 H 1.08999 * 109.47798 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47047 * 239.99670 * 2 1 3 32 32 H 1.09001 * 109.46672 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46925 * 299.99909 * 3 2 1 34 34 H 1.09004 * 109.46924 * 60.00106 * 3 2 1 35 35 H 1.08002 * 120.00154 * 359.97438 * 5 4 2 36 36 H 1.07998 * 119.99442 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.47226 * 180.02562 * 10 8 7 38 38 H 1.09010 * 109.47205 * 299.99772 * 10 8 7 39 39 H 1.08999 * 109.47604 * 59.99916 * 10 8 7 40 40 H 1.08997 * 109.48876 * 296.78175 * 12 11 8 41 41 H 1.09001 * 109.48896 * 56.84390 * 12 11 8 42 42 H 1.08994 * 109.48939 * 298.43334 * 13 12 11 43 43 H 1.09003 * 109.50298 * 178.38242 * 13 12 11 44 44 H 1.08996 * 109.47221 * 178.19182 * 15 14 13 45 45 H 1.08998 * 109.46737 * 298.19097 * 15 14 13 46 46 H 0.96998 * 120.00117 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.48876 * 299.35460 * 24 14 13 48 48 H 1.09001 * 109.48896 * 179.29244 * 24 14 13 49 49 H 1.09002 * 109.49121 * 303.15814 * 25 11 8 50 50 H 1.09002 * 109.48745 * 63.19386 * 25 11 8 51 51 H 1.08003 * 120.00338 * 179.72418 * 26 7 6 52 52 H 1.07995 * 120.00344 * 180.23303 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 2.8269 -1.8345 1.1037 6 6 3.2871 -2.4865 2.2324 7 6 2.9522 -2.0149 3.4879 8 6 3.4535 -2.7260 4.7183 9 1 3.8453 -3.7039 4.4385 10 6 4.5640 -1.8986 5.3687 11 7 2.3477 -2.8957 5.6704 12 6 2.8075 -3.5583 6.8990 13 6 1.6475 -3.6444 7.8937 14 7 0.5360 -4.3866 7.2829 15 6 -0.5698 -4.5562 8.2350 16 6 -1.0429 -3.2036 8.7016 17 1 -0.5626 -2.3080 8.3364 18 6 -2.0891 -3.1097 9.5948 19 7 -2.5024 -1.9293 10.0016 20 14 -2.9196 -4.6589 10.2270 21 1 -2.2338 -5.1199 11.4608 22 1 -4.3437 -4.3682 10.5313 23 1 -2.8414 -5.7203 9.1912 24 6 0.0761 -3.7240 6.0544 25 6 1.2361 -3.6378 5.0597 26 6 2.1528 -0.8943 3.6147 27 6 1.6970 -0.2391 2.4860 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4423 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.0875 -2.2037 0.1228 36 1 3.9076 -3.3648 2.1333 37 1 4.9269 -2.4132 6.2585 38 1 5.3846 -1.7727 4.6622 39 1 4.1722 -0.9207 5.6485 40 1 3.1579 -4.5626 6.6611 41 1 3.6222 -2.9834 7.3392 42 1 1.3150 -2.6392 8.1524 43 1 1.9783 -4.1611 8.7946 44 1 -1.3918 -5.0804 7.7476 45 1 -0.2260 -5.1362 9.0914 46 1 -3.2382 -1.8632 10.6302 47 1 -0.2743 -2.7196 6.2923 48 1 -0.7386 -4.2989 5.6142 49 1 0.9051 -3.1209 4.1589 50 1 1.5688 -4.6430 4.8006 51 1 1.8875 -0.5283 4.5956 52 1 1.0756 0.6386 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612110307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:57 Heat of formation + Delta-G solvation = 6.947958 kcal Electronic energy + Delta-G solvation = -27174.183172 eV Core-core repulsion = 23751.116494 eV Total energy + Delta-G solvation = -3423.066677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08144 -39.89869 -37.64437 -35.89829 -34.54691 -32.66866 -31.97586 -31.70758 -29.85425 -29.23691 -27.97047 -26.59783 -24.96425 -23.86060 -23.74912 -23.23033 -21.64319 -20.71399 -20.55061 -18.87298 -17.56972 -17.41408 -16.48783 -16.13759 -16.05222 -15.86302 -15.66164 -15.51504 -15.23877 -14.89231 -14.63173 -14.42165 -14.35677 -14.19027 -14.15168 -13.79423 -13.66187 -13.39743 -13.14511 -12.89034 -12.82879 -12.73273 -12.62400 -12.30663 -12.22695 -12.10884 -12.06394 -11.96679 -11.95134 -11.76045 -11.64631 -11.46827 -11.32803 -11.28819 -10.79389 -9.73678 -9.35414 -9.26231 -8.99634 -8.31361 -6.36674 0.46668 0.58446 1.34787 1.36238 1.48233 2.33368 2.79392 3.02770 3.03268 3.30633 3.69778 3.85004 3.93286 4.02660 4.16335 4.20800 4.23893 4.28363 4.34854 4.40015 4.46008 4.52241 4.54520 4.57405 4.66194 4.67794 4.72515 4.81108 4.83083 4.83525 4.96619 4.99056 5.00550 5.02276 5.03186 5.10954 5.11261 5.15339 5.21493 5.25068 5.26246 5.34646 5.37905 5.39213 5.50639 5.60256 5.75028 5.81303 6.05567 6.11991 6.18231 6.26108 6.36452 6.39833 6.70483 7.29891 8.85016 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.003159 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.073725 B = 8862.428135 C = 9892.552360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.082 4.082 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.086 4.086 8 C 0.124 3.876 9 H 0.055 0.945 10 C -0.137 4.137 11 N -0.542 5.542 12 C 0.068 3.932 13 C 0.064 3.936 14 N -0.530 5.530 15 C 0.160 3.840 16 C -0.548 4.548 17 H 0.033 0.967 18 C 0.010 3.990 19 N -0.948 5.948 20 Si 0.950 3.050 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.246 1.246 24 C 0.067 3.933 25 C 0.079 3.921 26 C -0.102 4.102 27 C -0.128 4.128 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.015 0.985 43 H 0.071 0.929 44 H 0.029 0.971 45 H 0.031 0.969 46 H 0.266 0.734 47 H 0.012 0.988 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.041 0.959 51 H 0.106 0.894 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.106 -0.086 -20.739 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.082 4.082 5 C -0.141 4.141 6 C -0.135 4.135 7 C -0.087 4.087 8 C 0.016 3.984 9 H 0.072 0.928 10 C -0.194 4.194 11 N -0.268 5.268 12 C -0.059 4.059 13 C -0.064 4.064 14 N -0.254 5.254 15 C 0.033 3.967 16 C -0.587 4.587 17 H 0.051 0.949 18 C -0.188 4.188 19 N -0.588 5.588 20 Si 0.774 3.226 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.170 1.170 24 C -0.062 4.062 25 C -0.050 4.050 26 C -0.120 4.120 27 C -0.146 4.146 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.033 0.967 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.030 0.970 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.059 0.941 51 H 0.124 0.876 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.998 -0.013 -20.631 24.932 hybrid contribution -1.031 0.031 1.050 1.472 sum 12.967 0.018 -19.581 23.485 Atomic orbital electron populations 1.21860 0.94382 1.01766 1.02184 1.20157 0.95875 0.96306 0.94885 1.21839 1.01059 0.94808 1.02215 1.20083 0.97444 0.95941 0.94743 1.21243 0.98226 0.95498 0.99143 1.21196 1.00462 1.00329 0.91488 1.19758 0.98596 0.96093 0.94219 1.20563 0.90704 0.97512 0.89619 0.92758 1.21850 0.96800 0.99841 1.00931 1.62121 1.08528 1.50447 1.05690 1.22165 0.96371 0.97372 0.90014 1.21974 0.91439 0.96215 0.96807 1.62665 1.09005 1.47790 1.05911 1.20033 0.90269 0.94451 0.91983 1.21887 1.16890 0.93624 1.26252 0.94866 1.25941 0.97301 0.99459 0.96087 1.70092 1.28766 1.25880 1.34101 0.85662 0.77492 0.79807 0.79665 1.19046 1.21044 1.17000 1.21924 0.96755 0.96559 0.90929 1.21949 0.90948 0.96060 0.95997 1.20977 0.97169 0.95547 0.98336 1.21079 1.00769 1.00410 0.92299 0.93339 0.91022 0.93142 0.89294 0.92657 0.91132 0.93187 0.84124 0.84656 0.91410 0.90706 0.92991 0.93639 0.88781 0.96696 0.91017 0.95312 0.95135 0.92555 0.96985 0.91411 0.90593 0.94109 0.87576 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.01 71.98 0.65 -1.65 16 2 C -0.05 -0.83 3.09 -11.54 -0.04 -0.87 16 3 C -0.14 -2.00 9.01 71.98 0.65 -1.35 16 4 C -0.08 -1.64 4.78 -19.86 -0.09 -1.73 16 5 C -0.12 -2.29 9.67 22.27 0.22 -2.08 16 6 C -0.12 -2.34 9.67 22.27 0.22 -2.13 16 7 C -0.09 -2.07 3.55 -19.87 -0.07 -2.14 16 8 C 0.12 2.96 2.27 44.17 0.10 3.06 16 9 H 0.05 1.21 7.94 -2.39 -0.02 1.19 16 10 C -0.14 -2.88 8.85 71.98 0.64 -2.24 16 11 N -0.54 -16.52 4.08 -874.88 -3.57 -20.09 16 12 C 0.07 2.09 5.29 86.31 0.46 2.55 16 13 C 0.06 2.57 5.22 86.31 0.45 3.02 16 14 N -0.53 -22.61 4.92 -900.31 -4.43 -27.03 16 15 C 0.16 7.81 4.22 85.56 0.36 8.17 16 16 C -0.55 -31.82 8.23 25.60 0.21 -31.60 16 17 H 0.03 2.18 6.05 -2.91 -0.02 2.16 16 18 C 0.01 0.58 5.47 84.65 0.46 1.05 16 19 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 20 Si 0.95 44.50 27.48 68.60 1.89 46.39 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 24 C 0.07 2.73 5.33 86.31 0.46 3.19 16 25 C 0.08 2.55 5.28 86.31 0.46 3.00 16 26 C -0.10 -2.73 8.51 22.27 0.19 -2.54 16 27 C -0.13 -3.04 8.71 22.27 0.19 -2.84 16 28 H 0.05 0.86 7.39 -2.39 -0.02 0.84 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.13 7.88 -2.39 -0.02 1.11 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.78 7.39 -2.39 -0.02 0.77 16 35 H 0.14 1.90 7.95 -2.91 -0.02 1.88 16 36 H 0.14 2.16 7.99 -2.91 -0.02 2.14 16 37 H 0.07 1.32 6.31 -2.38 -0.02 1.31 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.05 1.24 8.08 -2.39 -0.02 1.22 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 2.51 6.11 -2.39 -0.01 2.50 16 42 H 0.01 0.71 6.46 -2.39 -0.02 0.69 16 43 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.03 1.40 7.12 -2.39 -0.02 1.38 16 45 H 0.03 1.45 7.60 -2.39 -0.02 1.44 16 46 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 47 H 0.01 0.58 6.94 -2.39 -0.02 0.56 16 48 H 0.07 2.67 8.11 -2.39 -0.02 2.65 16 49 H 0.08 2.41 6.43 -2.39 -0.02 2.39 16 50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.11 3.30 7.90 -2.91 -0.02 3.28 16 52 H 0.12 2.70 7.10 -2.91 -0.02 2.68 16 Total: -1.00 -66.98 391.53 0.49 -66.48 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.81 Total: 21.17 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 5.50 Total: -27.13 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -7.70 Total: -106.91 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.89 Total: 46.39 kcal Total: -66.98 0.49 -66.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612110307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.432 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds